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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.Affy-module.html">Package Affy</a> ::
Module CelFile
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module CelFile</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Affy.CelFile-pysrc.html">source code</a></span></p>
<p>No version number yet.</p>
<p>Classes for accessing the information in Affymetrix cel files.</p>
<p>class CelParser: parses cel files class CelRecord: stores the
information from a cel file</p>
<!-- ==================== CLASSES ==================== -->
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<span class="summary-type"> </span>
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<a href="Bio.Affy.CelFile.CelScanner-class.html" class="summary-name">CelScanner</a><br />
Scannner for Affymetrix CEL files.
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<a href="Bio.Affy.CelFile.CelConsumer-class.html" class="summary-name">CelConsumer</a>
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<span class="summary-type"> </span>
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<a href="Bio.Affy.CelFile.CelRecord-class.html" class="summary-name">CelRecord</a><br />
Stores the information in a cel file
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<span class="summary-type"> </span>
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<a href="Bio.Affy.CelFile.CelParser-class.html" class="summary-name">CelParser</a><br />
Takes a handle to an Affymetrix cel file, parses the file and
returns an instance of a CelRecord
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<!-- ==================== VARIABLES ==================== -->
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<a name="Complex0"></a><span class="summary-name">Complex0</span> = <code title="'F'"><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code></code>
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<a name="Complex16"></a><span class="summary-name">Complex16</span> = <code title="'F'"><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code></code>
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<a name="Complex32"></a><span class="summary-name">Complex32</span> = <code title="'F'"><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code></code>
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<a name="Complex64"></a><span class="summary-name">Complex64</span> = <code title="'D'"><code class="variable-quote">'</code><code class="variable-string">D</code><code class="variable-quote">'</code></code>
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<a name="Complex8"></a><span class="summary-name">Complex8</span> = <code title="'F'"><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code></code>
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<a name="Float0"></a><span class="summary-name">Float0</span> = <code title="'f'"><code class="variable-quote">'</code><code class="variable-string">f</code><code class="variable-quote">'</code></code>
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<a name="Float16"></a><span class="summary-name">Float16</span> = <code title="'f'"><code class="variable-quote">'</code><code class="variable-string">f</code><code class="variable-quote">'</code></code>
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<a name="Float32"></a><span class="summary-name">Float32</span> = <code title="'f'"><code class="variable-quote">'</code><code class="variable-string">f</code><code class="variable-quote">'</code></code>
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<a name="Float64"></a><span class="summary-name">Float64</span> = <code title="'d'"><code class="variable-quote">'</code><code class="variable-string">d</code><code class="variable-quote">'</code></code>
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<a name="Float8"></a><span class="summary-name">Float8</span> = <code title="'f'"><code class="variable-quote">'</code><code class="variable-string">f</code><code class="variable-quote">'</code></code>
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<a name="Int0"></a><span class="summary-name">Int0</span> = <code title="'1'"><code class="variable-quote">'</code><code class="variable-string">1</code><code class="variable-quote">'</code></code>
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<a name="Int16"></a><span class="summary-name">Int16</span> = <code title="'s'"><code class="variable-quote">'</code><code class="variable-string">s</code><code class="variable-quote">'</code></code>
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<a name="Int32"></a><span class="summary-name">Int32</span> = <code title="'i'"><code class="variable-quote">'</code><code class="variable-string">i</code><code class="variable-quote">'</code></code>
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<a name="Int64"></a><span class="summary-name">Int64</span> = <code title="'l'"><code class="variable-quote">'</code><code class="variable-string">l</code><code class="variable-quote">'</code></code>
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<a name="Int8"></a><span class="summary-name">Int8</span> = <code title="'1'"><code class="variable-quote">'</code><code class="variable-string">1</code><code class="variable-quote">'</code></code>
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<a name="absolute"></a><span class="summary-name">absolute</span> = <code title="<ufunc 'absolute'>"><ufunc 'absolute'></code>
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<a name="add"></a><span class="summary-name">add</span> = <code title="<ufunc 'add'>"><ufunc 'add'></code>
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<a name="arccos"></a><span class="summary-name">arccos</span> = <code title="<ufunc 'arccos'>"><ufunc 'arccos'></code>
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<a name="arccosh"></a><span class="summary-name">arccosh</span> = <code title="<ufunc 'arccosh'>"><ufunc 'arccosh'></code>
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<a name="arcsin"></a><span class="summary-name">arcsin</span> = <code title="<ufunc 'arcsin'>"><ufunc 'arcsin'></code>
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<a name="arcsinh"></a><span class="summary-name">arcsinh</span> = <code title="<ufunc 'arcsinh'>"><ufunc 'arcsinh'></code>
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<a name="arctan"></a><span class="summary-name">arctan</span> = <code title="<ufunc 'arctan'>"><ufunc 'arctan'></code>
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<a name="arctan2"></a><span class="summary-name">arctan2</span> = <code title="<ufunc 'arctan2'>"><ufunc 'arctan2'></code>
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<a name="arctanh"></a><span class="summary-name">arctanh</span> = <code title="<ufunc 'arctanh'>"><ufunc 'arctanh'></code>
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<a name="bitwise_and"></a><span class="summary-name">bitwise_and</span> = <code title="<ufunc 'bitwise_and'>"><ufunc 'bitwise_and'></code>
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<a name="bitwise_or"></a><span class="summary-name">bitwise_or</span> = <code title="<ufunc 'bitwise_or'>"><ufunc 'bitwise_or'></code>
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<a name="bitwise_xor"></a><span class="summary-name">bitwise_xor</span> = <code title="<ufunc 'bitwise_xor'>"><ufunc 'bitwise_xor'></code>
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<a name="ceil"></a><span class="summary-name">ceil</span> = <code title="<ufunc 'ceil'>"><ufunc 'ceil'></code>
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<a name="conjugate"></a><span class="summary-name">conjugate</span> = <code title="<ufunc 'conjugate'>"><ufunc 'conjugate'></code>
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<a name="cos"></a><span class="summary-name">cos</span> = <code title="<ufunc 'cos'>"><ufunc 'cos'></code>
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<a name="cosh"></a><span class="summary-name">cosh</span> = <code title="<ufunc 'cosh'>"><ufunc 'cosh'></code>
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<a name="divide"></a><span class="summary-name">divide</span> = <code title="<ufunc 'divide'>"><ufunc 'divide'></code>
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<a name="divide_safe"></a><span class="summary-name">divide_safe</span> = <code title="<ufunc 'divide_safe'>"><ufunc 'divide_safe'></code>
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<a name="e"></a><span class="summary-name">e</span> = <code title="2.71828182846">2.71828182846</code>
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<a name="equal"></a><span class="summary-name">equal</span> = <code title="<ufunc 'equal'>"><ufunc 'equal'></code>
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<a name="exp"></a><span class="summary-name">exp</span> = <code title="<ufunc 'exp'>"><ufunc 'exp'></code>
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<a name="fabs"></a><span class="summary-name">fabs</span> = <code title="<ufunc 'fabs'>"><ufunc 'fabs'></code>
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<a name="floor"></a><span class="summary-name">floor</span> = <code title="<ufunc 'floor'>"><ufunc 'floor'></code>
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<a name="floor_divide"></a><span class="summary-name">floor_divide</span> = <code title="<ufunc 'floor_divide'>"><ufunc 'floor_divide'></code>
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<a name="fmod"></a><span class="summary-name">fmod</span> = <code title="<ufunc 'fmod'>"><ufunc 'fmod'></code>
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<a name="greater"></a><span class="summary-name">greater</span> = <code title="<ufunc 'greater'>"><ufunc 'greater'></code>
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<a name="greater_equal"></a><span class="summary-name">greater_equal</span> = <code title="<ufunc 'greater_equal'>"><ufunc 'greater_equal'></code>
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<a name="hypot"></a><span class="summary-name">hypot</span> = <code title="<ufunc 'hypot'>"><ufunc 'hypot'></code>
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<a name="invert"></a><span class="summary-name">invert</span> = <code title="<ufunc 'invert'>"><ufunc 'invert'></code>
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<a name="left_shift"></a><span class="summary-name">left_shift</span> = <code title="<ufunc 'left_shift'>"><ufunc 'left_shift'></code>
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<a name="less"></a><span class="summary-name">less</span> = <code title="<ufunc 'less'>"><ufunc 'less'></code>
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<a name="less_equal"></a><span class="summary-name">less_equal</span> = <code title="<ufunc 'less_equal'>"><ufunc 'less_equal'></code>
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<a name="log"></a><span class="summary-name">log</span> = <code title="<ufunc 'log'>"><ufunc 'log'></code>
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<a name="log10"></a><span class="summary-name">log10</span> = <code title="<ufunc 'log10'>"><ufunc 'log10'></code>
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<a name="logical_and"></a><span class="summary-name">logical_and</span> = <code title="<ufunc 'logical_and'>"><ufunc 'logical_and'></code>
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<a name="logical_not"></a><span class="summary-name">logical_not</span> = <code title="<ufunc 'logical_not'>"><ufunc 'logical_not'></code>
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<a name="logical_or"></a><span class="summary-name">logical_or</span> = <code title="<ufunc 'logical_or'>"><ufunc 'logical_or'></code>
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<a name="logical_xor"></a><span class="summary-name">logical_xor</span> = <code title="<ufunc 'logical_xor'>"><ufunc 'logical_xor'></code>
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<a name="maximum"></a><span class="summary-name">maximum</span> = <code title="<ufunc 'maximum'>"><ufunc 'maximum'></code>
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<a name="minimum"></a><span class="summary-name">minimum</span> = <code title="<ufunc 'minimum'>"><ufunc 'minimum'></code>
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<a name="multiply"></a><span class="summary-name">multiply</span> = <code title="<ufunc 'multiply'>"><ufunc 'multiply'></code>
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<a name="negative"></a><span class="summary-name">negative</span> = <code title="<ufunc 'negative'>"><ufunc 'negative'></code>
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<span class="summary-type"> </span>
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<a name="not_equal"></a><span class="summary-name">not_equal</span> = <code title="<ufunc 'not_equal'>"><ufunc 'not_equal'></code>
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<span class="summary-type"> </span>
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<a name="pi"></a><span class="summary-name">pi</span> = <code title="3.14159265359">3.14159265359</code>
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<span class="summary-type"> </span>
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<a name="power"></a><span class="summary-name">power</span> = <code title="<ufunc 'power'>"><ufunc 'power'></code>
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<span class="summary-type"> </span>
</td><td class="summary">
<a name="remainder"></a><span class="summary-name">remainder</span> = <code title="<ufunc 'remainder'>"><ufunc 'remainder'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="right_shift"></a><span class="summary-name">right_shift</span> = <code title="<ufunc 'right_shift'>"><ufunc 'right_shift'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="sin"></a><span class="summary-name">sin</span> = <code title="<ufunc 'sin'>"><ufunc 'sin'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="sinh"></a><span class="summary-name">sinh</span> = <code title="<ufunc 'sinh'>"><ufunc 'sinh'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="sqrt"></a><span class="summary-name">sqrt</span> = <code title="<ufunc 'sqrt'>"><ufunc 'sqrt'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="subtract"></a><span class="summary-name">subtract</span> = <code title="<ufunc 'subtract'>"><ufunc 'subtract'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="tan"></a><span class="summary-name">tan</span> = <code title="<ufunc 'tan'>"><ufunc 'tan'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="tanh"></a><span class="summary-name">tanh</span> = <code title="<ufunc 'tanh'>"><ufunc 'tanh'></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a name="true_divide"></a><span class="summary-name">true_divide</span> = <code title="<ufunc 'true_divide'>"><ufunc 'true_divide'></code>
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