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distrib > Mandriva > 2009.1 > x86_64 > media > contrib-release > by-pkgid > f135cfe04b2d2d3111609072c0a6630e > files

perl-bioperl-1.6.0-1mdv2009.1.noarch.rpm

Files

-rwxr-xr-x 2870 root root /usr/bin/bp_aacomp.pl
-rwxr-xr-x 15408 root root /usr/bin/bp_biblio.pl
-rwxr-xr-x 8390 root root /usr/bin/bp_biofetch_genbank_proxy.pl
-rwxr-xr-x 3742 root root /usr/bin/bp_bioflat_index.pl
-rwxr-xr-x 1648 root root /usr/bin/bp_biogetseq.pl
-rwxr-xr-x 20313 root root /usr/bin/bp_bulk_load_gff.pl
-rwxr-xr-x 4356 root root /usr/bin/bp_chaos_plot.pl
-rwxr-xr-x 6484 root root /usr/bin/bp_classify_hits_kingdom.pl
-rwxr-xr-x 2726 root root /usr/bin/bp_composite_LD.pl
-rwxr-xr-x 2765 root root /usr/bin/bp_dbsplit.pl
-rwxr-xr-x 3102 root root /usr/bin/bp_download_query_genbank.pl
-rwxr-xr-x 2201 root root /usr/bin/bp_extract_feature_seq.pl
-rwxr-xr-x 15312 root root /usr/bin/bp_fast_load_gff.pl
-rwxr-xr-x 3954 root root /usr/bin/bp_fastam9_to_table.pl
-rwxr-xr-x 8337 root root /usr/bin/bp_fetch.pl
-rwxr-xr-x 1841 root root /usr/bin/bp_filter_search.pl
-rwxr-xr-x 9458 root root /usr/bin/bp_flanks.pl
-rwxr-xr-x 3156 root root /usr/bin/bp_gccalc.pl
-rwxr-xr-x 10443 root root /usr/bin/bp_genbank2gff.pl
-rwxr-xr-x 37211 root root /usr/bin/bp_genbank2gff3.pl
-rwxr-xr-x 3805 root root /usr/bin/bp_generate_histogram.pl
-rwxr-xr-x 4823 root root /usr/bin/bp_heterogeneity_test.pl
-rwxr-xr-x 2740 root root /usr/bin/bp_hmmer_to_table.pl
-rwxr-xr-x 5172 root root /usr/bin/bp_index.pl
-rwxr-xr-x 5737 root root /usr/bin/bp_load_gff.pl
-rwxr-xr-x 1862 root root /usr/bin/bp_local_taxonomydb_query.pl
-rwxr-xr-x 3294 root root /usr/bin/bp_make_mrna_protein.pl
-rwxr-xr-x 4947 root root /usr/bin/bp_mask_by_search.pl
-rwxr-xr-x 2314 root root /usr/bin/bp_meta_gff.pl
-rwxr-xr-x 3093 root root /usr/bin/bp_mrtrans.pl
-rwxr-xr-x 4101 root root /usr/bin/bp_mutate.pl
-rwxr-xr-x 906 root root /usr/bin/bp_nexus2nh.pl
-rwxr-xr-x 3581 root root /usr/bin/bp_nrdb.pl
-rwxr-xr-x 6309 root root /usr/bin/bp_oligo_count.pl
-rwxr-xr-x 6646 root root /usr/bin/bp_parse_hmmsearch.pl
-rwxr-xr-x 7169 root root /usr/bin/bp_process_gadfly.pl
-rwxr-xr-x 3795 root root /usr/bin/bp_process_sgd.pl
-rwxr-xr-x 7744 root root /usr/bin/bp_process_wormbase.pl
-rwxr-xr-x 2777 root root /usr/bin/bp_query_entrez_taxa.pl
-rwxr-xr-x 4940 root root /usr/bin/bp_remote_blast.pl
-rwxr-xr-x 2030 root root /usr/bin/bp_search2BSML.pl
-rwxr-xr-x 4241 root root /usr/bin/bp_search2alnblocks.pl
-rwxr-xr-x 11723 root root /usr/bin/bp_search2gff.pl
-rwxr-xr-x 2416 root root /usr/bin/bp_search2table.pl
-rwxr-xr-x 2777 root root /usr/bin/bp_search2tribe.pl
-rwxr-xr-x 1744 root root /usr/bin/bp_seq_length.pl
-rwxr-xr-x 2314 root root /usr/bin/bp_seqconvert.pl
-rwxr-xr-x 4084 root root /usr/bin/bp_seqfeature_delete.pl
-rwxr-xr-x 1813 root root /usr/bin/bp_seqfeature_gff3.pl
-rwxr-xr-x 3543 root root /usr/bin/bp_seqfeature_load.pl
-rwxr-xr-x 2389 root root /usr/bin/bp_seqret.pl
-rwxr-xr-x 1575 root root /usr/bin/bp_seqretsplit.pl
-rwxr-xr-x 4305 root root /usr/bin/bp_split_seq.pl
-rwxr-xr-x 5899 root root /usr/bin/bp_sreformat.pl
-rwxr-xr-x 1674 root root /usr/bin/bp_taxid4species.pl
-rwxr-xr-x 2632 root root /usr/bin/bp_taxonomy2tree.pl
-rwxr-xr-x 1477 root root /usr/bin/bp_translate_seq.pl
-rwxr-xr-x 1467 root root /usr/bin/bp_tree2pag.pl
-rwxr-xr-x 7525 root root /usr/bin/bp_unflatten_seq.pl
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO
-rw-r--r-- 14228 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO.pm
-rw-r--r-- 22291 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AnalysisI.pm
-rw-r--r-- 4670 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AnalysisParserI.pm
-rw-r--r-- 6106 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AnalysisResultI.pm
-rw-r--r-- 2619 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AnnotatableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation
-rw-r--r-- 6136 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AnnotationCollectionI.pm
-rw-r--r-- 5152 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AnnotationI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Assembly
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio
-rw-r--r-- 10495 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Biblio.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Cluster
-rw-r--r-- 3775 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterIO
-rw-r--r-- 7366 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/ClusterIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/CodonUsage
-rw-r--r-- 6306 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/ConfigData.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Coordinate
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/DB
-rw-r--r-- 2437 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/DBLinkContainerI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Das
-rw-r--r-- 13381 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/DasI.pm
-rw-r--r-- 2683 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/DescribableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Event
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Expression
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Factory
-rw-r--r-- 6735 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureHolderI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO
-rw-r--r-- 13355 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/FeatureIO.pm
-rw-r--r-- 7105 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/HandlerBaseI.pm
-rw-r--r-- 2337 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/IdCollectionI.pm
-rw-r--r-- 4840 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/IdentifiableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Index
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/LiveSeq
-rw-r--r-- 18374 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/LocatableSeq.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Location
-rw-r--r-- 11897 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/LocationI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Map
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/MapIO
-rw-r--r-- 4861 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/MapIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Matrix
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/MolEvol
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Ontology
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO
-rw-r--r-- 9126 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/OntologyIO.pm
-rw-r--r-- 6710 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/ParameterBaseI.pm
-rw-r--r-- 16843 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Perl.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Phenotype
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/PhyloNetwork
-rw-r--r-- 44728 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/PhyloNetwork.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/PopGen
-rw-r--r-- 25805 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/PrimarySeq.pm
-rw-r--r-- 23739 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/PrimarySeqI.pm
-rw-r--r-- 19511 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/PullParserI.pm
-rw-r--r-- 8303 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Range.pm
-rw-r--r-- 18430 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/RangeI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Restriction
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Root
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Search
-rw-r--r-- 5105 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchDist.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO
-rw-r--r-- 15630 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SearchIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq
-rw-r--r-- 36917 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Seq.pm
-rw-r--r-- 3125 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqAnalysisParserI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqEvolution
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeature
-rw-r--r-- 19675 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqFeatureI.pm
-rw-r--r-- 6111 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO
-rw-r--r-- 21711 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqIO.pm
-rw-r--r-- 24449 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SeqUtils.pm
-rw-r--r-- 86306 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SimpleAlign.pm
-rw-r--r-- 7323 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/SimpleAnalysisI.pm
-rw-r--r-- 15723 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Species.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Structure
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Symbol
-rw-r--r-- 22905 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxon.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy
-rw-r--r-- 11437 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Taxonomy.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Tools
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Tree
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO
-rw-r--r-- 7966 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/TreeIO.pm
-rw-r--r-- 3083 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/UpdateableSeqI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Variation
-rw-r--r-- 4756 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/WebAgent.pm
-rw-r--r-- 18927 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/AlignI.pm
-rw-r--r-- 50112 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/DNAStatistics.pm
-rw-r--r-- 6968 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/PairwiseStatistics.pm
-rw-r--r-- 8130 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/ProteinStatistics.pm
-rw-r--r-- 2219 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/StatisticsI.pm
-rw-r--r-- 12569 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Align/Utilities.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/Handler
-rw-r--r-- 8651 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/arp.pm
-rw-r--r-- 5386 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/bl2seq.pm
-rw-r--r-- 10031 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/clustalw.pm
-rw-r--r-- 6265 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/emboss.pm
-rw-r--r-- 5745 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/fasta.pm
-rw-r--r-- 4725 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/largemultifasta.pm
-rw-r--r-- 3696 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/maf.pm
-rw-r--r-- 2870 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/mase.pm
-rw-r--r-- 5998 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/mega.pm
-rw-r--r-- 5697 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/meme.pm
-rw-r--r-- 5270 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/metafasta.pm
-rw-r--r-- 5865 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/msf.pm
-rw-r--r-- 13832 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/nexus.pm
-rw-r--r-- 3257 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/pfam.pm
-rw-r--r-- 14984 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/phylip.pm
-rw-r--r-- 8507 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/po.pm
-rw-r--r-- 8040 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/proda.pm
-rw-r--r-- 2804 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/prodom.pm
-rw-r--r-- 3536 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/psi.pm
-rw-r--r-- 4208 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/selex.pm
-rw-r--r-- 24093 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/stockholm.pm
-rw-r--r-- 6128 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/xmfa.pm
-rw-r--r-- 23766 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/AlignIO/Handler/GenericAlignHandler.pm
-rw-r--r-- 6948 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/AnnotationFactory.pm
-rw-r--r-- 18428 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Collection.pm
-rw-r--r-- 4596 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Comment.pm
-rw-r--r-- 10057 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/DBLink.pm
-rw-r--r-- 14237 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/OntologyTerm.pm
-rw-r--r-- 12751 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Reference.pm
-rw-r--r-- 6485 root root /usr/lib/perl5/vendor_perl/5.10.0/Bio/Annotation/Relation.pm
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