<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.MEME.Parser._MEMEConsumer</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.MEME-module.html">Package MEME</a> :: <a href="Bio.MEME.Parser-module.html">Module Parser</a> :: Class _MEMEConsumer </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.MEME.Parser._MEMEConsumer-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class _MEMEConsumer</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer">source code</a></span></p> <p>Consumer that can receive events from MEME Scanner.</p> <p>This is the Consumer object that should be passed to the MEME Scanner.</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_version"></a><span class="summary-sig-name">_version</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer._version">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_datafile"></a><span class="summary-sig-name">_datafile</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer._datafile">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_alphabet"></a><span class="summary-sig-name">_alphabet</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer._alphabet">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_sequence_name"></a><span class="summary-sig-name">_sequence_name</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer._sequence_name">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_commandline"></a><span class="summary-sig-name">_commandline</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer._commandline">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_add_motif_with_info"></a><span class="summary-sig-name">_add_motif_with_info</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer._add_motif_with_info">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="motif_name"></a><span class="summary-sig-name">motif_name</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer.motif_name">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_instance"></a><span class="summary-sig-name">add_instance</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer.add_instance">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_to_pssm"></a><span class="summary-sig-name">add_to_pssm</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer.add_to_pssm">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="add_to_logodds"></a><span class="summary-sig-name">add_to_logodds</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer.add_to_logodds">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="noevent"></a><span class="summary-sig-name">noevent</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">line</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.MEME.Parser-pysrc.html#_MEMEConsumer.noevent">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a 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