# Searching for sequence motifs characteristic for porins. # This script covers the following patterns: # # aromatic-anything-aliphatic # charged-anything-TYR-anything-hydrophobic # # 2004/04/26 # Hide water and other hetero atoms: select hetero hide # Draw just a backbone, using blue color: select complement show backbone 4 color cyan-blue # Select the first pattern: pattern = ARG LYS ASP GLU ASN GLN SER THR / * / ARG LYS ASP GLU ASN GLN SER THR / * / PHE TYR TRP / * / LEU ILE VAL ALA GLY MET / * / LEU ILE VAL ALA GLY MET select pattern color red # Select the second pattern (the first pattern is reversed here): pattern = LEU ILE VAL ALA GLY MET / * / LEU ILE VAL ALA GLY MET / * / PHE TYR TRP / * / ARG LYS ASP GLU ASN GLN SER THR / * / ARG LYS ASP GLU ASN GLN SER THR select pattern color yellow