Sophie

Sophie

distrib > Mandriva > cooker > i586 > by-pkgid > eede1088262777189a3d3f16cb3dc560 > files > 161

garlic-1.6-6.i586.rpm

<html>

<head>
<title>
STI, STICKS
</title>
</head>

<h1 align=center>

STI, STICKS

</h1>

<hr size="3">

<font color=#880000>
<b>
NAME
<br>
</b>
</font>


STI, STICKS - set the radius of sticks.
<br><br>


<font color=#880000>
<b>
SYNOPSIS
<br>
</b>
</font>


STI value
<br>
STICKS value
<br><br>


<font color=#880000>
<b>
DESCRIPTION
<br>
</b>
</font>


Set the stick radius. The stick radius is used to draw selected bonds
as sticks. To draw bonds as sticks, execute the command BONDS STICKS
(short form: BON STI). Default radius is 0.15 angstroms, but this may
be changed in the configuration file
<a href="../config/index.html">
.garlicrc
</a>
.
<br><br>

One and only one stick radius is assigned to each loaded structure.
Thus, after the command BONDS STICKS, all selected bonds will be drawn as 
sticks of the same radius. The stick radius may be changed separately for
each structure. The command STICKS affects only the structure which is
currently "caught" (see the command
<a href="cat.html">
CATCH
</a>
)
.
<br><br>


<font color=#880000>
<b>
EXAMPLES
<br>
</b>
</font>


The image below shows the adrenalin molecule drawn using default stick radius
and default ball radius. Bonds were drawn as sticks (BON STI) while atoms were
drawn as specular balls (ATO BA2).
<br><br>


<img src="balls_and_sticks.gif">

<br><br>

<font color=#880000>
<b>
RELATED COMMANDS
<br>
</b>
</font>


BONDS is used to define drawing style for bonds. SSB is used to define
drawing style for disulfide bonds. ATOMS is used to define drawing style
for atoms. PROBE is used to define the bond probe radius (the alternative
way to draw bonds as sticks).
<br><br>


<hr size="3">

</html>