<html> <head> <title> WIN, WINDOW </title> </head> <h1 align=center> WIN, WINDOW </h1> <hr size="3"> <font color=#880000> <b> NAME <br> </b> </font> WIN, WINDOW - set the sliding window width. <br><br> <font color=#880000> <b> SYNOPSIS <br> </b> </font> WIN value <br> WINDOW value <br><br> <font color=#880000> <b> DESCRIPTION <br> </b> </font> Set the sliding window width. The value is stored as an internal variable and used to calculate and draw average hydrophobicity and hydrophobic moment. The hard-coded default value is 11 residues. The minimal value is 1. The command PLOT may be used to plot the averaged hydrophobicity and/or hydrophobic moment. <br><br> <font color=#880000> <b> EXAMPLES <br> </b> </font> <table border=2 cellspacing=2 cellpading=0> <td align="left"> COMMAND </td> <td align="left"> DESCRIPTION </td> <tr> <td align="left"> win 20 </td> <td align="left"> Set the sliding window width to 20. </td> <tr> <td align="left"> win 8 <br> plot mom </td> <td align="left"> Set the sliding window width to 8 <br> and draw hydrophobic moment. </td> </table> <br> <font color=#880000> <b> RELATED COMMANDS <br> </b> </font> PLOT is used to draw averaged hydrophobicity and/or the hydrophobic moment. ANGLE is used to set the rotation angle between adjacent residues (important for hydrophobic moment, not for averaged hydrophobicity). DUMP is used to dump hydrophobicity functions to the console or to the specified file. <br><br> <hr size="3"> </html>
