<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.NeuralNetwork-module.html">Package NeuralNetwork</a> :: <a href="Bio.NeuralNetwork.BackPropagation-module.html">Package BackPropagation</a> :: <a href="Bio.NeuralNetwork.BackPropagation.Network-module.html">Module Network</a> :: Class BasicNetwork </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class BasicNetwork</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.NeuralNetwork.BackPropagation.Network-pysrc.html#BasicNetwork">source code</a></span></p> <p>Represent a Basic Neural Network with three layers.</p> <p>This deals with a Neural Network containing three layers:</p> <p>o Input Layer</p> <p>o Hidden Layer</p> <p>o Output Layer</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">input_layer</span>, <span class="summary-sig-arg">hidden_layer</span>, <span class="summary-sig-arg">output_layer</span>)</span><br /> Initialize the network with the three layers.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.NeuralNetwork.BackPropagation.Network-pysrc.html#BasicNetwork.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#train" class="summary-sig-name">train</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">training_examples</span>, <span class="summary-sig-arg">validation_examples</span>, <span class="summary-sig-arg">stopping_criteria</span>, <span class="summary-sig-arg">learning_rate</span>, <span class="summary-sig-arg">momentum</span>)</span><br /> Train the neural network to recognize particular examples.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.NeuralNetwork.BackPropagation.Network-pysrc.html#BasicNetwork.train">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#predict" class="summary-sig-name">predict</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">inputs</span>)</span><br /> Predict outputs from the neural network with the given inputs.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.NeuralNetwork.BackPropagation.Network-pysrc.html#BasicNetwork.predict">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="train"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">train</span>(<span class="sig-arg">self</span>, <span class="sig-arg">training_examples</span>, <span class="sig-arg">validation_examples</span>, <span class="sig-arg">stopping_criteria</span>, <span class="sig-arg">learning_rate</span>, <span class="sig-arg">momentum</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.NeuralNetwork.BackPropagation.Network-pysrc.html#BasicNetwork.train">source code</a></span> </td> </tr></table> <p>Train the neural network to recognize particular examples.</p> <p>Arguments:</p> <p>o training_examples -- A list of TrainingExample classes that will be used to train the network.</p> <p>o validation_examples -- A list of TrainingExample classes that are used to validate the network as it is trained. These examples are not used to train so the provide an independent method of checking how the training is doing. Normally, when the error from these examples starts to rise, then it's time to stop training.</p> <p>o stopping_criteria -- A function, that when passed the number of iterations, the training error, and the validation error, will determine when to stop learning.</p> <p>o learning_rate -- The learning rate of the neural network.</p> <p>o momentum -- The momentum of the NN, which describes how much of the prevoious weight change to use.</p> <dl class="fields"> </dl> </td></tr></table> </div> <a name="predict"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">predict</span>(<span class="sig-arg">self</span>, <span class="sig-arg">inputs</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.NeuralNetwork.BackPropagation.Network-pysrc.html#BasicNetwork.predict">source code</a></span> </td> </tr></table> <p>Predict outputs from the neural network with the given inputs.</p> <p>This uses the current neural network to predict outputs, no training of the neural network is done here.</p> <dl class="fields"> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:36 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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