%define name tree-puzzle %define version 5.2 %define rel 5 %define release %mkrel %{rel} Name: %{name} Version: %{version} Release: %{release} Summary: Maximum likelihood analysis for nucleotide, amino acid and two-state data Group: Sciences/Biology License: GPL URL: http://www.tree-puzzle.de Source: http://www.tree-puzzle.de/%{name}-%{version}.tar.bz2 BuildRoot: %{_tmppath}/%{name}-%{version} %description TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. %prep %setup -q %build %configure %make %install rm -rf %{buildroot} %makeinstall_std %clean rm -rf %{buildroot} %files %defattr(-,root,root) %{_bindir}/* %doc AUTHORS COPYING ChangeLog README %doc doc/tree-puzzle.pdf %doc data/EF.3trees data/globin.a data/globin.trees data/marswolf.n %doc data/primates.b data/primates.trees data/EF.phy data/atp6.a %doc data/globin.ctrees data/marswolf.ctrees data/marswolf.trees %doc data/primates.ctrees %changelog * Mon Mar 15 2010 Eric Fernandez <zeb@mandriva.org> 5.2-5mdv2010.1 + Revision: 519809 - bump release version and rebuild * Wed May 06 2009 Eric Fernandez <zeb@mandriva.org> 5.2-4mdv2010.0 + Revision: 372573 - rebuild * Wed Jan 02 2008 Olivier Blin <oblin@mandriva.com> 5.2-3mdv2009.0 + Revision: 140921 - restore BuildRoot + Thierry Vignaud <tv@mandriva.org> - kill re-definition of %%buildroot on Pixel's request * Tue Dec 19 2006 Eric Fernandez <zeb@mandriva.org> 5.2-3mdv2007.0 + Revision: 100252 - Import tree-puzzle * Mon Jun 26 2006 Eric Fernandez <zeb@zebulon.org.uk> 5.2-3mdv2007.0 - rebuild - use mkrel * Wed Nov 02 2005 Guillaume Rousse <guillomovitch@mandriva.org> 5.2-2mdk - %%mkrel - spec cleanup * Sat Oct 02 2004 Guillaume Rousse <guillomovitch@mandrake.org> 5.2-1mdk - first mdk release with a spec stolen from Luc Ducazu <luc@biolinux.org>