<html> <head> <title> Script 1 </title> </head> <h1 align=center> Garlic Tutorial </h1> <h2 align=center> Script 1 (atoms.script) - Drawing styles for atoms </h2> <hr size="3"> This script shows the available drawing styles for atoms. Note that nothing is visible for style "0" (row one, column one)! The file trp.pdb is required as input. You can mark, copy and paste this script to your local host (create the file atoms.script). <br><br> Type the following command at garlic prompt: <br><br> <font color=RED> exe atoms.script </font> <br><br> The sample image is at the bottom of this page. <br><br> <hr size="3"> <pre> # Show all drawing styles used to draw atoms. Bonds are hidden! # This script requires garlic version 1.2 or later! # Atom style 0: load trp.pdb pos -24 -15 0 ato 0 bon 0 tag "0" # Now inform user that refreshing is off: title 1 50 50 "Please be patient ..." # Switch refreshing off: refresh off # Atom style 1: load trp.pdb pos -12 -15 0 ato 1 bon 0 tag "1" # Atom style 2: load trp.pdb pos 0 -15 0 ato 2 bon 0 tag "2" # Atom style 3: load trp.pdb pos 12 -15 0 ato 3 bon 0 tag "3" # Atom style 4: load trp.pdb pos 24 -15 0 ato 4 bon 0 tag "4" # Atom style 5: load trp.pdb pos -24 -5 0 ato 5 bon 0 tag "5" # Atom style 6: load trp.pdb pos -12 -5 0 ato 6 bon 0 tag "6" # Atom style 7: load trp.pdb pos 0 -5 0 ato 7 bon 0 tag "7" # Atom style bal: load trp.pdb pos 12 -5 0 ato bal bon 0 tag "bal (ball)" # Atom style ba2: load trp.pdb pos 24 -5 0 ato ba2 bon 0 tag "ba2" #Atom style small: load trp.pdb pos -24 5 0 ato sma bon 0 tag "sma (small)" # Atom style sm2: load trp.pdb pos -12 5 0 ato sm2 bon 0 tag "sm2" # Atom style covalent: load trp.pdb pos 0 5 0 ato cov bon 0 tag "cov (covalent)" #Atom style co2: load trp.pdb pos 12 5 0 ato co2 bon 0 tag "co2" #Atom style spacefill: load trp.pdb pos -24 15 0 ato spa bon 0 tag "spa (spacefill)" #Atom style sp2: load trp.pdb pos -12 15 0 ato sp2 bon 0 tag "sp2" #Atom style big: load trp.pdb pos 0 15 0 ato big bon 0 tag "big" #Atom style bi2: load trp.pdb pos 12 15 0 ato bi2 bon 0 tag "bi2" # Hide the title: title 1 off # Switch refreshing on: refresh </pre> <img src="../commands/atoms.gif"> <hr size="3"> </html>