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<a href="Bio-module.html">Package Bio</a> ::
Package MetaTool
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<h1 class="epydoc">Package MetaTool</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.MetaTool-pysrc.html">source code</a></span></p>
<p>Parser for output from MetaTool, a program which defines metabolic
routes within networks.</p>
<p>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&
list_uids=10222413&dopt=Abstract</p>
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<li> <strong class="uidlink"><a href="Bio.MetaTool.Input-module.html">Bio.MetaTool.Input</a></strong>: <em class="summary">This module provides code to convert Bio.Pathway.System objects
into a text file that can be used as input for the MetaTool
program.</em> </li>
<li> <strong class="uidlink"><a href="Bio.MetaTool.Record-module.html">Bio.MetaTool.Record</a></strong>: <em class="summary">Hold MetaTool data in a straightforward format.</em> </li>
<li> <strong class="uidlink"><a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a></strong>: <em class="summary">Martel based parser to read MetaTool output files.</em> </li>
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<a href="Bio.MetaTool.Iterator-class.html" class="summary-name">Iterator</a><br />
Iterator interface to move over a file of MetaTool entries one at a
time.
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<a href="Bio.MetaTool._RecordConsumer-class.html" class="summary-name" onclick="show_private();">_RecordConsumer</a><br />
Create a MetaTool Record object from scanner generated information.
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<a href="Bio.MetaTool._Scanner-class.html" class="summary-name" onclick="show_private();">_Scanner</a><br />
Start up Martel to do the scanning of the file.
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<a href="Bio.MetaTool.RecordParser-class.html" class="summary-name">RecordParser</a><br />
Parse MetaTool files into Record objects
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<td><span class="summary-sig"><a href="Bio.MetaTool-module.html#_strip_and_combine" class="summary-sig-name" onclick="show_private();">_strip_and_combine</a>(<span class="summary-sig-arg">line_list</span>)</span><br />
Combine multiple lines of content separated by spaces.</td>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">_strip_and_combine</span>(<span class="sig-arg">line_list</span>)</span>
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<p>Combine multiple lines of content separated by spaces.</p>
<p>This function is used by the EventGenerator callback function to
combine multiple lines of information. The lines are first stripped to
remove whitepsace, and then combined so they are separated by a space.
This is a simple minded way to combine lines, but should work for most
cases.</p>
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