<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Mindy.XPath</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Mindy-module.html">Package Mindy</a> :: Module XPath </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Mindy.XPath-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module XPath</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Mindy.XPath-pysrc.html">source code</a></span></p> <!-- ==================== CLASSES ==================== --> <a name="section-Classes"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Classes</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Classes" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.XPath.GrabXPathNodes-class.html" class="summary-name">GrabXPathNodes</a> </td> </tr> </table> <!-- ==================== FUNCTIONS ==================== --> <a name="section-Functions"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Functions</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Functions" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="parse_simple_xpath"></a><span class="summary-sig-name">parse_simple_xpath</span>(<span class="summary-sig-arg">s</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.XPath-pysrc.html#parse_simple_xpath">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="xpath_index"></a><span class="summary-sig-name">xpath_index</span>(<span class="summary-sig-arg">dbname</span>, <span class="summary-sig-arg">filenames</span>, <span class="summary-sig-arg">primary_namespace</span>, <span class="summary-sig-arg">extract_info</span>, <span class="summary-sig-arg">format</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">sequence</code><code class="variable-quote">'</code></span>, <span class="summary-sig-arg">record_tag</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">record</code><code class="variable-quote">'</code></span>, <span class="summary-sig-arg">creator_factory</span>=<span class="summary-sig-default">None</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.XPath-pysrc.html#xpath_index">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="_name"></a><span class="summary-name">_name</span> = <code title="'[a-zA-Z_:][-a-zA-Z0-9._:]*'"><code class="variable-quote">'</code><code class="variable-string">[a-zA-Z_:][-a-zA-Z0-9._:]*</code><code class="variable-quote">'</code></code> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.XPath-module.html#_pat_tag_re" class="summary-name" onclick="show_private();">_pat_tag_re</a> = <code title="re.compile(r'^//([a-zA-Z_:][-a-zA-Z0-9\._:]*)(\[@([a-zA-Z_:][-a-zA-Z0-\ 9\._:]*)=("[^"]*"|\'[^\']*\')\])?$')">re.compile(r'^//<code class="re-group">(</code><code class="re-group">[</code>a<code class="re-op">-</code>zA<code class="re-op">-</code>Z_:<code class="re-group">]</code><code class="re-group">[</code>-a<code class="re-op">-</code>zA<code class="re-op">-</code>Z0<code class="re-op">-</code>9\._:<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code><code class="re-group">(</code>\[<code class="variable-ellipsis">...</code></code> </td> </tr> </table> <!-- ==================== VARIABLES DETAILS ==================== --> <a name="section-VariablesDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-VariablesDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="_pat_tag_re"></a> <div class="private"> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">_pat_tag_re</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> re.compile(r'^//<code class="re-group">(</code><code class="re-group">[</code>a<code class="re-op">-</code>zA<code class="re-op">-</code>Z_:<code class="re-group">]</code><code class="re-group">[</code>-a<code class="re-op">-</code>zA<code class="re-op">-</code>Z0<code class="re-op">-</code>9\._:<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code><code class="re-group">(</code>\[@<code class="re-group">(</code><code class="re-group">[</code>a<code class="re-op">-</code>zA<code class="re-op">-</code>Z_:<code class="re-group">]</code><code class="re-group">[</code>-a<code class="re-op">-</code>zA<code class="re-op">-</code>Z0<code class="re-op">-</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> 9\._:<code class="re-group">]</code><code class="re-op">*</code><code class="re-group">)</code>=<code class="re-group">(</code>"<code class="re-group">[^</code>"<code class="re-group">]</code><code class="re-op">*</code>"<code class="re-op">|</code>\'<code class="re-group">[^</code>\'<code class="re-group">]</code><code class="re-op">*</code>\'<code class="re-group">)</code>\]<code class="re-group">)</code><code class="re-op">?</code>$') </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:24 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because 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