<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Mindy.FlatDB</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Mindy-module.html">Package Mindy</a> :: Module FlatDB </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Mindy.FlatDB-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module FlatDB</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html">source code</a></span></p> <!-- ==================== CLASSES ==================== --> <a name="section-Classes"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Classes</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Classes" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.BaseFlatDB-class.html" class="summary-name">BaseFlatDB</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.PrimaryTable-class.html" class="summary-name">PrimaryTable</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.SecondaryTable-class.html" class="summary-name">SecondaryTable</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.MemoryFlatDB-class.html" class="summary-name">MemoryFlatDB</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.BisectFile-class.html" class="summary-name">BisectFile</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.PrimaryNamespace-class.html" class="summary-name">PrimaryNamespace</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.SecondaryNamespace-class.html" class="summary-name">SecondaryNamespace</a> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Mindy.FlatDB.DiskFlatDB-class.html" class="summary-name">DiskFlatDB</a> </td> </tr> </table> <!-- ==================== FUNCTIONS ==================== --> <a name="section-Functions"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Functions</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Functions" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_parse_primary_table_entry"></a><span class="summary-sig-name">_parse_primary_table_entry</span>(<span class="summary-sig-arg">s</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_parse_primary_table_entry">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_read_primary_table"></a><span class="summary-sig-name">_read_primary_table</span>(<span class="summary-sig-arg">filename</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_read_primary_table">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_write_primary_table"></a><span class="summary-sig-name">_write_primary_table</span>(<span class="summary-sig-arg">filename</span>, <span class="summary-sig-arg">primary_table</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_write_primary_table">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_parse_secondary_table_entry"></a><span class="summary-sig-name">_parse_secondary_table_entry</span>(<span class="summary-sig-arg">s</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_parse_secondary_table_entry">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_read_secondary_table"></a><span class="summary-sig-name">_read_secondary_table</span>(<span class="summary-sig-arg">filename</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_read_secondary_table">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_write_secondary_table"></a><span class="summary-sig-name">_write_secondary_table</span>(<span class="summary-sig-arg">filename</span>, <span class="summary-sig-arg">table</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_write_secondary_table">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_find_entry"></a><span class="summary-sig-name">_find_entry</span>(<span class="summary-sig-arg">filename</span>, <span class="summary-sig-arg">wantword</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_find_entry">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_find_range"></a><span class="summary-sig-name">_find_range</span>(<span class="summary-sig-arg">filename</span>, <span class="summary-sig-arg">wantword</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_find_range">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_lookup_location"></a><span class="summary-sig-name">_lookup_location</span>(<span class="summary-sig-arg">key_filename</span>, <span class="summary-sig-arg">word</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_lookup_location">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_lookup_alias"></a><span class="summary-sig-name">_lookup_alias</span>(<span class="summary-sig-arg">id_filename</span>, <span class="summary-sig-arg">word</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_lookup_alias">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="create"></a><span class="summary-sig-name">create</span>(<span class="summary-sig-arg">dbname</span>, <span class="summary-sig-arg">primary_namespace</span>, <span class="summary-sig-arg">secondary_namespaces</span>, <span class="summary-sig-arg">formatname</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">unknown</code><code class="variable-quote">'</code></span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#create">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="open"></a><span class="summary-sig-name">open</span>(<span class="summary-sig-arg">dbname</span>, <span class="summary-sig-arg">mode</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">r</code><code class="variable-quote">'</code></span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#open">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_get_first_words"></a><span class="summary-sig-name">_get_first_words</span>(<span class="summary-sig-arg">filename</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Mindy.FlatDB-pysrc.html#_get_first_words">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="INDEX_TYPE"></a><span class="summary-name">INDEX_TYPE</span> = <code title="'flat/1'"><code class="variable-quote">'</code><code class="variable-string">flat/1</code><code class="variable-quote">'</code></code> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:24 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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