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<a href="Bio-module.html">Package Bio</a> ::
Package Medline
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<h1 class="epydoc">Source Code for <a href="Bio.Medline-module.html">Package Bio.Medline</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Copyright 1999 by Jeffrey Chang. All rights reserved.</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># license. Please see the LICENSE file that should have been included</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">This module provides code to work with Medline.</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring">Classes:</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring">Record Holds Medline data.</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring">Iterator Iterates over a file containing Medline records.</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">RecordParser Parses a Medline record into a Record object.</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">_Scanner Scans a Medline record.</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring">_RecordConsumer Consumes Medline data to a Record object.</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Module Bio.File=Bio.File-module.html"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-1', 'File', 'link-1');">File</a></tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-2', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Module Bio.ParserSupport=Bio.ParserSupport-module.html"><a title="Bio.ParserSupport" class="py-name" href="#" onclick="return doclink('link-3', 'ParserSupport', 'link-3');">ParserSupport</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
<a name="Record"></a><div id="Record-def"><a name="L22"></a><tt class="py-lineno"> 22</tt> <a class="py-toggle" href="#" id="Record-toggle" onclick="return toggle('Record');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.Medline.Record-class.html">Record</a><tt class="py-op">:</tt> </tt>
</div><div id="Record-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Record-expanded"><a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-docstring">"""Holds information from a Medline record.</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-docstring"> Members:</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-docstring"> id Medline ID.</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-docstring"> pubmed_id Pubmed ID.</tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-docstring"> mesh_headings List of MeSH headings.</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-docstring"> mesh_tree_numbers List of MeSH Tree Numbers.</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-docstring"> mesh_subheadings List of MeSH subheadings.</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-docstring"> abstract The abstract.</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-docstring"> comments List of references to comments.</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-docstring"> abstract_author The author of the abstract.</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-docstring"> english_abstract "A" if a foreign article has an english abstract.</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt class="py-docstring"> source Bibliographic information.</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-docstring"> publication_types List of type of publication.</tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt class="py-docstring"> number_of_references Number of bibliographic references, for REVIEW pubs.</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"><tt class="py-docstring"> authors List of authors.</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"><tt class="py-docstring"> no_author "A" for anonymous.</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt class="py-docstring"> address Address of the first author.</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt class="py-docstring"> journal_title_code Three-character code assigned to the journal.</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"><tt class="py-docstring"> title_abbreviation Abbreviation of journal title.</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt class="py-docstring"> issn International Standard Serial Number.</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt class="py-docstring"> journal_subsets List of strings that describe journal groupings.</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt class="py-docstring"> country Country of publication</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"><tt class="py-docstring"> languages List of languages of the article.</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-docstring"> title Article title.</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-docstring"> transliterated_title Title in the original language.</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt class="py-docstring"> call_number The call number of the journal issue.</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-docstring"> issue_part_supplement Issue, part, or supplement of journal published.</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt class="py-docstring"> volume_issue Volume number of journal.</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"><tt class="py-docstring"> publication_date Date published (string).</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt class="py-docstring"> year Year published (string).</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"><tt class="py-docstring"> pagination Inclusive pages of an indexed item.</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"><tt class="py-docstring"> special_list Coding for the database of the citation.</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt class="py-docstring"> substance_name Preferred name for a chemical or drug.</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt class="py-docstring"> gene_symbols List of abbreviated gene names.</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"><tt class="py-docstring"> secondary_source_ids List of source databanks and accessions.</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"><tt class="py-docstring"> identifications List of research grant or contract numbers.</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"><tt class="py-docstring"> registry_numbers List of CAS or EC numbers.</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"><tt class="py-docstring"> personal_name_as_subjects List of individuals who are subjects.</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt class="py-docstring"> record_originators List of people who worked on record.</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt class="py-docstring"> entry_date Date record made machine readable (YYMMDD).</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt class="py-docstring"> entry_month YYMM entered into Medline.</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt class="py-docstring"> class_update_date Date touched by Class Maintenance action (string).</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-docstring"> last_revision_date Date for minor revision.</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-docstring"> major_revision_date Date for major revision.</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-docstring"> undefined List of lines that don't match the standard.</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="Record.__init__"></a><div id="Record.__init__-def"><a name="L82"></a><tt class="py-lineno"> 82</tt> <a class="py-toggle" href="#" id="Record.__init__-toggle" onclick="return toggle('Record.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline.Record-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Record.__init__-expanded"><a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Variable Bio.Data.CodonTable.id=Bio.Data.CodonTable-module.html#id,Variable Bio.Encodings.IUPACEncoding.id=Bio.Encodings.IUPACEncoding-module.html#id,Method Bio.GFF.Feature.id()=Bio.GFF.Feature-class.html#id"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-4', 'id', 'link-4');">id</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.pubmed_id()=Bio.GenBank._FeatureConsumer-class.html#pubmed_id,Method Bio.GenBank._RecordConsumer.pubmed_id()=Bio.GenBank._RecordConsumer-class.html#pubmed_id,Method Bio.Medline._RecordConsumer.pubmed_id()=Bio.Medline._RecordConsumer-class.html#pubmed_id"><a title="Bio.GenBank._FeatureConsumer.pubmed_id
Bio.GenBank._RecordConsumer.pubmed_id
Bio.Medline._RecordConsumer.pubmed_id" class="py-name" href="#" onclick="return doclink('link-5', 'pubmed_id', 'link-5');">pubmed_id</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mesh_headings</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mesh_tree_numbers</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mesh_subheadings</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Method Bio.Medline._RecordConsumer.abstract()=Bio.Medline._RecordConsumer-class.html#abstract"><a title="Bio.Medline._RecordConsumer.abstract" class="py-name" href="#" onclick="return doclink('link-6', 'abstract', 'link-6');">abstract</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method Bio.Emboss.Primer._Primer3RecordConsumer.comments()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#comments,Variable Bio.Emboss.primer3_format.comments=Bio.Emboss.primer3_format-module.html#comments,Method Bio.Medline._RecordConsumer.comments()=Bio.Medline._RecordConsumer-class.html#comments"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.comments
Bio.Emboss.primer3_format.comments
Bio.Medline._RecordConsumer.comments" class="py-name" href="#" onclick="return doclink('link-7', 'comments', 'link-7');">comments</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Method Bio.Medline._RecordConsumer.abstract_author()=Bio.Medline._RecordConsumer-class.html#abstract_author"><a title="Bio.Medline._RecordConsumer.abstract_author" class="py-name" href="#" onclick="return doclink('link-8', 'abstract_author', 'link-8');">abstract_author</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method Bio.Medline._RecordConsumer.english_abstract()=Bio.Medline._RecordConsumer-class.html#english_abstract"><a title="Bio.Medline._RecordConsumer.english_abstract" class="py-name" href="#" onclick="return doclink('link-9', 'english_abstract', 'link-9');">english_abstract</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.source()=Bio.GenBank._FeatureConsumer-class.html#source,Method Bio.GenBank._RecordConsumer.source()=Bio.GenBank._RecordConsumer-class.html#source,Method Bio.Medline._RecordConsumer.source()=Bio.Medline._RecordConsumer-class.html#source,Method Bio.Pathway.Network.source()=Bio.Pathway.Network-class.html#source,Method Bio.Rebase._RecordConsumer.source()=Bio.Rebase._RecordConsumer-class.html#source"><a title="Bio.GenBank._FeatureConsumer.source
Bio.GenBank._RecordConsumer.source
Bio.Medline._RecordConsumer.source
Bio.Pathway.Network.source
Bio.Rebase._RecordConsumer.source" class="py-name" href="#" onclick="return doclink('link-10', 'source', 'link-10');">source</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">publication_types</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Method Bio.Medline._RecordConsumer.number_of_references()=Bio.Medline._RecordConsumer-class.html#number_of_references"><a title="Bio.Medline._RecordConsumer.number_of_references" class="py-name" href="#" onclick="return doclink('link-11', 'number_of_references', 'link-11');">number_of_references</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.authors()=Bio.GenBank._FeatureConsumer-class.html#authors,Method Bio.GenBank._RecordConsumer.authors()=Bio.GenBank._RecordConsumer-class.html#authors"><a title="Bio.GenBank._FeatureConsumer.authors
Bio.GenBank._RecordConsumer.authors" class="py-name" href="#" onclick="return doclink('link-12', 'authors', 'link-12');">authors</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Method Bio.Medline._RecordConsumer.no_author()=Bio.Medline._RecordConsumer-class.html#no_author"><a title="Bio.Medline._RecordConsumer.no_author" class="py-name" href="#" onclick="return doclink('link-13', 'no_author', 'link-13');">no_author</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method Bio.Medline._RecordConsumer.address()=Bio.Medline._RecordConsumer-class.html#address"><a title="Bio.Medline._RecordConsumer.address" class="py-name" href="#" onclick="return doclink('link-14', 'address', 'link-14');">address</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Method Bio.Medline._RecordConsumer.journal_title_code()=Bio.Medline._RecordConsumer-class.html#journal_title_code"><a title="Bio.Medline._RecordConsumer.journal_title_code" class="py-name" href="#" onclick="return doclink('link-15', 'journal_title_code', 'link-15');">journal_title_code</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name" targets="Method Bio.Medline._RecordConsumer.title_abbreviation()=Bio.Medline._RecordConsumer-class.html#title_abbreviation"><a title="Bio.Medline._RecordConsumer.title_abbreviation" class="py-name" href="#" onclick="return doclink('link-16', 'title_abbreviation', 'link-16');">title_abbreviation</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Method Bio.Medline._RecordConsumer.issn()=Bio.Medline._RecordConsumer-class.html#issn"><a title="Bio.Medline._RecordConsumer.issn" class="py-name" href="#" onclick="return doclink('link-17', 'issn', 'link-17');">issn</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">journal_subsets</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name" targets="Method Bio.Medline._RecordConsumer.country()=Bio.Medline._RecordConsumer-class.html#country"><a title="Bio.Medline._RecordConsumer.country" class="py-name" href="#" onclick="return doclink('link-18', 'country', 'link-18');">country</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">languages</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Method Bio.Blast.NCBIStandalone._AlignmentConsumer.title()=Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title,Method Bio.GenBank._FeatureConsumer.title()=Bio.GenBank._FeatureConsumer-class.html#title,Method Bio.GenBank._RecordConsumer.title()=Bio.GenBank._RecordConsumer-class.html#title,Method Bio.Medline._RecordConsumer.title()=Bio.Medline._RecordConsumer-class.html#title,Variable Bio.expressions.fasta.title=Bio.expressions.fasta-module.html#title"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.title
Bio.GenBank._FeatureConsumer.title
Bio.GenBank._RecordConsumer.title
Bio.Medline._RecordConsumer.title
Bio.expressions.fasta.title" class="py-name" href="#" onclick="return doclink('link-19', 'title', 'link-19');">title</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Method Bio.Medline._RecordConsumer.transliterated_title()=Bio.Medline._RecordConsumer-class.html#transliterated_title"><a title="Bio.Medline._RecordConsumer.transliterated_title" class="py-name" href="#" onclick="return doclink('link-20', 'transliterated_title', 'link-20');">transliterated_title</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Method Bio.Medline._RecordConsumer.call_number()=Bio.Medline._RecordConsumer-class.html#call_number"><a title="Bio.Medline._RecordConsumer.call_number" class="py-name" href="#" onclick="return doclink('link-21', 'call_number', 'link-21');">call_number</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method Bio.Medline._RecordConsumer.issue_part_supplement()=Bio.Medline._RecordConsumer-class.html#issue_part_supplement"><a title="Bio.Medline._RecordConsumer.issue_part_supplement" class="py-name" href="#" onclick="return doclink('link-22', 'issue_part_supplement', 'link-22');">issue_part_supplement</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Method Bio.Medline._RecordConsumer.volume_issue()=Bio.Medline._RecordConsumer-class.html#volume_issue"><a title="Bio.Medline._RecordConsumer.volume_issue" class="py-name" href="#" onclick="return doclink('link-23', 'volume_issue', 'link-23');">volume_issue</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name" targets="Method Bio.Medline._RecordConsumer.publication_date()=Bio.Medline._RecordConsumer-class.html#publication_date"><a title="Bio.Medline._RecordConsumer.publication_date" class="py-name" href="#" onclick="return doclink('link-24', 'publication_date', 'link-24');">publication_date</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Method Bio.Medline._RecordConsumer.year()=Bio.Medline._RecordConsumer-class.html#year"><a title="Bio.Medline._RecordConsumer.year" class="py-name" href="#" onclick="return doclink('link-25', 'year', 'link-25');">year</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Method Bio.Medline._RecordConsumer.pagination()=Bio.Medline._RecordConsumer-class.html#pagination"><a title="Bio.Medline._RecordConsumer.pagination" class="py-name" href="#" onclick="return doclink('link-26', 'pagination', 'link-26');">pagination</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name" targets="Method Bio.Medline._RecordConsumer.special_list()=Bio.Medline._RecordConsumer-class.html#special_list"><a title="Bio.Medline._RecordConsumer.special_list" class="py-name" href="#" onclick="return doclink('link-27', 'special_list', 'link-27');">special_list</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method Bio.Medline._RecordConsumer.substance_name()=Bio.Medline._RecordConsumer-class.html#substance_name"><a title="Bio.Medline._RecordConsumer.substance_name" class="py-name" href="#" onclick="return doclink('link-28', 'substance_name', 'link-28');">substance_name</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">gene_symbols</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">secondary_source_ids</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">identifications</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">registry_numbers</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">personal_name_as_subjects</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record_originators</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method Bio.Medline._RecordConsumer.entry_date()=Bio.Medline._RecordConsumer-class.html#entry_date"><a title="Bio.Medline._RecordConsumer.entry_date" class="py-name" href="#" onclick="return doclink('link-29', 'entry_date', 'link-29');">entry_date</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Method Bio.Medline._RecordConsumer.entry_month()=Bio.Medline._RecordConsumer-class.html#entry_month"><a title="Bio.Medline._RecordConsumer.entry_month" class="py-name" href="#" onclick="return doclink('link-30', 'entry_month', 'link-30');">entry_month</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name" targets="Method Bio.Medline._RecordConsumer.class_update_date()=Bio.Medline._RecordConsumer-class.html#class_update_date"><a title="Bio.Medline._RecordConsumer.class_update_date" class="py-name" href="#" onclick="return doclink('link-31', 'class_update_date', 'link-31');">class_update_date</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name" targets="Method Bio.Medline._RecordConsumer.last_revision_date()=Bio.Medline._RecordConsumer-class.html#last_revision_date"><a title="Bio.Medline._RecordConsumer.last_revision_date" class="py-name" href="#" onclick="return doclink('link-32', 'last_revision_date', 'link-32');">last_revision_date</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name" targets="Method Bio.Medline._RecordConsumer.major_revision_date()=Bio.Medline._RecordConsumer-class.html#major_revision_date"><a title="Bio.Medline._RecordConsumer.major_revision_date" class="py-name" href="#" onclick="return doclink('link-33', 'major_revision_date', 'link-33');">major_revision_date</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method Bio.Medline._RecordConsumer.undefined()=Bio.Medline._RecordConsumer-class.html#undefined"><a title="Bio.Medline._RecordConsumer.undefined" class="py-name" href="#" onclick="return doclink('link-34', 'undefined', 'link-34');">undefined</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
</div></div><a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> </tt>
<a name="Iterator"></a><div id="Iterator-def"><a name="L138"></a><tt class="py-lineno">138</tt> <a class="py-toggle" href="#" id="Iterator-toggle" onclick="return toggle('Iterator');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.Medline.Iterator-class.html">Iterator</a><tt class="py-op">:</tt> </tt>
</div><div id="Iterator-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Iterator-expanded"><a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-docstring">"""Returns one record at a time from a file of Medline records.</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"><tt class="py-docstring"> Methods:</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"><tt class="py-docstring"> next Return the next record from the stream, or None.</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="Iterator.__init__"></a><div id="Iterator.__init__-def"><a name="L145"></a><tt class="py-lineno">145</tt> <a class="py-toggle" href="#" id="Iterator.__init__-toggle" onclick="return toggle('Iterator.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline.Iterator-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt><tt class="py-op">,</tt> <tt class="py-param">parser</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Iterator.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Iterator.__init__-expanded"><a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-docstring">"""__init__(self, handle, parser=None)</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"><tt class="py-docstring"> Create a new iterator. handle is a file-like object. parser</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-docstring"> is an optional Parser object to change the results into another form.</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-docstring"> If set to None, then the raw contents of the file will be returned.</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_handle</tt> <tt class="py-op">=</tt> <tt id="link-35" class="py-name" targets="Variable Bio.LocusLink.web_parse.handle=Bio.LocusLink.web_parse-module.html#handle,Variable Bio.Ndb.handle=Bio.Ndb-module.html#handle"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-35', 'handle', 'link-35');">handle</a></tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_parser</tt> <tt class="py-op">=</tt> <tt class="py-name">parser</tt> </tt>
</div><a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> </tt>
<a name="Iterator.__iter__"></a><div id="Iterator.__iter__-def"><a name="L156"></a><tt class="py-lineno">156</tt> <a class="py-toggle" href="#" id="Iterator.__iter__-toggle" onclick="return toggle('Iterator.__iter__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline.Iterator-class.html#__iter__">__iter__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Iterator.__iter__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Iterator.__iter__-expanded"><a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
</div><a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> </tt>
<a name="Iterator.next"></a><div id="Iterator.next-def"><a name="L159"></a><tt class="py-lineno">159</tt> <a class="py-toggle" href="#" id="Iterator.next-toggle" onclick="return toggle('Iterator.next');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline.Iterator-class.html#next">next</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Iterator.next-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Iterator.next-expanded"><a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-docstring">"""next(self) -> object</tt> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"><tt class="py-docstring"> Return the next medline record from the file. If no more records,</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"><tt class="py-docstring"> return None.</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-name">lines</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-36', 'handle', 'link-35');">handle</a></tt><tt class="py-op">:</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">lines</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name" targets="Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.EUtils.POM.ElementNode.append()=Bio.EUtils.POM.ElementNode-class.html#append,Method Bio.EUtils.sourcegen.SourceFile.append()=Bio.EUtils.sourcegen.SourceFile-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append,Method Martel.msre_parse.SubPattern.append()=Martel.msre_parse.SubPattern-class.html#append"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-37', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name" targets="Class Bio.EUtils.DTDs.LinkOut.strip=Bio.EUtils.DTDs.LinkOut.strip-class.html,Method Bio.File.SGMLStripper.strip()=Bio.File.SGMLStripper-class.html#strip,Method Bio.SGMLExtractor.SGMLExtractor.strip()=Bio.SGMLExtractor.SGMLExtractor-class.html#strip"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-38', 'strip', 'link-38');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">==</tt><tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">StopIteration</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt id="link-39" class="py-name" targets="Variable BioSQL.BioSeq.DBSeq.data=BioSQL.BioSeq.DBSeq-class.html#data"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-39', 'data', 'link-39');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lines</tt><tt class="py-op">)</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_parser</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_parser</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Method Bio.ParserSupport.AbstractParser.parse_str()=Bio.ParserSupport.AbstractParser-class.html#parse_str"><a title="Bio.ParserSupport.AbstractParser.parse_str" class="py-name" href="#" onclick="return doclink('link-40', 'parse_str', 'link-40');">parse_str</a></tt><tt class="py-op">(</tt><tt id="link-41" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-41', 'data', 'link-39');">data</a></tt><tt class="py-op">)</tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-42" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-42', 'data', 'link-39');">data</a></tt> </tt>
</div></div><a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> </tt>
<a name="RecordParser"></a><div id="RecordParser-def"><a name="L180"></a><tt class="py-lineno">180</tt> <a class="py-toggle" href="#" id="RecordParser-toggle" onclick="return toggle('RecordParser');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.Medline.RecordParser-class.html">RecordParser</a><tt class="py-op">(</tt><tt class="py-base-class">AbstractParser</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RecordParser-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="RecordParser-expanded"><a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-docstring">"""Parses Medline data into a Record object.</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="RecordParser.__init__"></a><div id="RecordParser.__init__-def"><a name="L184"></a><tt class="py-lineno">184</tt> <a class="py-toggle" href="#" id="RecordParser.__init__-toggle" onclick="return toggle('RecordParser.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline.RecordParser-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RecordParser.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="RecordParser.__init__-expanded"><a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_scanner</tt> <tt class="py-op">=</tt> <tt id="link-43" class="py-name" targets="Class Bio.Blast.NCBIStandalone._Scanner=Bio.Blast.NCBIStandalone._Scanner-class.html,Class Bio.Blast.NCBIWWW._Scanner=Bio.Blast.NCBIWWW._Scanner-class.html,Class Bio.CDD._Scanner=Bio.CDD._Scanner-class.html,Class Bio.Compass._Scanner=Bio.Compass._Scanner-class.html,Class Bio.ECell._Scanner=Bio.ECell._Scanner-class.html,Class Bio.Enzyme._Scanner=Bio.Enzyme._Scanner-class.html,Class Bio.Gobase._Scanner=Bio.Gobase._Scanner-class.html,Class Bio.IntelliGenetics._Scanner=Bio.IntelliGenetics._Scanner-class.html,Class Bio.LocusLink._Scanner=Bio.LocusLink._Scanner-class.html,Class Bio.Medline._Scanner=Bio.Medline._Scanner-class.html,Class Bio.MetaTool._Scanner=Bio.MetaTool._Scanner-class.html,Class Bio.NBRF._Scanner=Bio.NBRF._Scanner-class.html,Class Bio.PopGen.FDist._Scanner=Bio.PopGen.FDist._Scanner-class.html,Class Bio.PopGen.GenePop._Scanner=Bio.PopGen.GenePop._Scanner-class.html,Class Bio.Prosite.Prodoc._Scanner=Bio.Prosite.Prodoc._Scanner-class.html,Class Bio.Prosite._Scanner=Bio.Prosite._Scanner-class.html,Class Bio.Rebase._Scanner=Bio.Rebase._Scanner-class.html,Class Bio.Saf._Scanner=Bio.Saf._Scanner-class.html,Class Bio.Sequencing.Ace._Scanner=Bio.Sequencing.Ace._Scanner-class.html,Class Bio.Sequencing.Phd._Scanner=Bio.Sequencing.Phd._Scanner-class.html,Class Bio.SwissProt.KeyWList._Scanner=Bio.SwissProt.KeyWList._Scanner-class.html,Class Bio.SwissProt.SProt._Scanner=Bio.SwissProt.SProt._Scanner-class.html,Class Bio.UniGene._Scanner=Bio.UniGene._Scanner-class.html"><a title="Bio.Blast.NCBIStandalone._Scanner
Bio.Blast.NCBIWWW._Scanner
Bio.CDD._Scanner
Bio.Compass._Scanner
Bio.ECell._Scanner
Bio.Enzyme._Scanner
Bio.Gobase._Scanner
Bio.IntelliGenetics._Scanner
Bio.LocusLink._Scanner
Bio.Medline._Scanner
Bio.MetaTool._Scanner
Bio.NBRF._Scanner
Bio.PopGen.FDist._Scanner
Bio.PopGen.GenePop._Scanner
Bio.Prosite.Prodoc._Scanner
Bio.Prosite._Scanner
Bio.Rebase._Scanner
Bio.Saf._Scanner
Bio.Sequencing.Ace._Scanner
Bio.Sequencing.Phd._Scanner
Bio.SwissProt.KeyWList._Scanner
Bio.SwissProt.SProt._Scanner
Bio.UniGene._Scanner" class="py-name" href="#" onclick="return doclink('link-43', '_Scanner', 'link-43');">_Scanner</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_consumer</tt> <tt class="py-op">=</tt> <tt id="link-44" class="py-name" targets="Class Bio.CDD._RecordConsumer=Bio.CDD._RecordConsumer-class.html,Class Bio.ECell._RecordConsumer=Bio.ECell._RecordConsumer-class.html,Class Bio.Enzyme._RecordConsumer=Bio.Enzyme._RecordConsumer-class.html,Class Bio.GenBank._RecordConsumer=Bio.GenBank._RecordConsumer-class.html,Class Bio.Gobase._RecordConsumer=Bio.Gobase._RecordConsumer-class.html,Class Bio.IntelliGenetics._RecordConsumer=Bio.IntelliGenetics._RecordConsumer-class.html,Class Bio.LocusLink._RecordConsumer=Bio.LocusLink._RecordConsumer-class.html,Class Bio.Medline._RecordConsumer=Bio.Medline._RecordConsumer-class.html,Class Bio.MetaTool._RecordConsumer=Bio.MetaTool._RecordConsumer-class.html,Class Bio.NBRF._RecordConsumer=Bio.NBRF._RecordConsumer-class.html,Class Bio.PopGen.FDist._RecordConsumer=Bio.PopGen.FDist._RecordConsumer-class.html,Class Bio.PopGen.GenePop._RecordConsumer=Bio.PopGen.GenePop._RecordConsumer-class.html,Class Bio.Prosite.Prodoc._RecordConsumer=Bio.Prosite.Prodoc._RecordConsumer-class.html,Class Bio.Prosite._RecordConsumer=Bio.Prosite._RecordConsumer-class.html,Class Bio.Rebase._RecordConsumer=Bio.Rebase._RecordConsumer-class.html,Class Bio.Saf._RecordConsumer=Bio.Saf._RecordConsumer-class.html,Class Bio.Sequencing.Ace._RecordConsumer=Bio.Sequencing.Ace._RecordConsumer-class.html,Class Bio.Sequencing.Phd._RecordConsumer=Bio.Sequencing.Phd._RecordConsumer-class.html,Class Bio.SwissProt.SProt._RecordConsumer=Bio.SwissProt.SProt._RecordConsumer-class.html,Class Bio.UniGene._RecordConsumer=Bio.UniGene._RecordConsumer-class.html"><a title="Bio.CDD._RecordConsumer
Bio.ECell._RecordConsumer
Bio.Enzyme._RecordConsumer
Bio.GenBank._RecordConsumer
Bio.Gobase._RecordConsumer
Bio.IntelliGenetics._RecordConsumer
Bio.LocusLink._RecordConsumer
Bio.Medline._RecordConsumer
Bio.MetaTool._RecordConsumer
Bio.NBRF._RecordConsumer
Bio.PopGen.FDist._RecordConsumer
Bio.PopGen.GenePop._RecordConsumer
Bio.Prosite.Prodoc._RecordConsumer
Bio.Prosite._RecordConsumer
Bio.Rebase._RecordConsumer
Bio.Saf._RecordConsumer
Bio.Sequencing.Ace._RecordConsumer
Bio.Sequencing.Phd._RecordConsumer
Bio.SwissProt.SProt._RecordConsumer
Bio.UniGene._RecordConsumer" class="py-name" href="#" onclick="return doclink('link-44', '_RecordConsumer', 'link-44');">_RecordConsumer</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> </tt>
<a name="RecordParser.parse"></a><div id="RecordParser.parse-def"><a name="L188"></a><tt class="py-lineno">188</tt> <a class="py-toggle" href="#" id="RecordParser.parse-toggle" onclick="return toggle('RecordParser.parse');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline.RecordParser-class.html#parse">parse</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RecordParser.parse-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="RecordParser.parse-expanded"><a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_scanner</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Method Bio.Affy.CelFile.CelScanner.feed()=Bio.Affy.CelFile.CelScanner-class.html#feed,Method Bio.AlignAce.Scanner.AlignAceScanner.feed()=Bio.AlignAce.Scanner.AlignAceScanner-class.html#feed,Method Bio.AlignAce.Scanner.CompareAceScanner.feed()=Bio.AlignAce.Scanner.CompareAceScanner-class.html#feed,Method Bio.Blast.NCBIStandalone._Scanner.feed()=Bio.Blast.NCBIStandalone._Scanner-class.html#feed,Method Bio.Blast.NCBIWWW._Scanner.feed()=Bio.Blast.NCBIWWW._Scanner-class.html#feed,Method Bio.CDD._Scanner.feed()=Bio.CDD._Scanner-class.html#feed,Method Bio.Compass._Scanner.feed()=Bio.Compass._Scanner-class.html#feed,Method Bio.ECell._Scanner.feed()=Bio.ECell._Scanner-class.html#feed,Method Bio.Emboss.Primer._Primer3Scanner.feed()=Bio.Emboss.Primer._Primer3Scanner-class.html#feed,Method Bio.Emboss.Primer._PrimerSearchScanner.feed()=Bio.Emboss.Primer._PrimerSearchScanner-class.html#feed,Method Bio.Enzyme._Scanner.feed()=Bio.Enzyme._Scanner-class.html#feed,Method Bio.GenBank.Scanner.InsdcScanner.feed()=Bio.GenBank.Scanner.InsdcScanner-class.html#feed,Method Bio.Gobase._Scanner.feed()=Bio.Gobase._Scanner-class.html#feed,Method Bio.IntelliGenetics._Scanner.feed()=Bio.IntelliGenetics._Scanner-class.html#feed,Method Bio.InterPro.InterProParser.feed()=Bio.InterPro.InterProParser-class.html#feed,Method Bio.LocusLink._Scanner.feed()=Bio.LocusLink._Scanner-class.html#feed,Method Bio.LocusLink.web_parse.LocusLinkParser.feed()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#feed,Method Bio.MEME.Parser._MASTScanner.feed()=Bio.MEME.Parser._MASTScanner-class.html#feed,Method Bio.MEME.Parser._MEMEScanner.feed()=Bio.MEME.Parser._MEMEScanner-class.html#feed,Method Bio.Medline._Scanner.feed()=Bio.Medline._Scanner-class.html#feed,Method Bio.MetaTool._Scanner.feed()=Bio.MetaTool._Scanner-class.html#feed,Method Bio.NBRF._Scanner.feed()=Bio.NBRF._Scanner-class.html#feed,Method Bio.Ndb.NdbParser.feed()=Bio.Ndb.NdbParser-class.html#feed,Method Bio.NetCatch.ExtractUrls.feed()=Bio.NetCatch.ExtractUrls-class.html#feed,Method Bio.PopGen.FDist._Scanner.feed()=Bio.PopGen.FDist._Scanner-class.html#feed,Method Bio.PopGen.GenePop._Scanner.feed()=Bio.PopGen.GenePop._Scanner-class.html#feed,Method Bio.Prosite.Prodoc._Scanner.feed()=Bio.Prosite.Prodoc._Scanner-class.html#feed,Method Bio.Prosite._Scanner.feed()=Bio.Prosite._Scanner-class.html#feed,Method Bio.Rebase._Scanner.feed()=Bio.Rebase._Scanner-class.html#feed,Method Bio.Saf._Scanner.feed()=Bio.Saf._Scanner-class.html#feed,Method Bio.Sequencing.Ace._Scanner.feed()=Bio.Sequencing.Ace._Scanner-class.html#feed,Method Bio.Sequencing.Phd._Scanner.feed()=Bio.Sequencing.Phd._Scanner-class.html#feed,Method Bio.SwissProt.KeyWList._Scanner.feed()=Bio.SwissProt.KeyWList._Scanner-class.html#feed,Method Bio.SwissProt.SProt._Scanner.feed()=Bio.SwissProt.SProt._Scanner-class.html#feed,Method Bio.UniGene._Scanner.feed()=Bio.UniGene._Scanner-class.html#feed"><a title="Bio.Affy.CelFile.CelScanner.feed
Bio.AlignAce.Scanner.AlignAceScanner.feed
Bio.AlignAce.Scanner.CompareAceScanner.feed
Bio.Blast.NCBIStandalone._Scanner.feed
Bio.Blast.NCBIWWW._Scanner.feed
Bio.CDD._Scanner.feed
Bio.Compass._Scanner.feed
Bio.ECell._Scanner.feed
Bio.Emboss.Primer._Primer3Scanner.feed
Bio.Emboss.Primer._PrimerSearchScanner.feed
Bio.Enzyme._Scanner.feed
Bio.GenBank.Scanner.InsdcScanner.feed
Bio.Gobase._Scanner.feed
Bio.IntelliGenetics._Scanner.feed
Bio.InterPro.InterProParser.feed
Bio.LocusLink._Scanner.feed
Bio.LocusLink.web_parse.LocusLinkParser.feed
Bio.MEME.Parser._MASTScanner.feed
Bio.MEME.Parser._MEMEScanner.feed
Bio.Medline._Scanner.feed
Bio.MetaTool._Scanner.feed
Bio.NBRF._Scanner.feed
Bio.Ndb.NdbParser.feed
Bio.NetCatch.ExtractUrls.feed
Bio.PopGen.FDist._Scanner.feed
Bio.PopGen.GenePop._Scanner.feed
Bio.Prosite.Prodoc._Scanner.feed
Bio.Prosite._Scanner.feed
Bio.Rebase._Scanner.feed
Bio.Saf._Scanner.feed
Bio.Sequencing.Ace._Scanner.feed
Bio.Sequencing.Phd._Scanner.feed
Bio.SwissProt.KeyWList._Scanner.feed
Bio.SwissProt.SProt._Scanner.feed
Bio.UniGene._Scanner.feed" class="py-name" href="#" onclick="return doclink('link-45', 'feed', 'link-45');">feed</a></tt><tt class="py-op">(</tt><tt id="link-46" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-46', 'handle', 'link-35');">handle</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_consumer</tt><tt class="py-op">)</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_consumer</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-47', 'data', 'link-39');">data</a></tt> </tt>
</div></div><a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> </tt>
<a name="_Scanner"></a><div id="_Scanner-def"><a name="L192"></a><tt class="py-lineno">192</tt> <a class="py-toggle" href="#" id="_Scanner-toggle" onclick="return toggle('_Scanner');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.Medline._Scanner-class.html">_Scanner</a><tt class="py-op">:</tt> </tt>
</div><div id="_Scanner-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_Scanner-expanded"><a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-docstring">"""Scans a Medline record.</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-comment"># map the category qualifier to an event</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-48" class="py-name" targets="Variable Bio.Medline._Scanner._categories=Bio.Medline._Scanner-class.html#_categories"><a title="Bio.Medline._Scanner._categories" class="py-name" href="#" onclick="return doclink('link-48', '_categories', 'link-48');">_categories</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-string">"AA"</tt> <tt class="py-op">:</tt> <tt class="py-string">"abstract_author"</tt><tt class="py-op">,</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-string">"AB"</tt> <tt class="py-op">:</tt> <tt class="py-string">"abstract"</tt><tt class="py-op">,</tt> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-string">"AD"</tt> <tt class="py-op">:</tt> <tt class="py-string">"address"</tt><tt class="py-op">,</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-string">"AU"</tt> <tt class="py-op">:</tt> <tt class="py-string">"author"</tt><tt class="py-op">,</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-string">"CA"</tt> <tt class="py-op">:</tt> <tt class="py-string">"call_number"</tt><tt class="py-op">,</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-string">"CM"</tt> <tt class="py-op">:</tt> <tt class="py-string">"comments"</tt><tt class="py-op">,</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-string">"CU"</tt> <tt class="py-op">:</tt> <tt class="py-string">"class_update_date"</tt><tt class="py-op">,</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-string">"CY"</tt> <tt class="py-op">:</tt> <tt class="py-string">"country"</tt><tt class="py-op">,</tt> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-string">"DA"</tt> <tt class="py-op">:</tt> <tt class="py-string">"entry_date"</tt><tt class="py-op">,</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-string">"DP"</tt> <tt class="py-op">:</tt> <tt class="py-string">"publication_date"</tt><tt class="py-op">,</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-string">"EA"</tt> <tt class="py-op">:</tt> <tt class="py-string">"english_abstract"</tt><tt class="py-op">,</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-string">"EM"</tt> <tt class="py-op">:</tt> <tt class="py-string">"entry_month"</tt><tt class="py-op">,</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-string">"GS"</tt> <tt class="py-op">:</tt> <tt class="py-string">"gene_symbol"</tt><tt class="py-op">,</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-string">"ID"</tt> <tt class="py-op">:</tt> <tt class="py-string">"identification"</tt><tt class="py-op">,</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-string">"IP"</tt> <tt class="py-op">:</tt> <tt class="py-string">"issue_part_supplement"</tt><tt class="py-op">,</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-string">"IS"</tt> <tt class="py-op">:</tt> <tt class="py-string">"issn"</tt><tt class="py-op">,</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-string">"JC"</tt> <tt class="py-op">:</tt> <tt class="py-string">"journal_title_code"</tt><tt class="py-op">,</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-string">"LA"</tt> <tt class="py-op">:</tt> <tt class="py-string">"language"</tt><tt class="py-op">,</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-string">"LI"</tt> <tt class="py-op">:</tt> <tt class="py-string">"special_list"</tt><tt class="py-op">,</tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-string">"LR"</tt> <tt class="py-op">:</tt> <tt class="py-string">"last_revision_date"</tt><tt class="py-op">,</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-string">"MH"</tt> <tt class="py-op">:</tt> <tt class="py-string">"mesh_heading"</tt><tt class="py-op">,</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-string">"MN"</tt> <tt class="py-op">:</tt> <tt class="py-string">"mesh_tree_number"</tt><tt class="py-op">,</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-string">"MR"</tt> <tt class="py-op">:</tt> <tt class="py-string">"major_revision_date"</tt><tt class="py-op">,</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-string">"NI"</tt> <tt class="py-op">:</tt> <tt class="py-string">"no_author"</tt><tt class="py-op">,</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-string">"NM"</tt> <tt class="py-op">:</tt> <tt class="py-string">"substance_name"</tt><tt class="py-op">,</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-string">"PG"</tt> <tt class="py-op">:</tt> <tt class="py-string">"pagination"</tt><tt class="py-op">,</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-string">"PS"</tt> <tt class="py-op">:</tt> <tt class="py-string">"personal_name_as_subject"</tt><tt class="py-op">,</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-string">"PT"</tt> <tt class="py-op">:</tt> <tt class="py-string">"publication_type"</tt><tt class="py-op">,</tt> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-string">"RF"</tt> <tt class="py-op">:</tt> <tt class="py-string">"number_of_references"</tt><tt class="py-op">,</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-string">"RN"</tt> <tt class="py-op">:</tt> <tt class="py-string">"cas_registry_number"</tt><tt class="py-op">,</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-string">"RO"</tt> <tt class="py-op">:</tt> <tt class="py-string">"record_originator"</tt><tt class="py-op">,</tt> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-string">"SB"</tt> <tt class="py-op">:</tt> <tt class="py-string">"journal_subset"</tt><tt class="py-op">,</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-string">"SH"</tt> <tt class="py-op">:</tt> <tt class="py-string">"subheadings"</tt><tt class="py-op">,</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-string">"SI"</tt> <tt class="py-op">:</tt> <tt class="py-string">"secondary_source_id"</tt><tt class="py-op">,</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-string">"SO"</tt> <tt class="py-op">:</tt> <tt class="py-string">"source"</tt><tt class="py-op">,</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-string">"TA"</tt> <tt class="py-op">:</tt> <tt class="py-string">"title_abbreviation"</tt><tt class="py-op">,</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-string">"TI"</tt> <tt class="py-op">:</tt> <tt class="py-string">"title"</tt><tt class="py-op">,</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-string">"TT"</tt> <tt class="py-op">:</tt> <tt class="py-string">"transliterated_title"</tt><tt class="py-op">,</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-string">"UI"</tt> <tt class="py-op">:</tt> <tt class="py-string">"unique_identifier"</tt><tt class="py-op">,</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-string">"VI"</tt> <tt class="py-op">:</tt> <tt class="py-string">"volume_issue"</tt><tt class="py-op">,</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-string">"YR"</tt> <tt class="py-op">:</tt> <tt class="py-string">"year"</tt><tt class="py-op">,</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-comment"># Not documented.</tt> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-string">"PMID"</tt> <tt class="py-op">:</tt> <tt class="py-string">"pubmed_id"</tt><tt class="py-op">,</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> </tt>
<a name="_Scanner.feed"></a><div id="_Scanner.feed-def"><a name="L244"></a><tt class="py-lineno">244</tt> <a class="py-toggle" href="#" id="_Scanner.feed-toggle" onclick="return toggle('_Scanner.feed');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._Scanner-class.html#feed">feed</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt><tt class="py-op">,</tt> <tt class="py-param">consumer</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_Scanner.feed-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_Scanner.feed-expanded"><a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-docstring">"""feed(self, handle, consumer)</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"><tt class="py-docstring"> Feed in a Medline unit record for scanning. handle is a file-like</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"><tt class="py-docstring"> object that contains a Medline record. consumer is a</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"><tt class="py-docstring"> Consumer object that will receive events as the report is scanned.</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt id="link-49" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-49', 'handle', 'link-35');">handle</a></tt><tt class="py-op">,</tt> <tt id="link-50" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-50', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-51" class="py-name" targets="Class Bio.File.UndoHandle=Bio.File.UndoHandle-class.html"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-51', 'UndoHandle', 'link-51');">UndoHandle</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-name">uhandle</tt> <tt class="py-op">=</tt> <tt id="link-52" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-52', 'handle', 'link-35');">handle</a></tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">uhandle</tt> <tt class="py-op">=</tt> <tt id="link-53" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-53', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-54', 'UndoHandle', 'link-51');">UndoHandle</a></tt><tt class="py-op">(</tt><tt id="link-55" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-55', 'handle', 'link-35');">handle</a></tt><tt class="py-op">)</tt> </tt>
<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-comment"># Read the Entrez header information, if it exists</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt id="link-56" class="py-name" targets="Function Bio.ParserSupport.attempt_read_and_call()=Bio.ParserSupport-module.html#attempt_read_and_call"><a title="Bio.ParserSupport.attempt_read_and_call" class="py-name" href="#" onclick="return doclink('link-56', 'attempt_read_and_call', 'link-56');">attempt_read_and_call</a></tt><tt class="py-op">(</tt><tt class="py-name">uhandle</tt><tt class="py-op">,</tt> <tt class="py-name">consumer</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name" targets="Method Bio.AlignAce.Parser.AlignAceConsumer.noevent()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#noevent,Method Bio.Blast.NCBIStandalone._BlastErrorConsumer.noevent()=Bio.Blast.NCBIStandalone._BlastErrorConsumer-class.html#noevent,Method Bio.MEME.Parser._MASTConsumer.noevent()=Bio.MEME.Parser._MASTConsumer-class.html#noevent,Method Bio.MEME.Parser._MEMEConsumer.noevent()=Bio.MEME.Parser._MEMEConsumer-class.html#noevent"><a title="Bio.AlignAce.Parser.AlignAceConsumer.noevent
Bio.Blast.NCBIStandalone._BlastErrorConsumer.noevent
Bio.MEME.Parser._MASTConsumer.noevent
Bio.MEME.Parser._MEMEConsumer.noevent" class="py-name" href="#" onclick="return doclink('link-57', 'noevent', 'link-57');">noevent</a></tt><tt class="py-op">,</tt> <tt id="link-58" class="py-name" targets="Method Bio.GFF.easy.Location.start()=Bio.GFF.easy.Location-class.html#start,Method Bio.Prosite.Pattern.PrositeMatch.start()=Bio.Prosite.Pattern.PrositeMatch-class.html#start,Variable Bio.Restriction._Update.RestrictionCompiler.start=Bio.Restriction._Update.RestrictionCompiler-module.html#start,Method Martel.LAX.LAX.start()=Martel.LAX.LAX-class.html#start"><a title="Bio.GFF.easy.Location.start
Bio.Prosite.Pattern.PrositeMatch.start
Bio.Restriction._Update.RestrictionCompiler.start
Martel.LAX.LAX.start" class="py-name" href="#" onclick="return doclink('link-58', 'start', 'link-58');">start</a></tt><tt class="py-op">=</tt><tt class="py-string">'Entrez'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt id="link-59" class="py-name" targets="Function Bio.ParserSupport.read_and_call()=Bio.ParserSupport-module.html#read_and_call"><a title="Bio.ParserSupport.read_and_call" class="py-name" href="#" onclick="return doclink('link-59', 'read_and_call', 'link-59');">read_and_call</a></tt><tt class="py-op">(</tt><tt class="py-name">uhandle</tt><tt class="py-op">,</tt> <tt class="py-name">consumer</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.noevent
Bio.Blast.NCBIStandalone._BlastErrorConsumer.noevent
Bio.MEME.Parser._MASTConsumer.noevent
Bio.MEME.Parser._MEMEConsumer.noevent" class="py-name" href="#" onclick="return doclink('link-60', 'noevent', 'link-57');">noevent</a></tt><tt class="py-op">,</tt> <tt id="link-61" class="py-name"><a title="Bio.GFF.easy.Location.start
Bio.Prosite.Pattern.PrositeMatch.start
Bio.Restriction._Update.RestrictionCompiler.start
Martel.LAX.LAX.start" class="py-name" href="#" onclick="return doclink('link-61', 'start', 'link-58');">start</a></tt><tt class="py-op">=</tt><tt class="py-string">'----------------'</tt><tt class="py-op">)</tt> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name" targets="Method Bio.Compass._Scanner._scan_record()=Bio.Compass._Scanner-class.html#_scan_record,Method Bio.Enzyme._Scanner._scan_record()=Bio.Enzyme._Scanner-class.html#_scan_record,Method Bio.Gobase._Scanner._scan_record()=Bio.Gobase._Scanner-class.html#_scan_record,Method Bio.Medline._Scanner._scan_record()=Bio.Medline._Scanner-class.html#_scan_record,Method Bio.Prosite.Prodoc._Scanner._scan_record()=Bio.Prosite.Prodoc._Scanner-class.html#_scan_record,Method Bio.Prosite._Scanner._scan_record()=Bio.Prosite._Scanner-class.html#_scan_record,Method Bio.Rebase._Scanner._scan_record()=Bio.Rebase._Scanner-class.html#_scan_record,Method Bio.Sequencing.Ace._Scanner._scan_record()=Bio.Sequencing.Ace._Scanner-class.html#_scan_record,Method Bio.Sequencing.Phd._Scanner._scan_record()=Bio.Sequencing.Phd._Scanner-class.html#_scan_record,Method Bio.SwissProt.SProt._Scanner._scan_record()=Bio.SwissProt.SProt._Scanner-class.html#_scan_record"><a title="Bio.Compass._Scanner._scan_record
Bio.Enzyme._Scanner._scan_record
Bio.Gobase._Scanner._scan_record
Bio.Medline._Scanner._scan_record
Bio.Prosite.Prodoc._Scanner._scan_record
Bio.Prosite._Scanner._scan_record
Bio.Rebase._Scanner._scan_record
Bio.Sequencing.Ace._Scanner._scan_record
Bio.Sequencing.Phd._Scanner._scan_record
Bio.SwissProt.SProt._Scanner._scan_record" class="py-name" href="#" onclick="return doclink('link-62', '_scan_record', 'link-62');">_scan_record</a></tt><tt class="py-op">(</tt><tt class="py-name">uhandle</tt><tt class="py-op">,</tt> <tt class="py-name">consumer</tt><tt class="py-op">)</tt> </tt>
</div><a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> </tt>
<a name="_Scanner._scan_record"></a><div id="_Scanner._scan_record-def"><a name="L262"></a><tt class="py-lineno">262</tt> <a class="py-toggle" href="#" id="_Scanner._scan_record-toggle" onclick="return toggle('_Scanner._scan_record');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._Scanner-class.html#_scan_record">_scan_record</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">uhandle</tt><tt class="py-op">,</tt> <tt class="py-param">consumer</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_Scanner._scan_record-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_Scanner._scan_record-expanded"><a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-name">consumer</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name" targets="Method Bio.Medline._RecordConsumer.start_record()=Bio.Medline._RecordConsumer-class.html#start_record,Method Bio.PopGen.FDist._RecordConsumer.start_record()=Bio.PopGen.FDist._RecordConsumer-class.html#start_record,Method Bio.PopGen.GenePop._RecordConsumer.start_record()=Bio.PopGen.GenePop._RecordConsumer-class.html#start_record,Method Bio.Prosite.Prodoc._RecordConsumer.start_record()=Bio.Prosite.Prodoc._RecordConsumer-class.html#start_record,Method Bio.Prosite._RecordConsumer.start_record()=Bio.Prosite._RecordConsumer-class.html#start_record,Method Bio.SwissProt.SProt._RecordConsumer.start_record()=Bio.SwissProt.SProt._RecordConsumer-class.html#start_record,Method Bio.SwissProt.SProt._SequenceConsumer.start_record()=Bio.SwissProt.SProt._SequenceConsumer-class.html#start_record,Method Bio.builders.SeqRecord.sequence.BuildSeqRecord.start_record()=Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#start_record"><a title="Bio.Medline._RecordConsumer.start_record
Bio.PopGen.FDist._RecordConsumer.start_record
Bio.PopGen.GenePop._RecordConsumer.start_record
Bio.Prosite.Prodoc._RecordConsumer.start_record
Bio.Prosite._RecordConsumer.start_record
Bio.SwissProt.SProt._RecordConsumer.start_record
Bio.SwissProt.SProt._SequenceConsumer.start_record
Bio.builders.SeqRecord.sequence.BuildSeqRecord.start_record" class="py-name" href="#" onclick="return doclink('link-63', 'start_record', 'link-63');">start_record</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-name">prev_qualifier</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">uhandle</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name" targets="Method Bio.EUtils.ReseekFile.ReseekFile.readline()=Bio.EUtils.ReseekFile.ReseekFile-class.html#readline,Method Bio.File.SGMLHandle.readline()=Bio.File.SGMLHandle-class.html#readline,Method Bio.File.UndoHandle.readline()=Bio.File.UndoHandle-class.html#readline,Method Bio.SGMLExtractor.SGMLExtractorHandle.readline()=Bio.SGMLExtractor.SGMLExtractorHandle-class.html#readline"><a title="Bio.EUtils.ReseekFile.ReseekFile.readline
Bio.File.SGMLHandle.readline
Bio.File.UndoHandle.readline
Bio.SGMLExtractor.SGMLExtractorHandle.readline" class="py-name" href="#" onclick="return doclink('link-64', 'readline', 'link-64');">readline</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-65" class="py-name" targets="Function Bio.ParserSupport.is_blank_line()=Bio.ParserSupport-module.html#is_blank_line"><a title="Bio.ParserSupport.is_blank_line" class="py-name" href="#" onclick="return doclink('link-65', 'is_blank_line', 'link-65');">is_blank_line</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-comment"># There are 2 possible formats for a line:</tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># TI - Epidemiology of mycobacterial resistance (especially Mycoba</tt> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># tuberculosis).</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># 1) qualifier + '-' + data</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># 2) continuation, with just data</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-comment"># Check to see if it's a continuation line.</tt> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-66" class="py-name" targets="Variable Bio.expressions.genbank.qualifier=Bio.expressions.genbank-module.html#qualifier"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-66', 'qualifier', 'link-66');">qualifier</a></tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">4</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">rstrip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-comment"># There's a bug in some MH lines where the "isolation &</tt> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># purification" subheading gets split across lines and</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># purification at the beginning of the line, with only 1</tt> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># space.</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'\t'</tt> <tt class="py-keyword">or</tt> <tt id="link-67" class="py-name"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-67', 'qualifier', 'link-66');">qualifier</a></tt> <tt class="py-op">==</tt> <tt class="py-string">''</tt> <tt class="py-keyword">or</tt> \ </tt>
<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">13</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">' purification'</tt><tt class="py-op">:</tt> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">prev_qualifier</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-string">"Continuation on first line\n%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">line</tt> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt id="link-68" class="py-name"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-68', 'qualifier', 'link-66');">qualifier</a></tt> <tt class="py-op">=</tt> <tt class="py-name">prev_qualifier</tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt class="py-comment"># Make sure it contains a '-'</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> <tt class="py-op"><</tt> <tt class="py-number">5</tt> <tt class="py-keyword">or</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> <tt class="py-op">!=</tt> <tt class="py-string">'-'</tt><tt class="py-op">:</tt> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> \ </tt>
<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-string">"I don't understand the format of line %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">line</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-name">prev_qualifier</tt> <tt class="py-op">=</tt> <tt id="link-69" class="py-name"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-69', 'qualifier', 'link-66');">qualifier</a></tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-name">fn</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">consumer</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="Bio.Medline._Scanner._categories" class="py-name" href="#" onclick="return doclink('link-70', '_categories', 'link-48');">_categories</a></tt><tt class="py-op">[</tt><tt id="link-71" class="py-name"><a title="Bio.expressions.genbank.qualifier" class="py-name" href="#" onclick="return doclink('link-71', 'qualifier', 'link-66');">qualifier</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-comment"># call an 'undefined' function for </tt> </tt>
<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">consumer</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="Bio.Medline._RecordConsumer.undefined" class="py-name" href="#" onclick="return doclink('link-72', 'undefined', 'link-34');">undefined</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-name">fn</tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-name">consumer</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name" targets="Method Bio.Emboss.Primer._Primer3RecordConsumer.end_record()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#end_record,Method Bio.Emboss.Primer._PrimerSearchRecordConsumer.end_record()=Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#end_record,Method Bio.Medline._RecordConsumer.end_record()=Bio.Medline._RecordConsumer-class.html#end_record,Method Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder.end_record()=Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder-class.html#end_record,Method Bio.PopGen.FDist._RecordConsumer.end_record()=Bio.PopGen.FDist._RecordConsumer-class.html#end_record,Method Bio.PopGen.GenePop._RecordConsumer.end_record()=Bio.PopGen.GenePop._RecordConsumer-class.html#end_record,Method Bio.Prosite.Prodoc._RecordConsumer.end_record()=Bio.Prosite.Prodoc._RecordConsumer-class.html#end_record,Method Bio.Prosite._RecordConsumer.end_record()=Bio.Prosite._RecordConsumer-class.html#end_record,Method Bio.SwissProt.SProt._RecordConsumer.end_record()=Bio.SwissProt.SProt._RecordConsumer-class.html#end_record,Method Bio.SwissProt.SProt._SequenceConsumer.end_record()=Bio.SwissProt.SProt._SequenceConsumer-class.html#end_record,Method Bio.builders.SeqRecord.sequence.BuildSeqRecord.end_record()=Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#end_record"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.end_record
Bio.Emboss.Primer._PrimerSearchRecordConsumer.end_record
Bio.Medline._RecordConsumer.end_record
Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder.end_record
Bio.PopGen.FDist._RecordConsumer.end_record
Bio.PopGen.GenePop._RecordConsumer.end_record
Bio.Prosite.Prodoc._RecordConsumer.end_record
Bio.Prosite._RecordConsumer.end_record
Bio.SwissProt.SProt._RecordConsumer.end_record
Bio.SwissProt.SProt._SequenceConsumer.end_record
Bio.builders.SeqRecord.sequence.BuildSeqRecord.end_record" class="py-name" href="#" onclick="return doclink('link-73', 'end_record', 'link-73');">end_record</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer"></a><div id="_RecordConsumer-def"><a name="L305"></a><tt class="py-lineno">305</tt> <a class="py-toggle" href="#" id="_RecordConsumer-toggle" onclick="return toggle('_RecordConsumer');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html">_RecordConsumer</a><tt class="py-op">(</tt><tt class="py-base-class">AbstractConsumer</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_RecordConsumer-expanded"><a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt class="py-docstring">"""Consumer that converts a Medline record to a Record object.</tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"><tt class="py-docstring"> Members:</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"><tt class="py-docstring"> data Record with Medline data.</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="_RecordConsumer.__init__"></a><div id="_RecordConsumer.__init__-def"><a name="L312"></a><tt class="py-lineno">312</tt> <a class="py-toggle" href="#" id="_RecordConsumer.__init__-toggle" onclick="return toggle('_RecordConsumer.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.__init__-expanded"><a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-74', 'data', 'link-39');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
</div><a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.start_record"></a><div id="_RecordConsumer.start_record-def"><a name="L315"></a><tt class="py-lineno">315</tt> <a class="py-toggle" href="#" id="_RecordConsumer.start_record-toggle" onclick="return toggle('_RecordConsumer.start_record');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#start_record">start_record</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.start_record-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.start_record-expanded"><a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-75', 'data', 'link-39');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-76" class="py-name" targets="Module Bio.Blast.Record=Bio.Blast.Record-module.html,Module Bio.CDD.Record=Bio.CDD.Record-module.html,Class Bio.CDD.Record.Record=Bio.CDD.Record.Record-class.html,Class Bio.Cluster.Record=Bio.Cluster.Record-class.html,Class Bio.Compass.Record=Bio.Compass.Record-class.html,Module Bio.ECell.Record=Bio.ECell.Record-module.html,Class Bio.ECell.Record.Record=Bio.ECell.Record.Record-class.html,Class Bio.Fasta.Record=Bio.Fasta.Record-class.html,Module Bio.GenBank.Record=Bio.GenBank.Record-module.html,Class Bio.GenBank.Record.Record=Bio.GenBank.Record.Record-class.html,Module Bio.Geo.Record=Bio.Geo.Record-module.html,Class Bio.Geo.Record.Record=Bio.Geo.Record.Record-class.html,Class Bio.Gobase.Record=Bio.Gobase.Record-class.html,Module Bio.IntelliGenetics.Record=Bio.IntelliGenetics.Record-module.html,Class Bio.IntelliGenetics.Record.Record=Bio.IntelliGenetics.Record.Record-class.html,Class Bio.InterPro.Record=Bio.InterPro.Record-class.html,Class Bio.KEGG.Compound.Record=Bio.KEGG.Compound.Record-class.html,Class Bio.KEGG.Enzyme.Record=Bio.KEGG.Enzyme.Record-class.html,Class Bio.LocusLink.Record=Bio.LocusLink.Record-class.html,Class Bio.LocusLink.web_parse.Record=Bio.LocusLink.web_parse.Record-class.html,Class Bio.Medline.Record=Bio.Medline.Record-class.html,Module Bio.MetaTool.Record=Bio.MetaTool.Record-module.html,Class Bio.MetaTool.Record.Record=Bio.MetaTool.Record.Record-class.html,Module Bio.NBRF.Record=Bio.NBRF.Record-module.html,Class Bio.NBRF.Record.Record=Bio.NBRF.Record.Record-class.html,Class Bio.Ndb.Record=Bio.Ndb.Record-class.html,Class Bio.PopGen.FDist.Record=Bio.PopGen.FDist.Record-class.html,Class Bio.PopGen.GenePop.Record=Bio.PopGen.GenePop.Record-class.html,Class Bio.Prosite.Prodoc.Record=Bio.Prosite.Prodoc.Record-class.html,Class Bio.Prosite.Record=Bio.Prosite.Record-class.html,Class Bio.Rebase.Record=Bio.Rebase.Record-class.html,Class Bio.SCOP.Cla.Record=Bio.SCOP.Cla.Record-class.html,Class Bio.SCOP.Des.Record=Bio.SCOP.Des.Record-class.html,Class Bio.SCOP.Dom.Record=Bio.SCOP.Dom.Record-class.html,Class Bio.SCOP.Hie.Record=Bio.SCOP.Hie.Record-class.html,Module Bio.Saf.Record=Bio.Saf.Record-module.html,Class Bio.Saf.Record.Record=Bio.Saf.Record.Record-class.html,Class Bio.Sequencing.Phd.Record=Bio.Sequencing.Phd.Record-class.html,Class Bio.SwissProt.KeyWList.Record=Bio.SwissProt.KeyWList.Record-class.html,Class Bio.SwissProt.SProt.Record=Bio.SwissProt.SProt.Record-class.html"><a title="Bio.Blast.Record
Bio.CDD.Record
Bio.CDD.Record.Record
Bio.Cluster.Record
Bio.Compass.Record
Bio.ECell.Record
Bio.ECell.Record.Record
Bio.Fasta.Record
Bio.GenBank.Record
Bio.GenBank.Record.Record
Bio.Geo.Record
Bio.Geo.Record.Record
Bio.Gobase.Record
Bio.IntelliGenetics.Record
Bio.IntelliGenetics.Record.Record
Bio.InterPro.Record
Bio.KEGG.Compound.Record
Bio.KEGG.Enzyme.Record
Bio.LocusLink.Record
Bio.LocusLink.web_parse.Record
Bio.Medline.Record
Bio.MetaTool.Record
Bio.MetaTool.Record.Record
Bio.NBRF.Record
Bio.NBRF.Record.Record
Bio.Ndb.Record
Bio.PopGen.FDist.Record
Bio.PopGen.GenePop.Record
Bio.Prosite.Prodoc.Record
Bio.Prosite.Record
Bio.Rebase.Record
Bio.SCOP.Cla.Record
Bio.SCOP.Des.Record
Bio.SCOP.Dom.Record
Bio.SCOP.Hie.Record
Bio.Saf.Record
Bio.Saf.Record.Record
Bio.Sequencing.Phd.Record
Bio.SwissProt.KeyWList.Record
Bio.SwissProt.SProt.Record" class="py-name" href="#" onclick="return doclink('link-76', 'Record', 'link-76');">Record</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.end_record"></a><div id="_RecordConsumer.end_record-def"><a name="L318"></a><tt class="py-lineno">318</tt> <a class="py-toggle" href="#" id="_RecordConsumer.end_record-toggle" onclick="return toggle('_RecordConsumer.end_record');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#end_record">end_record</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.end_record-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.end_record-expanded"><a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name" targets="Method Bio.Medline._RecordConsumer._clean_record()=Bio.Medline._RecordConsumer-class.html#_clean_record,Method Bio.SwissProt.SProt._RecordConsumer._clean_record()=Bio.SwissProt.SProt._RecordConsumer-class.html#_clean_record"><a title="Bio.Medline._RecordConsumer._clean_record
Bio.SwissProt.SProt._RecordConsumer._clean_record" class="py-name" href="#" onclick="return doclink('link-77', '_clean_record', 'link-77');">_clean_record</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-78', 'data', 'link-39');">data</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.abstract_author"></a><div id="_RecordConsumer.abstract_author-def"><a name="L321"></a><tt class="py-lineno">321</tt> <a class="py-toggle" href="#" id="_RecordConsumer.abstract_author-toggle" onclick="return toggle('_RecordConsumer.abstract_author');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#abstract_author">abstract_author</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.abstract_author-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.abstract_author-expanded"><a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-79', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="Bio.Medline._RecordConsumer.abstract_author" class="py-name" href="#" onclick="return doclink('link-80', 'abstract_author', 'link-8');">abstract_author</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name" targets="Method Bio.Medline._RecordConsumer._clean()=Bio.Medline._RecordConsumer-class.html#_clean,Method Bio.Prosite._RecordConsumer._clean()=Bio.Prosite._RecordConsumer-class.html#_clean"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-81', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.abstract"></a><div id="_RecordConsumer.abstract-def"><a name="L324"></a><tt class="py-lineno">324</tt> <a class="py-toggle" href="#" id="_RecordConsumer.abstract-toggle" onclick="return toggle('_RecordConsumer.abstract');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#abstract">abstract</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.abstract-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.abstract-expanded"><a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-82', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="Bio.Medline._RecordConsumer.abstract" class="py-name" href="#" onclick="return doclink('link-83', 'abstract', 'link-6');">abstract</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-84', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="Bio.Medline._RecordConsumer.abstract" class="py-name" href="#" onclick="return doclink('link-85', 'abstract', 'link-6');">abstract</a></tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-86', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">,</tt> <tt class="py-name">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.address"></a><div id="_RecordConsumer.address-def"><a name="L327"></a><tt class="py-lineno">327</tt> <a class="py-toggle" href="#" id="_RecordConsumer.address-toggle" onclick="return toggle('_RecordConsumer.address');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#address">address</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.address-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.address-expanded"><a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-87', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="Bio.Medline._RecordConsumer.address" class="py-name" href="#" onclick="return doclink('link-88', 'address', 'link-14');">address</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-89', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Bio.Medline._RecordConsumer.address" class="py-name" href="#" onclick="return doclink('link-90', 'address', 'link-14');">address</a></tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-91', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">,</tt> <tt class="py-name">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.author"></a><div id="_RecordConsumer.author-def"><a name="L330"></a><tt class="py-lineno">330</tt> <a class="py-toggle" href="#" id="_RecordConsumer.author-toggle" onclick="return toggle('_RecordConsumer.author');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#author">author</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.author-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.author-expanded"><a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-92', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="Bio.GenBank._FeatureConsumer.authors
Bio.GenBank._RecordConsumer.authors" class="py-name" href="#" onclick="return doclink('link-93', 'authors', 'link-12');">authors</a></tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-94', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-95', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.call_number"></a><div id="_RecordConsumer.call_number-def"><a name="L333"></a><tt class="py-lineno">333</tt> <a class="py-toggle" href="#" id="_RecordConsumer.call_number-toggle" onclick="return toggle('_RecordConsumer.call_number');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#call_number">call_number</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.call_number-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.call_number-expanded"><a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-96', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="Bio.Medline._RecordConsumer.call_number" class="py-name" href="#" onclick="return doclink('link-97', 'call_number', 'link-21');">call_number</a></tt><tt class="py-op">,</tt> <tt class="py-string">"call numbers already defined"</tt> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-98', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-99" class="py-name"><a title="Bio.Medline._RecordConsumer.call_number" class="py-name" href="#" onclick="return doclink('link-99', 'call_number', 'link-21');">call_number</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-100', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.comments"></a><div id="_RecordConsumer.comments-def"><a name="L337"></a><tt class="py-lineno">337</tt> <a class="py-toggle" href="#" id="_RecordConsumer.comments-toggle" onclick="return toggle('_RecordConsumer.comments');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#comments">comments</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.comments-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.comments-expanded"><a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-101', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.comments
Bio.Emboss.primer3_format.comments
Bio.Medline._RecordConsumer.comments" class="py-name" href="#" onclick="return doclink('link-102', 'comments', 'link-7');">comments</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-103', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-104', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.class_update_date"></a><div id="_RecordConsumer.class_update_date-def"><a name="L340"></a><tt class="py-lineno">340</tt> <a class="py-toggle" href="#" id="_RecordConsumer.class_update_date-toggle" onclick="return toggle('_RecordConsumer.class_update_date');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#class_update_date">class_update_date</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.class_update_date-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.class_update_date-expanded"><a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-105', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-106" class="py-name"><a title="Bio.Medline._RecordConsumer.class_update_date" class="py-name" href="#" onclick="return doclink('link-106', 'class_update_date', 'link-31');">class_update_date</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> <tt class="py-string">"class update date already defined"</tt> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-107', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="Bio.Medline._RecordConsumer.class_update_date" class="py-name" href="#" onclick="return doclink('link-108', 'class_update_date', 'link-31');">class_update_date</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-109" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-109', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.country"></a><div id="_RecordConsumer.country-def"><a name="L345"></a><tt class="py-lineno">345</tt> <a class="py-toggle" href="#" id="_RecordConsumer.country-toggle" onclick="return toggle('_RecordConsumer.country');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#country">country</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.country-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.country-expanded"><a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-110', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-111" class="py-name"><a title="Bio.Medline._RecordConsumer.country" class="py-name" href="#" onclick="return doclink('link-111', 'country', 'link-18');">country</a></tt><tt class="py-op">,</tt> <tt class="py-string">"country already defined"</tt> </tt>
<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-112" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-112', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-113" class="py-name"><a title="Bio.Medline._RecordConsumer.country" class="py-name" href="#" onclick="return doclink('link-113', 'country', 'link-18');">country</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-114', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.entry_date"></a><div id="_RecordConsumer.entry_date-def"><a name="L349"></a><tt class="py-lineno">349</tt> <a class="py-toggle" href="#" id="_RecordConsumer.entry_date-toggle" onclick="return toggle('_RecordConsumer.entry_date');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#entry_date">entry_date</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.entry_date-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.entry_date-expanded"><a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-115" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-115', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Bio.Medline._RecordConsumer.entry_date" class="py-name" href="#" onclick="return doclink('link-116', 'entry_date', 'link-29');">entry_date</a></tt><tt class="py-op">,</tt> <tt class="py-string">"entry date already defined"</tt> </tt>
<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-117" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-117', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-118" class="py-name"><a title="Bio.Medline._RecordConsumer.entry_date" class="py-name" href="#" onclick="return doclink('link-118', 'entry_date', 'link-29');">entry_date</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-119" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-119', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.publication_date"></a><div id="_RecordConsumer.publication_date-def"><a name="L353"></a><tt class="py-lineno">353</tt> <a class="py-toggle" href="#" id="_RecordConsumer.publication_date-toggle" onclick="return toggle('_RecordConsumer.publication_date');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#publication_date">publication_date</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.publication_date-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.publication_date-expanded"><a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-120', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-121" class="py-name"><a title="Bio.Medline._RecordConsumer.publication_date" class="py-name" href="#" onclick="return doclink('link-121', 'publication_date', 'link-24');">publication_date</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt class="py-string">"publication date already defined"</tt> </tt>
<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-122" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-122', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="Bio.Medline._RecordConsumer.publication_date" class="py-name" href="#" onclick="return doclink('link-123', 'publication_date', 'link-24');">publication_date</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-124', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.english_abstract"></a><div id="_RecordConsumer.english_abstract-def"><a name="L358"></a><tt class="py-lineno">358</tt> <a class="py-toggle" href="#" id="_RecordConsumer.english_abstract-toggle" onclick="return toggle('_RecordConsumer.english_abstract');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#english_abstract">english_abstract</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.english_abstract-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.english_abstract-expanded"><a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-125" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-125', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-126" class="py-name"><a title="Bio.Medline._RecordConsumer.english_abstract" class="py-name" href="#" onclick="return doclink('link-126', 'english_abstract', 'link-9');">english_abstract</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"> <tt class="py-string">"english abstract already defined"</tt> </tt>
<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-127" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-127', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-128" class="py-name"><a title="Bio.Medline._RecordConsumer.english_abstract" class="py-name" href="#" onclick="return doclink('link-128', 'english_abstract', 'link-9');">english_abstract</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-129" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-129', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.entry_month"></a><div id="_RecordConsumer.entry_month-def"><a name="L363"></a><tt class="py-lineno">363</tt> <a class="py-toggle" href="#" id="_RecordConsumer.entry_month-toggle" onclick="return toggle('_RecordConsumer.entry_month');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#entry_month">entry_month</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.entry_month-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.entry_month-expanded"><a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-130', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-131" class="py-name"><a title="Bio.Medline._RecordConsumer.entry_month" class="py-name" href="#" onclick="return doclink('link-131', 'entry_month', 'link-30');">entry_month</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-string">"entry month already defined"</tt> </tt>
<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-132" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-132', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-133" class="py-name"><a title="Bio.Medline._RecordConsumer.entry_month" class="py-name" href="#" onclick="return doclink('link-133', 'entry_month', 'link-30');">entry_month</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-134', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.gene_symbol"></a><div id="_RecordConsumer.gene_symbol-def"><a name="L368"></a><tt class="py-lineno">368</tt> <a class="py-toggle" href="#" id="_RecordConsumer.gene_symbol-toggle" onclick="return toggle('_RecordConsumer.gene_symbol');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#gene_symbol">gene_symbol</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.gene_symbol-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.gene_symbol-expanded"><a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-135" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-135', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">gene_symbols</tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-136', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-137" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-137', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.identification"></a><div id="_RecordConsumer.identification-def"><a name="L371"></a><tt class="py-lineno">371</tt> <a class="py-toggle" href="#" id="_RecordConsumer.identification-toggle" onclick="return toggle('_RecordConsumer.identification');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#identification">identification</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.identification-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.identification-expanded"><a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-138" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-138', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">identifications</tt><tt class="py-op">.</tt><tt id="link-139" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-139', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-140" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-140', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.issue_part_supplement"></a><div id="_RecordConsumer.issue_part_supplement-def"><a name="L374"></a><tt class="py-lineno">374</tt> <a class="py-toggle" href="#" id="_RecordConsumer.issue_part_supplement-toggle" onclick="return toggle('_RecordConsumer.issue_part_supplement');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#issue_part_supplement">issue_part_supplement</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.issue_part_supplement-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.issue_part_supplement-expanded"><a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-141" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-141', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-142" class="py-name"><a title="Bio.Medline._RecordConsumer.issue_part_supplement" class="py-name" href="#" onclick="return doclink('link-142', 'issue_part_supplement', 'link-22');">issue_part_supplement</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-string">"issue/part/supplement already defined"</tt> </tt>
<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-143" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-143', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="Bio.Medline._RecordConsumer.issue_part_supplement" class="py-name" href="#" onclick="return doclink('link-144', 'issue_part_supplement', 'link-22');">issue_part_supplement</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-145" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-145', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.issn"></a><div id="_RecordConsumer.issn-def"><a name="L379"></a><tt class="py-lineno">379</tt> <a class="py-toggle" href="#" id="_RecordConsumer.issn-toggle" onclick="return toggle('_RecordConsumer.issn');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#issn">issn</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.issn-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.issn-expanded"><a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-146" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-146', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-147" class="py-name"><a title="Bio.Medline._RecordConsumer.issn" class="py-name" href="#" onclick="return doclink('link-147', 'issn', 'link-17');">issn</a></tt><tt class="py-op">,</tt> <tt class="py-string">"ISSN already defined"</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-148" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-148', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-149" class="py-name"><a title="Bio.Medline._RecordConsumer.issn" class="py-name" href="#" onclick="return doclink('link-149', 'issn', 'link-17');">issn</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-150" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-150', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.journal_title_code"></a><div id="_RecordConsumer.journal_title_code-def"><a name="L383"></a><tt class="py-lineno">383</tt> <a class="py-toggle" href="#" id="_RecordConsumer.journal_title_code-toggle" onclick="return toggle('_RecordConsumer.journal_title_code');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#journal_title_code">journal_title_code</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.journal_title_code-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.journal_title_code-expanded"><a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-151" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-151', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-152" class="py-name"><a title="Bio.Medline._RecordConsumer.journal_title_code" class="py-name" href="#" onclick="return doclink('link-152', 'journal_title_code', 'link-15');">journal_title_code</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-string">"journal title code already defined"</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-153', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-154" class="py-name"><a title="Bio.Medline._RecordConsumer.journal_title_code" class="py-name" href="#" onclick="return doclink('link-154', 'journal_title_code', 'link-15');">journal_title_code</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-155', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.language"></a><div id="_RecordConsumer.language-def"><a name="L388"></a><tt class="py-lineno">388</tt> <a class="py-toggle" href="#" id="_RecordConsumer.language-toggle" onclick="return toggle('_RecordConsumer.language');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#language">language</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.language-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.language-expanded"><a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-156', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">languages</tt><tt class="py-op">.</tt><tt id="link-157" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-157', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-158" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-158', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.special_list"></a><div id="_RecordConsumer.special_list-def"><a name="L391"></a><tt class="py-lineno">391</tt> <a class="py-toggle" href="#" id="_RecordConsumer.special_list-toggle" onclick="return toggle('_RecordConsumer.special_list');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#special_list">special_list</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.special_list-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.special_list-expanded"><a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-159" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-159', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-160" class="py-name"><a title="Bio.Medline._RecordConsumer.special_list" class="py-name" href="#" onclick="return doclink('link-160', 'special_list', 'link-27');">special_list</a></tt><tt class="py-op">,</tt> <tt class="py-string">"special list already defined"</tt> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-161', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-162" class="py-name"><a title="Bio.Medline._RecordConsumer.special_list" class="py-name" href="#" onclick="return doclink('link-162', 'special_list', 'link-27');">special_list</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-163" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-163', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.last_revision_date"></a><div id="_RecordConsumer.last_revision_date-def"><a name="L395"></a><tt class="py-lineno">395</tt> <a class="py-toggle" href="#" id="_RecordConsumer.last_revision_date-toggle" onclick="return toggle('_RecordConsumer.last_revision_date');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#last_revision_date">last_revision_date</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.last_revision_date-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.last_revision_date-expanded"><a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-164" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-164', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-165" class="py-name"><a title="Bio.Medline._RecordConsumer.last_revision_date" class="py-name" href="#" onclick="return doclink('link-165', 'last_revision_date', 'link-32');">last_revision_date</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"> <tt class="py-string">"last revision date already defined"</tt> </tt>
<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-166" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-166', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-167" class="py-name"><a title="Bio.Medline._RecordConsumer.last_revision_date" class="py-name" href="#" onclick="return doclink('link-167', 'last_revision_date', 'link-32');">last_revision_date</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-168', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.mesh_heading"></a><div id="_RecordConsumer.mesh_heading-def"><a name="L400"></a><tt class="py-lineno">400</tt> <a class="py-toggle" href="#" id="_RecordConsumer.mesh_heading-toggle" onclick="return toggle('_RecordConsumer.mesh_heading');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#mesh_heading">mesh_heading</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.mesh_heading-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.mesh_heading-expanded"><a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt class="py-comment"># Check to see whether this is a new MH line, or a</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># continuation of an old one. If it's a continuation of an</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># old one, append it to the previous line.</tt> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># See PMID 12107064 for an example, found by Dan Rubin.</tt> </tt>
<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'MH'</tt><tt class="py-op">:</tt> </tt>
<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-169" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-169', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">mesh_headings</tt><tt class="py-op">.</tt><tt id="link-170" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-170', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-171" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-171', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> <tt class="py-name">prev_mh</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-172" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-172', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">mesh_headings</tt><tt class="py-op">.</tt><tt id="link-173" class="py-name" targets="Method Bio.Seq.MutableSeq.pop()=Bio.Seq.MutableSeq-class.html#pop"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-173', 'pop', 'link-173');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt class="py-name">continued_mh</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-174', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-175', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">mesh_headings</tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-176', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-string">"%s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">prev_mh</tt><tt class="py-op">,</tt> <tt class="py-name">continued_mh</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.mesh_tree_number"></a><div id="_RecordConsumer.mesh_tree_number-def"><a name="L412"></a><tt class="py-lineno">412</tt> <a class="py-toggle" href="#" id="_RecordConsumer.mesh_tree_number-toggle" onclick="return toggle('_RecordConsumer.mesh_tree_number');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#mesh_tree_number">mesh_tree_number</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.mesh_tree_number-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.mesh_tree_number-expanded"><a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-177', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">mesh_tree_numbers</tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-178', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-179" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-179', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.major_revision_date"></a><div id="_RecordConsumer.major_revision_date-def"><a name="L415"></a><tt class="py-lineno">415</tt> <a class="py-toggle" href="#" id="_RecordConsumer.major_revision_date-toggle" onclick="return toggle('_RecordConsumer.major_revision_date');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#major_revision_date">major_revision_date</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.major_revision_date-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.major_revision_date-expanded"><a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-180" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-180', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-181" class="py-name"><a title="Bio.Medline._RecordConsumer.major_revision_date" class="py-name" href="#" onclick="return doclink('link-181', 'major_revision_date', 'link-33');">major_revision_date</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> <tt class="py-string">"major revision date already defined"</tt> </tt>
<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-182" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-182', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-183" class="py-name"><a title="Bio.Medline._RecordConsumer.major_revision_date" class="py-name" href="#" onclick="return doclink('link-183', 'major_revision_date', 'link-33');">major_revision_date</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-184', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.no_author"></a><div id="_RecordConsumer.no_author-def"><a name="L420"></a><tt class="py-lineno">420</tt> <a class="py-toggle" href="#" id="_RecordConsumer.no_author-toggle" onclick="return toggle('_RecordConsumer.no_author');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#no_author">no_author</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.no_author-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.no_author-expanded"><a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-185', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-186" class="py-name"><a title="Bio.Medline._RecordConsumer.no_author" class="py-name" href="#" onclick="return doclink('link-186', 'no_author', 'link-13');">no_author</a></tt><tt class="py-op">,</tt> <tt class="py-string">"no author already defined"</tt> </tt>
<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-187" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-187', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="Bio.Medline._RecordConsumer.no_author" class="py-name" href="#" onclick="return doclink('link-188', 'no_author', 'link-13');">no_author</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-189" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-189', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.substance_name"></a><div id="_RecordConsumer.substance_name-def"><a name="L424"></a><tt class="py-lineno">424</tt> <a class="py-toggle" href="#" id="_RecordConsumer.substance_name-toggle" onclick="return toggle('_RecordConsumer.substance_name');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#substance_name">substance_name</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.substance_name-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.substance_name-expanded"><a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-190" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-190', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-191" class="py-name"><a title="Bio.Medline._RecordConsumer.substance_name" class="py-name" href="#" onclick="return doclink('link-191', 'substance_name', 'link-28');">substance_name</a></tt><tt class="py-op">,</tt> <tt class="py-string">"substance name already defined"</tt> </tt>
<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-192" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-192', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-193" class="py-name"><a title="Bio.Medline._RecordConsumer.substance_name" class="py-name" href="#" onclick="return doclink('link-193', 'substance_name', 'link-28');">substance_name</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-194" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-194', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.pagination"></a><div id="_RecordConsumer.pagination-def"><a name="L428"></a><tt class="py-lineno">428</tt> <a class="py-toggle" href="#" id="_RecordConsumer.pagination-toggle" onclick="return toggle('_RecordConsumer.pagination');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#pagination">pagination</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.pagination-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.pagination-expanded"><a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-195', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-196" class="py-name"><a title="Bio.Medline._RecordConsumer.pagination" class="py-name" href="#" onclick="return doclink('link-196', 'pagination', 'link-26');">pagination</a></tt><tt class="py-op">,</tt> <tt class="py-string">"pagination already defined"</tt> </tt>
<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-197" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-197', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-198" class="py-name"><a title="Bio.Medline._RecordConsumer.pagination" class="py-name" href="#" onclick="return doclink('link-198', 'pagination', 'link-26');">pagination</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-199', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.personal_name_as_subject"></a><div id="_RecordConsumer.personal_name_as_subject-def"><a name="L432"></a><tt class="py-lineno">432</tt> <a class="py-toggle" href="#" id="_RecordConsumer.personal_name_as_subject-toggle" onclick="return toggle('_RecordConsumer.personal_name_as_subject');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#personal_name_as_subject">personal_name_as_subject</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.personal_name_as_subject-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.personal_name_as_subject-expanded"><a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-200" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-200', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">personal_name_as_subjects</tt><tt class="py-op">.</tt><tt id="link-201" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-201', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-202" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-202', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.publication_type"></a><div id="_RecordConsumer.publication_type-def"><a name="L435"></a><tt class="py-lineno">435</tt> <a class="py-toggle" href="#" id="_RecordConsumer.publication_type-toggle" onclick="return toggle('_RecordConsumer.publication_type');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#publication_type">publication_type</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.publication_type-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.publication_type-expanded"><a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-203" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-203', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">publication_types</tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-204', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-205" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-205', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.number_of_references"></a><div id="_RecordConsumer.number_of_references-def"><a name="L438"></a><tt class="py-lineno">438</tt> <a class="py-toggle" href="#" id="_RecordConsumer.number_of_references-toggle" onclick="return toggle('_RecordConsumer.number_of_references');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#number_of_references">number_of_references</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.number_of_references-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.number_of_references-expanded"><a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-206', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-207" class="py-name"><a title="Bio.Medline._RecordConsumer.number_of_references" class="py-name" href="#" onclick="return doclink('link-207', 'number_of_references', 'link-11');">number_of_references</a></tt><tt class="py-op">,</tt> \ </tt>
<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-string">"num of references already defined"</tt> </tt>
<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-208" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-208', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-209" class="py-name"><a title="Bio.Medline._RecordConsumer.number_of_references" class="py-name" href="#" onclick="return doclink('link-209', 'number_of_references', 'link-11');">number_of_references</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-210" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-210', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.cas_registry_number"></a><div id="_RecordConsumer.cas_registry_number-def"><a name="L443"></a><tt class="py-lineno">443</tt> <a class="py-toggle" href="#" id="_RecordConsumer.cas_registry_number-toggle" onclick="return toggle('_RecordConsumer.cas_registry_number');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#cas_registry_number">cas_registry_number</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.cas_registry_number-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.cas_registry_number-expanded"><a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-211" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-211', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">registry_numbers</tt><tt class="py-op">.</tt><tt id="link-212" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-212', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-213" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-213', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.record_originator"></a><div id="_RecordConsumer.record_originator-def"><a name="L446"></a><tt class="py-lineno">446</tt> <a class="py-toggle" href="#" id="_RecordConsumer.record_originator-toggle" onclick="return toggle('_RecordConsumer.record_originator');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#record_originator">record_originator</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.record_originator-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.record_originator-expanded"><a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-214" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-214', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">record_originators</tt><tt class="py-op">.</tt><tt id="link-215" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-215', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-216" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-216', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.journal_subset"></a><div id="_RecordConsumer.journal_subset-def"><a name="L449"></a><tt class="py-lineno">449</tt> <a class="py-toggle" href="#" id="_RecordConsumer.journal_subset-toggle" onclick="return toggle('_RecordConsumer.journal_subset');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#journal_subset">journal_subset</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.journal_subset-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.journal_subset-expanded"><a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-217" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-217', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">journal_subsets</tt><tt class="py-op">.</tt><tt id="link-218" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-218', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-219" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-219', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.subheadings"></a><div id="_RecordConsumer.subheadings-def"><a name="L452"></a><tt class="py-lineno">452</tt> <a class="py-toggle" href="#" id="_RecordConsumer.subheadings-toggle" onclick="return toggle('_RecordConsumer.subheadings');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#subheadings">subheadings</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.subheadings-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.subheadings-expanded"><a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-220" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-220', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">mesh_subheadings</tt><tt class="py-op">.</tt><tt id="link-221" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-221', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-222" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-222', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.secondary_source_id"></a><div id="_RecordConsumer.secondary_source_id-def"><a name="L455"></a><tt class="py-lineno">455</tt> <a class="py-toggle" href="#" id="_RecordConsumer.secondary_source_id-toggle" onclick="return toggle('_RecordConsumer.secondary_source_id');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#secondary_source_id">secondary_source_id</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.secondary_source_id-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.secondary_source_id-expanded"><a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-223" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-223', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">secondary_source_ids</tt><tt class="py-op">.</tt><tt id="link-224" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-224', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-225" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-225', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.source"></a><div id="_RecordConsumer.source-def"><a name="L458"></a><tt class="py-lineno">458</tt> <a class="py-toggle" href="#" id="_RecordConsumer.source-toggle" onclick="return toggle('_RecordConsumer.source');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#source">source</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.source-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.source-expanded"><a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-226" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-226', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-227" class="py-name"><a title="Bio.GenBank._FeatureConsumer.source
Bio.GenBank._RecordConsumer.source
Bio.Medline._RecordConsumer.source
Bio.Pathway.Network.source
Bio.Rebase._RecordConsumer.source" class="py-name" href="#" onclick="return doclink('link-227', 'source', 'link-10');">source</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-228" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-228', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-229" class="py-name"><a title="Bio.GenBank._FeatureConsumer.source
Bio.GenBank._RecordConsumer.source
Bio.Medline._RecordConsumer.source
Bio.Pathway.Network.source
Bio.Rebase._RecordConsumer.source" class="py-name" href="#" onclick="return doclink('link-229', 'source', 'link-10');">source</a></tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-230', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">,</tt> <tt class="py-name">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.title_abbreviation"></a><div id="_RecordConsumer.title_abbreviation-def"><a name="L461"></a><tt class="py-lineno">461</tt> <a class="py-toggle" href="#" id="_RecordConsumer.title_abbreviation-toggle" onclick="return toggle('_RecordConsumer.title_abbreviation');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#title_abbreviation">title_abbreviation</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.title_abbreviation-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.title_abbreviation-expanded"><a name="L462"></a><tt class="py-lineno">462</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-231" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-231', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-232" class="py-name"><a title="Bio.Medline._RecordConsumer.title_abbreviation" class="py-name" href="#" onclick="return doclink('link-232', 'title_abbreviation', 'link-16');">title_abbreviation</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-233" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-233', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-234" class="py-name"><a title="Bio.Medline._RecordConsumer.title_abbreviation" class="py-name" href="#" onclick="return doclink('link-234', 'title_abbreviation', 'link-16');">title_abbreviation</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-235" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-235', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">,</tt> <tt class="py-name">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.title"></a><div id="_RecordConsumer.title-def"><a name="L465"></a><tt class="py-lineno">465</tt> <a class="py-toggle" href="#" id="_RecordConsumer.title-toggle" onclick="return toggle('_RecordConsumer.title');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#title">title</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.title-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.title-expanded"><a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-236" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-236', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-237" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.title
Bio.GenBank._FeatureConsumer.title
Bio.GenBank._RecordConsumer.title
Bio.Medline._RecordConsumer.title
Bio.expressions.fasta.title" class="py-name" href="#" onclick="return doclink('link-237', 'title', 'link-19');">title</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-238" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-238', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-239" class="py-name"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.title
Bio.GenBank._FeatureConsumer.title
Bio.GenBank._RecordConsumer.title
Bio.Medline._RecordConsumer.title
Bio.expressions.fasta.title" class="py-name" href="#" onclick="return doclink('link-239', 'title', 'link-19');">title</a></tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-240" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-240', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">,</tt> <tt class="py-name">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.transliterated_title"></a><div id="_RecordConsumer.transliterated_title-def"><a name="L468"></a><tt class="py-lineno">468</tt> <a class="py-toggle" href="#" id="_RecordConsumer.transliterated_title-toggle" onclick="return toggle('_RecordConsumer.transliterated_title');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#transliterated_title">transliterated_title</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.transliterated_title-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.transliterated_title-expanded"><a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-241" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-241', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="Bio.Medline._RecordConsumer.transliterated_title" class="py-name" href="#" onclick="return doclink('link-242', 'transliterated_title', 'link-20');">transliterated_title</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-243" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-243', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-244" class="py-name"><a title="Bio.Medline._RecordConsumer.transliterated_title" class="py-name" href="#" onclick="return doclink('link-244', 'transliterated_title', 'link-20');">transliterated_title</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-245" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-245', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">,</tt> <tt class="py-name">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.unique_identifier"></a><div id="_RecordConsumer.unique_identifier-def"><a name="L472"></a><tt class="py-lineno">472</tt> <a class="py-toggle" href="#" id="_RecordConsumer.unique_identifier-toggle" onclick="return toggle('_RecordConsumer.unique_identifier');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#unique_identifier">unique_identifier</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.unique_identifier-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.unique_identifier-expanded"><a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-246" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-246', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-247" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-247', 'id', 'link-4');">id</a></tt><tt class="py-op">,</tt> <tt class="py-string">"id already defined"</tt> </tt>
<a name="L474"></a><tt class="py-lineno">474</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-248" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-248', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-249" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-249', 'id', 'link-4');">id</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-250" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-250', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.volume_issue"></a><div id="_RecordConsumer.volume_issue-def"><a name="L476"></a><tt class="py-lineno">476</tt> <a class="py-toggle" href="#" id="_RecordConsumer.volume_issue-toggle" onclick="return toggle('_RecordConsumer.volume_issue');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#volume_issue">volume_issue</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.volume_issue-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.volume_issue-expanded"><a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-251" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-251', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-252" class="py-name"><a title="Bio.Medline._RecordConsumer.volume_issue" class="py-name" href="#" onclick="return doclink('link-252', 'volume_issue', 'link-23');">volume_issue</a></tt><tt class="py-op">,</tt> <tt class="py-string">"volume issue already defined"</tt> </tt>
<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-253" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-253', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-254" class="py-name"><a title="Bio.Medline._RecordConsumer.volume_issue" class="py-name" href="#" onclick="return doclink('link-254', 'volume_issue', 'link-23');">volume_issue</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-255" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-255', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.year"></a><div id="_RecordConsumer.year-def"><a name="L480"></a><tt class="py-lineno">480</tt> <a class="py-toggle" href="#" id="_RecordConsumer.year-toggle" onclick="return toggle('_RecordConsumer.year');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#year">year</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.year-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.year-expanded"><a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-256" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-256', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-257" class="py-name"><a title="Bio.Medline._RecordConsumer.year" class="py-name" href="#" onclick="return doclink('link-257', 'year', 'link-25');">year</a></tt><tt class="py-op">,</tt> <tt class="py-string">"year already defined"</tt> </tt>
<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-258" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-258', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-259" class="py-name"><a title="Bio.Medline._RecordConsumer.year" class="py-name" href="#" onclick="return doclink('link-259', 'year', 'link-25');">year</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-260" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-260', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.pubmed_id"></a><div id="_RecordConsumer.pubmed_id-def"><a name="L484"></a><tt class="py-lineno">484</tt> <a class="py-toggle" href="#" id="_RecordConsumer.pubmed_id-toggle" onclick="return toggle('_RecordConsumer.pubmed_id');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#pubmed_id">pubmed_id</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.pubmed_id-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.pubmed_id-expanded"><a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-261" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-261', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-262" class="py-name"><a title="Bio.GenBank._FeatureConsumer.pubmed_id
Bio.GenBank._RecordConsumer.pubmed_id
Bio.Medline._RecordConsumer.pubmed_id" class="py-name" href="#" onclick="return doclink('link-262', 'pubmed_id', 'link-5');">pubmed_id</a></tt><tt class="py-op">,</tt> <tt class="py-string">"PMID already defined"</tt> </tt>
<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-263" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-263', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-264" class="py-name"><a title="Bio.GenBank._FeatureConsumer.pubmed_id
Bio.GenBank._RecordConsumer.pubmed_id
Bio.Medline._RecordConsumer.pubmed_id" class="py-name" href="#" onclick="return doclink('link-264', 'pubmed_id', 'link-5');">pubmed_id</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-265" class="py-name"><a title="Bio.Medline._RecordConsumer._clean
Bio.Prosite._RecordConsumer._clean" class="py-name" href="#" onclick="return doclink('link-265', '_clean', 'link-81');">_clean</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer.undefined"></a><div id="_RecordConsumer.undefined-def"><a name="L488"></a><tt class="py-lineno">488</tt> <a class="py-toggle" href="#" id="_RecordConsumer.undefined-toggle" onclick="return toggle('_RecordConsumer.undefined');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#undefined">undefined</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer.undefined-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer.undefined-expanded"><a name="L489"></a><tt class="py-lineno">489</tt> <tt class="py-line"> <tt class="py-comment"># Records sometimes contain lines with qualifiers that don't match</tt> </tt>
<a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># any in the standard. All these lines go into another variable.</tt> </tt>
<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># Some undefined qualifiers:</tt> </tt>
<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># 4098, 4099, 4100, 4101</tt> </tt>
<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># 634</tt> </tt>
<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># NP, PID, EDAT, MHDA</tt> </tt>
<a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-266" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-266', 'data', 'link-39');">data</a></tt><tt class="py-op">.</tt><tt id="link-267" class="py-name"><a title="Bio.Medline._RecordConsumer.undefined" class="py-name" href="#" onclick="return doclink('link-267', 'undefined', 'link-34');">undefined</a></tt><tt class="py-op">.</tt><tt id="link-268" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-268', 'append', 'link-37');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
</div><a name="L497"></a><tt class="py-lineno">497</tt> <tt class="py-line"> </tt>
<a name="_RecordConsumer._clean"></a><div id="_RecordConsumer._clean-def"><a name="L498"></a><tt class="py-lineno">498</tt> <a class="py-toggle" href="#" id="_RecordConsumer._clean-toggle" onclick="return toggle('_RecordConsumer._clean');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#_clean">_clean</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">line</tt><tt class="py-op">,</tt> <tt class="py-param">rstrip</tt><tt class="py-op">=</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer._clean-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer._clean-expanded"><a name="L499"></a><tt class="py-lineno">499</tt> <tt class="py-line"> <tt id="link-269" class="py-name" targets="Variable Bio.ECell.ecell_format.tab=Bio.ECell.ecell_format-module.html#tab,Variable Bio.MetaTool.metatool_format.tab=Bio.MetaTool.metatool_format-module.html#tab"><a title="Bio.ECell.ecell_format.tab
Bio.MetaTool.metatool_format.tab" class="py-name" href="#" onclick="return doclink('link-269', 'tab', 'link-269');">tab</a></tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt id="link-270" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.find()=Bio.EUtils.POM.ElementNode-class.html#find,Method Bio.NeuralNetwork.Gene.Motif.MotifFinder.find()=Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#find,Method Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find()=Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#find,Method Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find()=Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#find,Method Bio.biblio.Biblio.find()=Bio.biblio.Biblio-class.html#find,Function Bio.triefind.find()=Bio.triefind-module.html#find"><a title="Bio.EUtils.POM.ElementNode.find
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find
Bio.biblio.Biblio.find
Bio.triefind.find" class="py-name" href="#" onclick="return doclink('link-270', 'find', 'link-270');">find</a></tt><tt class="py-op">(</tt><tt class="py-string">'\t'</tt><tt class="py-op">)</tt> </tt>
<a name="L500"></a><tt class="py-lineno">500</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-271" class="py-name"><a title="Bio.ECell.ecell_format.tab
Bio.MetaTool.metatool_format.tab" class="py-name" href="#" onclick="return doclink('link-271', 'tab', 'link-269');">tab</a></tt> <tt class="py-op">>=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L501"></a><tt class="py-lineno">501</tt> <tt class="py-line"> <tt class="py-name">nospace</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt id="link-272" class="py-name"><a title="Bio.ECell.ecell_format.tab
Bio.MetaTool.metatool_format.tab" class="py-name" href="#" onclick="return doclink('link-272', 'tab', 'link-269');">tab</a></tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L502"></a><tt class="py-lineno">502</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">13</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">' purification'</tt><tt class="py-op">:</tt> </tt>
<a name="L503"></a><tt class="py-lineno">503</tt> <tt class="py-line"> <tt class="py-name">nospace</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L504"></a><tt class="py-lineno">504</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L505"></a><tt class="py-lineno">505</tt> <tt class="py-line"> <tt class="py-name">nospace</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">6</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L506"></a><tt class="py-lineno">506</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rstrip</tt><tt class="py-op">:</tt> </tt>
<a name="L507"></a><tt class="py-lineno">507</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">nospace</tt><tt class="py-op">.</tt><tt class="py-name">rstrip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L508"></a><tt class="py-lineno">508</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">nospace</tt> </tt>
</div><a name="L509"></a><tt class="py-lineno">509</tt> <tt class="py-line"> </tt>
<a name="L510"></a><tt class="py-lineno">510</tt> <tt class="py-line"> <tt id="link-273" class="py-name" targets="Variable Bio.Medline._RecordConsumer._needs_stripping=Bio.Medline._RecordConsumer-class.html#_needs_stripping"><a title="Bio.Medline._RecordConsumer._needs_stripping" class="py-name" href="#" onclick="return doclink('link-273', '_needs_stripping', 'link-273');">_needs_stripping</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
<a name="L511"></a><tt class="py-lineno">511</tt> <tt class="py-line"> <tt class="py-string">'abstract'</tt><tt class="py-op">,</tt> <tt class="py-string">'source'</tt><tt class="py-op">,</tt> <tt class="py-string">'address'</tt><tt class="py-op">,</tt> <tt class="py-string">'title_abbreviation'</tt><tt class="py-op">,</tt> </tt>
<a name="L512"></a><tt class="py-lineno">512</tt> <tt class="py-line"> <tt class="py-string">'title'</tt><tt class="py-op">,</tt> <tt class="py-string">'transliterated_title'</tt> </tt>
<a name="L513"></a><tt class="py-lineno">513</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="_RecordConsumer._clean_record"></a><div id="_RecordConsumer._clean_record-def"><a name="L514"></a><tt class="py-lineno">514</tt> <a class="py-toggle" href="#" id="_RecordConsumer._clean_record-toggle" onclick="return toggle('_RecordConsumer._clean_record');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Medline._RecordConsumer-class.html#_clean_record">_clean_record</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">rec</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_RecordConsumer._clean_record-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="_RecordConsumer._clean_record-expanded"><a name="L515"></a><tt class="py-lineno">515</tt> <tt class="py-line"> <tt class="py-comment"># Remove trailing newlines</tt> </tt>
<a name="L516"></a><tt class="py-lineno">516</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt class="py-name">m</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-274" class="py-name"><a title="Bio.Medline._RecordConsumer._needs_stripping" class="py-name" href="#" onclick="return doclink('link-274', '_needs_stripping', 'link-273');">_needs_stripping</a></tt><tt class="py-op">:</tt> </tt>
<a name="L517"></a><tt class="py-lineno">517</tt> <tt class="py-line"> <tt id="link-275" class="py-name" targets="Variable Bio.Translate.value=Bio.Translate-module.html#value"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-275', 'value', 'link-275');">value</a></tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">rec</tt><tt class="py-op">,</tt> <tt class="py-name">m</tt><tt class="py-op">)</tt> </tt>
<a name="L518"></a><tt class="py-lineno">518</tt> <tt class="py-line"> <tt class="py-name">setattr</tt><tt class="py-op">(</tt><tt class="py-name">rec</tt><tt class="py-op">,</tt> <tt class="py-name">m</tt><tt class="py-op">,</tt> <tt id="link-276" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-276', 'value', 'link-275');">value</a></tt><tt class="py-op">.</tt><tt class="py-name">rstrip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L519"></a><tt class="py-lineno">519</tt> <tt class="py-line"> </tt><script type="text/javascript">
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