<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Bio.LocusLink.web_parse</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<span class="breadcrumbs">
<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.LocusLink-module.html">Package LocusLink</a> ::
Module web_parse
</span>
</td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="Bio.LocusLink.web_parse-pysrc.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<h1 class="epydoc">Source Code for <a href="Bio.LocusLink.web_parse-module.html">Module Bio.LocusLink.web_parse</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">sgmllib</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Module Bio.File=Bio.File-module.html"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-1', 'File', 'link-1');">File</a></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-string">The LocusLink site is:</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-string">http://www.ncbi.nlm.nih.gov/LocusLink/</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-string">Parses a Locus web page.</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">warnings</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-name">warnings</tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"Bio.LocusLink was deprecated, as NCBI's LocusLink was superceded by Entrez Gene. If you still need this module, please get in touch with the Biopython developers (biopython-dev@biopython.org) to avoid permanent removal of this module"</tt><tt class="py-op">,</tt> <tt class="py-name">DeprecationWarning</tt><tt class="py-op">)</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> </tt>
<a name="is_empty_container"></a><div id="is_empty_container-def"><a name="L14"></a><tt class="py-lineno"> 14</tt> <a class="py-toggle" href="#" id="is_empty_container-toggle" onclick="return toggle('is_empty_container');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#is_empty_container">is_empty_container</a><tt class="py-op">(</tt> <tt class="py-param">item</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="is_empty_container-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="is_empty_container-expanded"><a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> <tt class="py-name">response</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-2" class="py-name" targets="Function Bio.LocusLink.web_parse.is_container()=Bio.LocusLink.web_parse-module.html#is_container"><a title="Bio.LocusLink.web_parse.is_container" class="py-name" href="#" onclick="return doclink('link-2', 'is_container', 'link-2');">is_container</a></tt><tt class="py-op">(</tt> <tt id="link-3" class="py-name" targets="Method Bio.EUtils.Datatypes.DBIds.item()=Bio.EUtils.Datatypes.DBIds-class.html#item"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-3', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt id="link-4" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-4', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-name">response</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">response</tt> </tt>
</div><a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
<a name="is_container"></a><div id="is_container-def"><a name="L21"></a><tt class="py-lineno"> 21</tt> <a class="py-toggle" href="#" id="is_container-toggle" onclick="return toggle('is_container');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#is_container">is_container</a><tt class="py-op">(</tt> <tt class="py-param">item</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="is_container-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="is_container-expanded"><a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-name">response</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-5" class="py-name" targets="Variable Bio.GenBank.LocationParser.Integer.type=Bio.GenBank.LocationParser.Integer-class.html#type,Variable Bio.GenBank.LocationParser.Symbol.type=Bio.GenBank.LocationParser.Symbol-class.html#type,Variable Bio.GenBank.LocationParser.UnsignedInteger.type=Bio.GenBank.LocationParser.UnsignedInteger-class.html#type"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-5', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt id="link-6" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-6', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt id="link-7" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-7', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-8" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-8', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> <tt class="py-op">)</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-name">response</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">response</tt> </tt>
</div><a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> </tt>
<a name="is_substring"></a><div id="is_substring-def"><a name="L27"></a><tt class="py-lineno"> 27</tt> <a class="py-toggle" href="#" id="is_substring-toggle" onclick="return toggle('is_substring');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#is_substring">is_substring</a><tt class="py-op">(</tt> <tt class="py-param">a</tt><tt class="py-op">,</tt> <tt class="py-param">b</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="is_substring-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="is_substring-expanded"><a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">a</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.find()=Bio.EUtils.POM.ElementNode-class.html#find,Method Bio.NeuralNetwork.Gene.Motif.MotifFinder.find()=Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#find,Method Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find()=Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#find,Method Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find()=Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#find,Method Bio.biblio.Biblio.find()=Bio.biblio.Biblio-class.html#find,Function Bio.triefind.find()=Bio.triefind-module.html#find"><a title="Bio.EUtils.POM.ElementNode.find
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find
Bio.biblio.Biblio.find
Bio.triefind.find" class="py-name" href="#" onclick="return doclink('link-9', 'find', 'link-9');">find</a></tt><tt class="py-op">(</tt> <tt class="py-name">b</tt> <tt class="py-op">)</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> </tt>
<a name="print_params"></a><div id="print_params-def"><a name="L33"></a><tt class="py-lineno"> 33</tt> <a class="py-toggle" href="#" id="print_params-toggle" onclick="return toggle('print_params');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#print_params">print_params</a><tt class="py-op">(</tt> <tt class="py-param">params</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="print_params-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="print_params-expanded"><a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'%s!!!!!\n'</tt> <tt class="py-op">%</tt> <tt class="py-string">'PARAMS'</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-10" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-10', 'item', 'link-3');">item</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">params</tt><tt class="py-op">:</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'param '</tt> <tt class="py-op">+</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt> <tt id="link-11" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-11', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'-----------------'</tt> </tt>
</div><a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> </tt>
<a name="process_list"></a><div id="process_list-def"><a name="L40"></a><tt class="py-lineno"> 40</tt> <a class="py-toggle" href="#" id="process_list-toggle" onclick="return toggle('process_list');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#process_list">process_list</a><tt class="py-op">(</tt> <tt class="py-param">params</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="process_list-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="process_list-expanded"><a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">len_params</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">params</tt> <tt class="py-op">)</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">container</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt id="link-12" class="py-name" targets="Method Martel.LAX.LAX.element()=Martel.LAX.LAX-class.html#element,Method Martel.LAX.LAXAttrs.element()=Martel.LAX.LAXAttrs-class.html#element,Method Martel.LAX.LAXPositions.element()=Martel.LAX.LAXPositions-class.html#element"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-12', 'element', 'link-12');">element</a></tt> <tt class="py-op">=</tt> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Method Bio.Seq.MutableSeq.pop()=Bio.Seq.MutableSeq-class.html#pop"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-13', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-14" class="py-name" targets="Function Bio.LocusLink.web_parse.is_close_token()=Bio.LocusLink.web_parse-module.html#is_close_token"><a title="Bio.LocusLink.web_parse.is_close_token" class="py-name" href="#" onclick="return doclink('link-14', 'is_close_token', 'link-14');">is_close_token</a></tt><tt class="py-op">(</tt> <tt id="link-15" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-15', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-keyword">break</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-16" class="py-name" targets="Function Bio.LocusLink.web_parse.is_open_token()=Bio.LocusLink.web_parse-module.html#is_open_token"><a title="Bio.LocusLink.web_parse.is_open_token" class="py-name" href="#" onclick="return doclink('link-16', 'is_open_token', 'link-16');">is_open_token</a></tt><tt class="py-op">(</tt> <tt id="link-17" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-17', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-name">container</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name" targets="Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.EUtils.POM.ElementNode.append()=Bio.EUtils.POM.ElementNode-class.html#append,Method Bio.EUtils.sourcegen.SourceFile.append()=Bio.EUtils.sourcegen.SourceFile-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append,Method Martel.msre_parse.SubPattern.append()=Martel.msre_parse.SubPattern-class.html#append"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-18', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-19" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-19', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">container</tt> </tt>
</div><a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> </tt>
<a name="put"></a><div id="put-def"><a name="L55"></a><tt class="py-lineno"> 55</tt> <a class="py-toggle" href="#" id="put-toggle" onclick="return toggle('put');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#put">put</a><tt class="py-op">(</tt> <tt class="py-param">dict</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">,</tt> <tt class="py-param">val</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="put-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="put-expanded"><a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Method Bio.Crystal.Crystal.has_key()=Bio.Crystal.Crystal-class.html#has_key,Method Bio.EUtils.POM.ElementNode.has_key()=Bio.EUtils.POM.ElementNode-class.html#has_key,Method Bio.GenBank.NCBIDictionary.has_key()=Bio.GenBank.NCBIDictionary-class.html#has_key,Method Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key()=Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key,Method Bio.PDB.FragmentMapper'.FragmentMapper.has_key()=Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#has_key,Method Bio.Prosite.ExPASyDictionary.has_key()=Bio.Prosite.ExPASyDictionary-class.html#has_key,Method Bio.Prosite.Prodoc.ExPASyDictionary.has_key()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#has_key,Method Bio.PubMed.Dictionary.has_key()=Bio.PubMed.Dictionary-class.html#has_key,Method Bio.SwissProt.SProt.ExPASyDictionary.has_key()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#has_key,Method Martel.Parser.MartelAttributeList.has_key()=Martel.Parser.MartelAttributeList-class.html#has_key"><a title="Bio.Crystal.Crystal.has_key
Bio.EUtils.POM.ElementNode.has_key
Bio.GenBank.NCBIDictionary.has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key
Bio.PDB.FragmentMapper'.FragmentMapper.has_key
Bio.Prosite.ExPASyDictionary.has_key
Bio.Prosite.Prodoc.ExPASyDictionary.has_key
Bio.PubMed.Dictionary.has_key
Bio.SwissProt.SProt.ExPASyDictionary.has_key
Martel.Parser.MartelAttributeList.has_key" class="py-name" href="#" onclick="return doclink('link-20', 'has_key', 'link-20');">has_key</a></tt><tt class="py-op">(</tt> <tt id="link-21" class="py-name" targets="Variable Bio.Translate.key=Bio.Translate-module.html#key"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-21', 'key', 'link-21');">key</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt id="link-22" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-22', 'element', 'link-12');">element</a></tt> <tt class="py-op">=</tt> <tt class="py-name">dict</tt><tt class="py-op">[</tt> <tt id="link-23" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-23', 'key', 'link-21');">key</a></tt> <tt class="py-op">]</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-name">dict</tt><tt class="py-op">[</tt> <tt id="link-24" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-24', 'key', 'link-21');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> <tt id="link-25" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-25', 'element', 'link-12');">element</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">]</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">dict</tt><tt class="py-op">[</tt> <tt id="link-26" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-26', 'key', 'link-21');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">val</tt> </tt>
</div><a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> </tt>
<a name="process_dict"></a><div id="process_dict-def"><a name="L63"></a><tt class="py-lineno"> 63</tt> <a class="py-toggle" href="#" id="process_dict-toggle" onclick="return toggle('process_dict');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#process_dict">process_dict</a><tt class="py-op">(</tt> <tt class="py-param">params</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="process_dict-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="process_dict-expanded"><a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">container</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">params</tt> <tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-27', 'element', 'link-12');">element</a></tt> <tt class="py-op">=</tt> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-28', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-29" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-29', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt id="link-30" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-30', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-31" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-31', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-32" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-32', 'key', 'link-21');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-keyword">in</tt> <tt id="link-33" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-33', 'element', 'link-12');">element</a></tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method Bio.Crystal.Crystal.items()=Bio.Crystal.Crystal-class.html#items,Method Bio.EUtils.MultiDict._BaseMultiDict.items()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#items,Variable Bio.Entrez.SerialSet.items=Bio.Entrez.SerialSet-module.html#items,Method Bio.GenBank.NCBIDictionary.items()=Bio.GenBank.NCBIDictionary-class.html#items,Method Bio.Mindy.BaseDB.DictLookup.items()=Bio.Mindy.BaseDB.DictLookup-class.html#items,Method Bio.Prosite.ExPASyDictionary.items()=Bio.Prosite.ExPASyDictionary-class.html#items,Method Bio.Prosite.Prodoc.ExPASyDictionary.items()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#items,Method Bio.PubMed.Dictionary.items()=Bio.PubMed.Dictionary-class.html#items,Method Bio.SwissProt.SProt.ExPASyDictionary.items()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#items,Method Bio.config.Registry.Registry.items()=Bio.config.Registry.Registry-class.html#items,Function Bio.listfns.items()=Bio.listfns-module.html#items,Method BioSQL.BioSeqDatabase.BioSeqDatabase.items()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#items,Method BioSQL.BioSeqDatabase.DBServer.items()=BioSQL.BioSeqDatabase.DBServer-class.html#items,Method Martel.Parser.MartelAttributeList.items()=Martel.Parser.MartelAttributeList-class.html#items"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-34', 'items', 'link-34');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt id="link-35" class="py-name" targets="Function Bio.LocusLink.web_parse.put()=Bio.LocusLink.web_parse-module.html#put"><a title="Bio.LocusLink.web_parse.put" class="py-name" href="#" onclick="return doclink('link-35', 'put', 'link-35');">put</a></tt><tt class="py-op">(</tt> <tt class="py-name">container</tt><tt class="py-op">,</tt> <tt id="link-36" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-36', 'key', 'link-21');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-37" class="py-name"><a title="Bio.LocusLink.web_parse.is_close_token" class="py-name" href="#" onclick="return doclink('link-37', 'is_close_token', 'link-14');">is_close_token</a></tt><tt class="py-op">(</tt> <tt id="link-38" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-38', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-keyword">break</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-39" class="py-name"><a title="Bio.LocusLink.web_parse.is_open_token" class="py-name" href="#" onclick="return doclink('link-39', 'is_open_token', 'link-16');">is_open_token</a></tt><tt class="py-op">(</tt> <tt id="link-40" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-40', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-41', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-42" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-42', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-43', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-44" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-44', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-45" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-45', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">val</tt><tt class="py-op">[</tt> <tt class="py-number">0</tt> <tt class="py-op">]</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt id="link-46" class="py-name"><a title="Bio.LocusLink.web_parse.put" class="py-name" href="#" onclick="return doclink('link-46', 'put', 'link-35');">put</a></tt><tt class="py-op">(</tt> <tt class="py-name">container</tt><tt class="py-op">,</tt> <tt id="link-47" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-47', 'element', 'link-12');">element</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'Element'</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-48" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-48', 'element', 'link-12');">element</a></tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-49', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-50" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-50', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt><tt class="py-op">(</tt> <tt class="py-keyword">not</tt> <tt id="link-51" class="py-name"><a title="Bio.LocusLink.web_parse.is_close_token" class="py-name" href="#" onclick="return doclink('link-51', 'is_close_token', 'link-14');">is_close_token</a></tt><tt class="py-op">(</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt id="link-52" class="py-name"><a title="Bio.LocusLink.web_parse.put" class="py-name" href="#" onclick="return doclink('link-52', 'put', 'link-35');">put</a></tt><tt class="py-op">(</tt> <tt class="py-name">container</tt><tt class="py-op">,</tt> <tt id="link-53" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-53', 'element', 'link-12');">element</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'Element'</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-54" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-54', 'element', 'link-12');">element</a></tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-55', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-56" class="py-name"><a title="Martel.LAX.LAX.element
Martel.LAX.LAXAttrs.element
Martel.LAX.LAXPositions.element" class="py-name" href="#" onclick="return doclink('link-56', 'element', 'link-12');">element</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">container</tt> </tt>
</div><a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> </tt>
<a name="Token"></a><div id="Token-def"><a name="L96"></a><tt class="py-lineno"> 96</tt> <a class="py-toggle" href="#" id="Token-toggle" onclick="return toggle('Token');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Token-class.html">Token</a><tt class="py-op">:</tt> </tt>
</div><div id="Token-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Token-expanded"><a name="Token.__init__"></a><div id="Token.__init__-def"><a name="L97"></a><tt class="py-lineno"> 97</tt> <a class="py-toggle" href="#" id="Token.__init__-toggle" onclick="return toggle('Token.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Token-class.html#__init__">__init__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">token</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Token.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Token.__init__-expanded"><a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">token</tt> <tt class="py-op">=</tt> <tt class="py-name">token</tt> </tt>
</div><a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> </tt>
<a name="Token.__eq__"></a><div id="Token.__eq__-def"><a name="L100"></a><tt class="py-lineno">100</tt> <a class="py-toggle" href="#" id="Token.__eq__-toggle" onclick="return toggle('Token.__eq__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Token-class.html#__eq__">__eq__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">other</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Token.__eq__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Token.__eq__-expanded"><a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">other</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">token</tt> <tt class="py-op">==</tt> <tt class="py-name">other</tt><tt class="py-op">.</tt><tt class="py-name">token</tt><tt class="py-op">:</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">1</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
</div><a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> </tt>
<a name="Token.__ne__"></a><div id="Token.__ne__-def"><a name="L107"></a><tt class="py-lineno">107</tt> <a class="py-toggle" href="#" id="Token.__ne__-toggle" onclick="return toggle('Token.__ne__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Token-class.html#__ne__">__ne__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">other</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Token.__ne__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Token.__ne__-expanded"><a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">other</tt><tt class="py-op">,</tt> <tt id="link-57" class="py-name" targets="Class Bio.Decode.Token=Bio.Decode.Token-class.html,Class Bio.GenBank.LocationParser.Token=Bio.GenBank.LocationParser.Token-class.html,Class Bio.LocusLink.web_parse.Token=Bio.LocusLink.web_parse.Token-class.html"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-57', 'Token', 'link-57');">Token</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">1</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">token</tt> <tt class="py-op">!=</tt> <tt class="py-name">other</tt><tt class="py-op">.</tt><tt class="py-name">token</tt><tt class="py-op">:</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">1</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
</div><a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> </tt>
<a name="Token.__str__"></a><div id="Token.__str__-def"><a name="L114"></a><tt class="py-lineno">114</tt> <a class="py-toggle" href="#" id="Token.__str__-toggle" onclick="return toggle('Token.__str__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Token-class.html#__str__">__str__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Token.__str__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Token.__str__-expanded"><a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">output</tt> <tt class="py-op">=</tt> <tt class="py-string">'token_%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">token</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">output</tt> </tt>
</div></div><a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt id="link-58" class="py-name" targets="Variable Bio.LocusLink.web_parse.open_list=Bio.LocusLink.web_parse-module.html#open_list"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-58', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">=</tt> <tt id="link-59" class="py-name"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-59', 'Token', 'link-57');">Token</a></tt><tt class="py-op">(</tt> <tt class="py-string">'open_list'</tt> <tt class="py-op">)</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"><tt id="link-60" class="py-name" targets="Variable Bio.LocusLink.web_parse.close_list=Bio.LocusLink.web_parse-module.html#close_list"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-60', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">=</tt> <tt id="link-61" class="py-name"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-61', 'Token', 'link-57');">Token</a></tt><tt class="py-op">(</tt> <tt class="py-string">'close_list'</tt> <tt class="py-op">)</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"><tt id="link-62" class="py-name" targets="Variable Bio.LocusLink.web_parse.open_dict=Bio.LocusLink.web_parse-module.html#open_dict"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-62', 'open_dict', 'link-62');">open_dict</a></tt> <tt class="py-op">=</tt> <tt id="link-63" class="py-name"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-63', 'Token', 'link-57');">Token</a></tt><tt class="py-op">(</tt> <tt class="py-string">'open_dict'</tt> <tt class="py-op">)</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"><tt id="link-64" class="py-name" targets="Variable Bio.LocusLink.web_parse.close_dict=Bio.LocusLink.web_parse-module.html#close_dict"><a title="Bio.LocusLink.web_parse.close_dict" class="py-name" href="#" onclick="return doclink('link-64', 'close_dict', 'link-64');">close_dict</a></tt> <tt class="py-op">=</tt> <tt id="link-65" class="py-name"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-65', 'Token', 'link-57');">Token</a></tt><tt class="py-op">(</tt> <tt class="py-string">'close_dict'</tt> <tt class="py-op">)</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> </tt>
<a name="is_open_token"></a><div id="is_open_token-def"><a name="L124"></a><tt class="py-lineno">124</tt> <a class="py-toggle" href="#" id="is_open_token-toggle" onclick="return toggle('is_open_token');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#is_open_token">is_open_token</a><tt class="py-op">(</tt> <tt class="py-param">target</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="is_open_token-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="is_open_token-expanded"><a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">answer</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">target</tt><tt class="py-op">,</tt> <tt id="link-66" class="py-name"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-66', 'Token', 'link-57');">Token</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt> <tt id="link-67" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-67', 'open_list', 'link-58');">open_list</a></tt><tt class="py-op">.</tt><tt id="link-68" class="py-name" targets="Method Bio.Crystal.Chain.__eq__()=Bio.Crystal.Chain-class.html#__eq__,Method Bio.Crystal.Hetero.__eq__()=Bio.Crystal.Hetero-class.html#__eq__,Method Bio.EUtils.Datatypes.CheckLinkSet.__eq__()=Bio.EUtils.Datatypes.CheckLinkSet-class.html#__eq__,Method Bio.EUtils.Datatypes.DBIds.__eq__()=Bio.EUtils.Datatypes.DBIds-class.html#__eq__,Method Bio.EUtils.Datatypes.Date.__eq__()=Bio.EUtils.Datatypes.Date-class.html#__eq__,Method Bio.EUtils.Datatypes.IdCheck.__eq__()=Bio.EUtils.Datatypes.IdCheck-class.html#__eq__,Method Bio.EUtils.Datatypes.IdUrlSet.__eq__()=Bio.EUtils.Datatypes.IdUrlSet-class.html#__eq__,Method Bio.EUtils.Datatypes.Link.__eq__()=Bio.EUtils.Datatypes.Link-class.html#__eq__,Method Bio.EUtils.Datatypes.LinkSetDb.__eq__()=Bio.EUtils.Datatypes.LinkSetDb-class.html#__eq__,Method Bio.EUtils.Datatypes.LinksLinkSet.__eq__()=Bio.EUtils.Datatypes.LinksLinkSet-class.html#__eq__,Method Bio.EUtils.Datatypes.NeighborLinkSet.__eq__()=Bio.EUtils.Datatypes.NeighborLinkSet-class.html#__eq__,Method Bio.EUtils.Datatypes.ObjUrl.__eq__()=Bio.EUtils.Datatypes.ObjUrl-class.html#__eq__,Method Bio.EUtils.Datatypes.Problem.__eq__()=Bio.EUtils.Datatypes.Problem-class.html#__eq__,Method Bio.EUtils.Datatypes.Provider.__eq__()=Bio.EUtils.Datatypes.Provider-class.html#__eq__,Method Bio.EUtils.MultiDict.OrderedMultiDict.__eq__()=Bio.EUtils.MultiDict.OrderedMultiDict-class.html#__eq__,Method Bio.EUtils.MultiDict.UnorderedMultiDict.__eq__()=Bio.EUtils.MultiDict.UnorderedMultiDict-class.html#__eq__,Method Bio.LocusLink.web_parse.Token.__eq__()=Bio.LocusLink.web_parse.Token-class.html#__eq__,Method Bio.Pathway.Reaction.__eq__()=Bio.Pathway.Reaction-class.html#__eq__,Method Bio.Pathway.Rep.Graph.Graph.__eq__()=Bio.Pathway.Rep.Graph.Graph-class.html#__eq__,Method Bio.Pathway.Rep.HashSet.HashSet.__eq__()=Bio.Pathway.Rep.HashSet.HashSet-class.html#__eq__,Method Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__()=Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__eq__,Method Bio.Restriction.Restriction.FormattedSeq.__eq__()=Bio.Restriction.Restriction.FormattedSeq-class.html#__eq__,Method Bio.Restriction.Restriction.RestrictionType.__eq__()=Bio.Restriction.Restriction.RestrictionType-class.html#__eq__"><a title="Bio.Crystal.Chain.__eq__
Bio.Crystal.Hetero.__eq__
Bio.EUtils.Datatypes.CheckLinkSet.__eq__
Bio.EUtils.Datatypes.DBIds.__eq__
Bio.EUtils.Datatypes.Date.__eq__
Bio.EUtils.Datatypes.IdCheck.__eq__
Bio.EUtils.Datatypes.IdUrlSet.__eq__
Bio.EUtils.Datatypes.Link.__eq__
Bio.EUtils.Datatypes.LinkSetDb.__eq__
Bio.EUtils.Datatypes.LinksLinkSet.__eq__
Bio.EUtils.Datatypes.NeighborLinkSet.__eq__
Bio.EUtils.Datatypes.ObjUrl.__eq__
Bio.EUtils.Datatypes.Problem.__eq__
Bio.EUtils.Datatypes.Provider.__eq__
Bio.EUtils.MultiDict.OrderedMultiDict.__eq__
Bio.EUtils.MultiDict.UnorderedMultiDict.__eq__
Bio.LocusLink.web_parse.Token.__eq__
Bio.Pathway.Reaction.__eq__
Bio.Pathway.Rep.Graph.Graph.__eq__
Bio.Pathway.Rep.HashSet.HashSet.__eq__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__
Bio.Restriction.Restriction.FormattedSeq.__eq__
Bio.Restriction.Restriction.RestrictionType.__eq__" class="py-name" href="#" onclick="return doclink('link-68', '__eq__', 'link-68');">__eq__</a></tt><tt class="py-op">(</tt> <tt class="py-name">target</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-op">(</tt> <tt id="link-69" class="py-name"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-69', 'open_dict', 'link-62');">open_dict</a></tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="Bio.Crystal.Chain.__eq__
Bio.Crystal.Hetero.__eq__
Bio.EUtils.Datatypes.CheckLinkSet.__eq__
Bio.EUtils.Datatypes.DBIds.__eq__
Bio.EUtils.Datatypes.Date.__eq__
Bio.EUtils.Datatypes.IdCheck.__eq__
Bio.EUtils.Datatypes.IdUrlSet.__eq__
Bio.EUtils.Datatypes.Link.__eq__
Bio.EUtils.Datatypes.LinkSetDb.__eq__
Bio.EUtils.Datatypes.LinksLinkSet.__eq__
Bio.EUtils.Datatypes.NeighborLinkSet.__eq__
Bio.EUtils.Datatypes.ObjUrl.__eq__
Bio.EUtils.Datatypes.Problem.__eq__
Bio.EUtils.Datatypes.Provider.__eq__
Bio.EUtils.MultiDict.OrderedMultiDict.__eq__
Bio.EUtils.MultiDict.UnorderedMultiDict.__eq__
Bio.LocusLink.web_parse.Token.__eq__
Bio.Pathway.Reaction.__eq__
Bio.Pathway.Rep.Graph.Graph.__eq__
Bio.Pathway.Rep.HashSet.HashSet.__eq__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__
Bio.Restriction.Restriction.FormattedSeq.__eq__
Bio.Restriction.Restriction.RestrictionType.__eq__" class="py-name" href="#" onclick="return doclink('link-70', '__eq__', 'link-68');">__eq__</a></tt><tt class="py-op">(</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt class="py-name">target</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-name">answer</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">answer</tt> </tt>
</div><a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> </tt>
<a name="is_close_token"></a><div id="is_close_token-def"><a name="L132"></a><tt class="py-lineno">132</tt> <a class="py-toggle" href="#" id="is_close_token-toggle" onclick="return toggle('is_close_token');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#is_close_token">is_close_token</a><tt class="py-op">(</tt> <tt class="py-param">target</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="is_close_token-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="is_close_token-expanded"><a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-name">answer</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">target</tt><tt class="py-op">,</tt> <tt id="link-71" class="py-name"><a title="Bio.Decode.Token
Bio.GenBank.LocationParser.Token
Bio.LocusLink.web_parse.Token" class="py-name" href="#" onclick="return doclink('link-71', 'Token', 'link-57');">Token</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt> <tt id="link-72" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-72', 'close_list', 'link-60');">close_list</a></tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="Bio.Crystal.Chain.__eq__
Bio.Crystal.Hetero.__eq__
Bio.EUtils.Datatypes.CheckLinkSet.__eq__
Bio.EUtils.Datatypes.DBIds.__eq__
Bio.EUtils.Datatypes.Date.__eq__
Bio.EUtils.Datatypes.IdCheck.__eq__
Bio.EUtils.Datatypes.IdUrlSet.__eq__
Bio.EUtils.Datatypes.Link.__eq__
Bio.EUtils.Datatypes.LinkSetDb.__eq__
Bio.EUtils.Datatypes.LinksLinkSet.__eq__
Bio.EUtils.Datatypes.NeighborLinkSet.__eq__
Bio.EUtils.Datatypes.ObjUrl.__eq__
Bio.EUtils.Datatypes.Problem.__eq__
Bio.EUtils.Datatypes.Provider.__eq__
Bio.EUtils.MultiDict.OrderedMultiDict.__eq__
Bio.EUtils.MultiDict.UnorderedMultiDict.__eq__
Bio.LocusLink.web_parse.Token.__eq__
Bio.Pathway.Reaction.__eq__
Bio.Pathway.Rep.Graph.Graph.__eq__
Bio.Pathway.Rep.HashSet.HashSet.__eq__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__
Bio.Restriction.Restriction.FormattedSeq.__eq__
Bio.Restriction.Restriction.RestrictionType.__eq__" class="py-name" href="#" onclick="return doclink('link-73', '__eq__', 'link-68');">__eq__</a></tt><tt class="py-op">(</tt> <tt class="py-name">target</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-op">(</tt> <tt id="link-74" class="py-name"><a title="Bio.LocusLink.web_parse.close_dict" class="py-name" href="#" onclick="return doclink('link-74', 'close_dict', 'link-64');">close_dict</a></tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="Bio.Crystal.Chain.__eq__
Bio.Crystal.Hetero.__eq__
Bio.EUtils.Datatypes.CheckLinkSet.__eq__
Bio.EUtils.Datatypes.DBIds.__eq__
Bio.EUtils.Datatypes.Date.__eq__
Bio.EUtils.Datatypes.IdCheck.__eq__
Bio.EUtils.Datatypes.IdUrlSet.__eq__
Bio.EUtils.Datatypes.Link.__eq__
Bio.EUtils.Datatypes.LinkSetDb.__eq__
Bio.EUtils.Datatypes.LinksLinkSet.__eq__
Bio.EUtils.Datatypes.NeighborLinkSet.__eq__
Bio.EUtils.Datatypes.ObjUrl.__eq__
Bio.EUtils.Datatypes.Problem.__eq__
Bio.EUtils.Datatypes.Provider.__eq__
Bio.EUtils.MultiDict.OrderedMultiDict.__eq__
Bio.EUtils.MultiDict.UnorderedMultiDict.__eq__
Bio.LocusLink.web_parse.Token.__eq__
Bio.Pathway.Reaction.__eq__
Bio.Pathway.Rep.Graph.Graph.__eq__
Bio.Pathway.Rep.HashSet.HashSet.__eq__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__
Bio.Restriction.Restriction.FormattedSeq.__eq__
Bio.Restriction.Restriction.RestrictionType.__eq__" class="py-name" href="#" onclick="return doclink('link-75', '__eq__', 'link-68');">__eq__</a></tt><tt class="py-op">(</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-name">target</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-name">answer</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">answer</tt> </tt>
</div><a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> </tt>
<a name="is_token"></a><div id="is_token-def"><a name="L140"></a><tt class="py-lineno">140</tt> <a class="py-toggle" href="#" id="is_token-toggle" onclick="return toggle('is_token');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse-module.html#is_token">is_token</a><tt class="py-op">(</tt> <tt class="py-param">target</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="is_token-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="is_token-expanded"><a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-76" class="py-name"><a title="Bio.LocusLink.web_parse.is_open_token" class="py-name" href="#" onclick="return doclink('link-76', 'is_open_token', 'link-16');">is_open_token</a></tt><tt class="py-op">(</tt> <tt class="py-name">target</tt> <tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt id="link-77" class="py-name"><a title="Bio.LocusLink.web_parse.is_close_token" class="py-name" href="#" onclick="return doclink('link-77', 'is_close_token', 'link-14');">is_close_token</a></tt><tt class="py-op">(</tt> <tt class="py-name">target</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> </tt>
<a name="Url"></a><div id="Url-def"><a name="L143"></a><tt class="py-lineno">143</tt> <a class="py-toggle" href="#" id="Url-toggle" onclick="return toggle('Url');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Url-class.html">Url</a><tt class="py-op">:</tt> </tt>
</div><div id="Url-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Url-expanded"><a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> </tt>
<a name="Url.__init__"></a><div id="Url.__init__-def"><a name="L145"></a><tt class="py-lineno">145</tt> <a class="py-toggle" href="#" id="Url.__init__-toggle" onclick="return toggle('Url.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Url-class.html#__init__">__init__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">url</tt><tt class="py-op">,</tt> <tt class="py-param">label</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt><tt class="py-op">,</tt> <tt class="py-param">description</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Url.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Url.__init__-expanded"><a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">url</tt> <tt class="py-op">=</tt> <tt class="py-name">url</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">label</tt> <tt class="py-op">=</tt> <tt class="py-name">label</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name" targets="Method Bio.Blast.NCBIStandalone._DescriptionConsumer.description()=Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description,Method Bio.Enzyme._RecordConsumer.description()=Bio.Enzyme._RecordConsumer-class.html#description,Method Bio.Prosite._RecordConsumer.description()=Bio.Prosite._RecordConsumer-class.html#description,Function Bio.Std.description()=Bio.Std-module.html#description,Method Bio.SwissProt.SProt._RecordConsumer.description()=Bio.SwissProt.SProt._RecordConsumer-class.html#description,Method Bio.SwissProt.SProt._SequenceConsumer.description()=Bio.SwissProt.SProt._SequenceConsumer-class.html#description,Variable Martel.setup.run_local_tests.description=Martel.setup.run_local_tests-class.html#description"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-78', 'description', 'link-78');">description</a></tt> <tt class="py-op">=</tt> <tt id="link-79" class="py-name"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-79', 'description', 'link-78');">description</a></tt> </tt>
</div><a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> </tt>
<a name="Url.__str__"></a><div id="Url.__str__-def"><a name="L150"></a><tt class="py-lineno">150</tt> <a class="py-toggle" href="#" id="Url.__str__-toggle" onclick="return toggle('Url.__str__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Url-class.html#__str__">__str__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Url.__str__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Url.__str__-expanded"><a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-name">output</tt> <tt class="py-op">=</tt> <tt class="py-string">'%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">label</tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-name">output</tt> <tt class="py-op">=</tt> <tt class="py-name">output</tt> <tt class="py-op">+</tt> <tt class="py-string">'url = %s\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">url</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">output</tt> <tt class="py-op">=</tt> <tt class="py-name">output</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-80', 'description', 'link-78');">description</a></tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">output</tt> </tt>
</div></div><a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> </tt>
<a name="Record"></a><div id="Record-def"><a name="L157"></a><tt class="py-lineno">157</tt> <a class="py-toggle" href="#" id="Record-toggle" onclick="return toggle('Record');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Record-class.html">Record</a><tt class="py-op">(</tt><tt class="py-base-class">dict</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Record-expanded"><a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> </tt>
<a name="Record.__init__"></a><div id="Record.__init__-def"><a name="L159"></a><tt class="py-lineno">159</tt> <a class="py-toggle" href="#" id="Record.__init__-toggle" onclick="return toggle('Record.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Record-class.html#__init__">__init__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Record.__init__-expanded"><a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name" targets="Method Bio.Affy.CelFile.CelConsumer.__init__()=Bio.Affy.CelFile.CelConsumer-class.html#__init__,Method Bio.Affy.CelFile.CelParser.__init__()=Bio.Affy.CelFile.CelParser-class.html#__init__,Method Bio.Affy.CelFile.CelRecord.__init__()=Bio.Affy.CelFile.CelRecord-class.html#__init__,Method Bio.Ais.Immune.__init__()=Bio.Ais.Immune-class.html#__init__,Method Bio.Ais.Lymphocyte.__init__()=Bio.Ais.Lymphocyte-class.html#__init__,Method Bio.Align.AlignInfo.PSSM.__init__()=Bio.Align.AlignInfo.PSSM-class.html#__init__,Method Bio.Align.AlignInfo.SummaryInfo.__init__()=Bio.Align.AlignInfo.SummaryInfo-class.html#__init__,Method Bio.Align.FormatConvert.FormatConverter.__init__()=Bio.Align.FormatConvert.FormatConverter-class.html#__init__,Method Bio.Align.Generic.Alignment.__init__()=Bio.Align.Generic.Alignment-class.html#__init__,Method Bio.AlignAce.Applications.AlignAceCommandline.__init__()=Bio.AlignAce.Applications.AlignAceCommandline-class.html#__init__,Method Bio.AlignAce.Applications.CompareAceCommandline.__init__()=Bio.AlignAce.Applications.CompareAceCommandline-class.html#__init__,Method Bio.AlignAce.Motif.Motif.__init__()=Bio.AlignAce.Motif.Motif-class.html#__init__,Method Bio.AlignAce.Parser.AlignAceConsumer.__init__()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#__init__,Method Bio.AlignAce.Parser.AlignAceParser.__init__()=Bio.AlignAce.Parser.AlignAceParser-class.html#__init__,Method Bio.AlignAce.Parser.CompareAceConsumer.__init__()=Bio.AlignAce.Parser.CompareAceConsumer-class.html#__init__,Method Bio.AlignAce.Parser.CompareAceParser.__init__()=Bio.AlignAce.Parser.CompareAceParser-class.html#__init__,Method Bio.AlignIO.Interfaces.AlignmentIterator.__init__()=Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__,Method Bio.AlignIO.Interfaces.AlignmentWriter.__init__()=Bio.AlignIO.Interfaces.AlignmentWriter-class.html#__init__,Method Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__()=Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__,Method Bio.Alphabet.AlphabetEncoder.__init__()=Bio.Alphabet.AlphabetEncoder-class.html#__init__,Method Bio.Alphabet.Gapped.__init__()=Bio.Alphabet.Gapped-class.html#__init__,Method Bio.Alphabet.HasStopCodon.__init__()=Bio.Alphabet.HasStopCodon-class.html#__init__,Method Bio.Application.AbstractCommandline.__init__()=Bio.Application.AbstractCommandline-class.html#__init__,Method Bio.Application.ApplicationResult.__init__()=Bio.Application.ApplicationResult-class.html#__init__,Method Bio.Application._AbstractParameter.__init__()=Bio.Application._AbstractParameter-class.html#__init__,Method Bio.Blast.Applications.BlastallCommandline.__init__()=Bio.Blast.Applications.BlastallCommandline-class.html#__init__,Method Bio.Blast.Applications.FastacmdCommandline.__init__()=Bio.Blast.Applications.FastacmdCommandline-class.html#__init__,Method Bio.Blast.NCBIStandalone.BlastErrorParser.__init__()=Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#__init__,Method Bio.Blast.NCBIStandalone.BlastParser.__init__()=Bio.Blast.NCBIStandalone.BlastParser-class.html#__init__,Method Bio.Blast.NCBIStandalone.Iterator.__init__()=Bio.Blast.NCBIStandalone.Iterator-class.html#__init__,Method Bio.Blast.NCBIStandalone.PSIBlastParser.__init__()=Bio.Blast.NCBIStandalone.PSIBlastParser-class.html#__init__,Method Bio.Blast.NCBIStandalone._BlastConsumer.__init__()=Bio.Blast.NCBIStandalone._BlastConsumer-class.html#__init__,Method Bio.Blast.NCBIStandalone._BlastErrorConsumer.__init__()=Bio.Blast.NCBIStandalone._BlastErrorConsumer-class.html#__init__,Method Bio.Blast.NCBIStandalone._PSIBlastConsumer.__init__()=Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#__init__,Method Bio.Blast.NCBIWWW.BlastParser.__init__()=Bio.Blast.NCBIWWW.BlastParser-class.html#__init__,Method Bio.Blast.NCBIXML.BlastParser.__init__()=Bio.Blast.NCBIXML.BlastParser-class.html#__init__,Method Bio.Blast.NCBIXML._XMLparser.__init__()=Bio.Blast.NCBIXML._XMLparser-class.html#__init__,Method Bio.Blast.ParseBlastTable.BlastTableEntry.__init__()=Bio.Blast.ParseBlastTable.BlastTableEntry-class.html#__init__,Method Bio.Blast.ParseBlastTable.BlastTableReader.__init__()=Bio.Blast.ParseBlastTable.BlastTableReader-class.html#__init__,Method Bio.Blast.ParseBlastTable.BlastTableRec.__init__()=Bio.Blast.ParseBlastTable.BlastTableRec-class.html#__init__,Method Bio.Blast.Record.Alignment.__init__()=Bio.Blast.Record.Alignment-class.html#__init__,Method Bio.Blast.Record.Blast.__init__()=Bio.Blast.Record.Blast-class.html#__init__,Method Bio.Blast.Record.DatabaseReport.__init__()=Bio.Blast.Record.DatabaseReport-class.html#__init__,Method Bio.Blast.Record.Description.__init__()=Bio.Blast.Record.Description-class.html#__init__,Method Bio.Blast.Record.HSP.__init__()=Bio.Blast.Record.HSP-class.html#__init__,Method Bio.Blast.Record.Header.__init__()=Bio.Blast.Record.Header-class.html#__init__,Method Bio.Blast.Record.MultipleAlignment.__init__()=Bio.Blast.Record.MultipleAlignment-class.html#__init__,Method Bio.Blast.Record.PSIBlast.__init__()=Bio.Blast.Record.PSIBlast-class.html#__init__,Method Bio.Blast.Record.Parameters.__init__()=Bio.Blast.Record.Parameters-class.html#__init__,Method Bio.Blast.Record.Round.__init__()=Bio.Blast.Record.Round-class.html#__init__,Method Bio.CAPS.CAPSMap.__init__()=Bio.CAPS.CAPSMap-class.html#__init__,Method Bio.CAPS.DifferentialCutsite.__init__()=Bio.CAPS.DifferentialCutsite-class.html#__init__,Method Bio.CDD.Iterator.__init__()=Bio.CDD.Iterator-class.html#__init__,Method Bio.CDD.Record.Record.__init__()=Bio.CDD.Record.Record-class.html#__init__,Method Bio.CDD.RecordParser.__init__()=Bio.CDD.RecordParser-class.html#__init__,Method Bio.CDD._RecordConsumer.__init__()=Bio.CDD._RecordConsumer-class.html#__init__,Method Bio.CDD._Scanner.__init__()=Bio.CDD._Scanner-class.html#__init__,Method Bio.Clustalw.ClustalAlignment.__init__()=Bio.Clustalw.ClustalAlignment-class.html#__init__,Method Bio.Clustalw.MultipleAlignCL.__init__()=Bio.Clustalw.MultipleAlignCL-class.html#__init__,Method Bio.Cluster.DataFile.__init__()=Bio.Cluster.DataFile-class.html#__init__,Method Bio.Cluster.Record.__init__()=Bio.Cluster.Record-class.html#__init__,Method Bio.Compass.Iterator.__init__()=Bio.Compass.Iterator-class.html#__init__,Method Bio.Compass.Record.__init__()=Bio.Compass.Record-class.html#__init__,Method Bio.Compass.RecordParser.__init__()=Bio.Compass.RecordParser-class.html#__init__,Method Bio.Compass._Consumer.__init__()=Bio.Compass._Consumer-class.html#__init__,Method Bio.Crystal.Chain.__init__()=Bio.Crystal.Chain-class.html#__init__,Method Bio.Crystal.Crystal.__init__()=Bio.Crystal.Crystal-class.html#__init__,Method Bio.Crystal.CrystalError.__init__()=Bio.Crystal.CrystalError-class.html#__init__,Method Bio.Crystal.Error.__init__()=Bio.Crystal.Error-class.html#__init__,Method Bio.Crystal.Hetero.__init__()=Bio.Crystal.Hetero-class.html#__init__,Method Bio.DBXRef.DBXRef.__init__()=Bio.DBXRef.DBXRef-class.html#__init__,Method Bio.Data.CodonTable.AmbiguousCodonTable.__init__()=Bio.Data.CodonTable.AmbiguousCodonTable-class.html#__init__,Method Bio.Data.CodonTable.AmbiguousForwardTable.__init__()=Bio.Data.CodonTable.AmbiguousForwardTable-class.html#__init__,Method Bio.Data.CodonTable.CodonTable.__init__()=Bio.Data.CodonTable.CodonTable-class.html#__init__,Method Bio.Data.CodonTable.NCBICodonTable.__init__()=Bio.Data.CodonTable.NCBICodonTable-class.html#__init__,Method Bio.Decode.DecodeParser.__init__()=Bio.Decode.DecodeParser-class.html#__init__,Method Bio.Decode.DecodeScanner.__init__()=Bio.Decode.DecodeScanner-class.html#__init__,Method Bio.Decode.Float.__init__()=Bio.Decode.Float-class.html#__init__,Method Bio.Decode.Function.__init__()=Bio.Decode.Function-class.html#__init__,Method Bio.Decode.FunctionCall.__init__()=Bio.Decode.FunctionCall-class.html#__init__,Method Bio.Decode.FunctionCallChain.__init__()=Bio.Decode.FunctionCallChain-class.html#__init__,Method Bio.Decode.FunctionName.__init__()=Bio.Decode.FunctionName-class.html#__init__,Method Bio.Decode.Integer.__init__()=Bio.Decode.Integer-class.html#__init__,Method Bio.Decode.String.__init__()=Bio.Decode.String-class.html#__init__,Method Bio.Decode.Token.__init__()=Bio.Decode.Token-class.html#__init__,Method Bio.Decode.ValueToken.__init__()=Bio.Decode.ValueToken-class.html#__init__,Method Bio.DocSQL.Create.__init__()=Bio.DocSQL.Create-class.html#__init__,Method Bio.DocSQL.Insert.__init__()=Bio.DocSQL.Insert-class.html#__init__,Method Bio.DocSQL.IterationCursor.__init__()=Bio.DocSQL.IterationCursor-class.html#__init__,Method Bio.DocSQL.Query.__init__()=Bio.DocSQL.Query-class.html#__init__,Method Bio.DocSQL.QueryAll.__init__()=Bio.DocSQL.QueryAll-class.html#__init__,Method Bio.DocSQL.QueryGeneric.__init__()=Bio.DocSQL.QueryGeneric-class.html#__init__,Method Bio.DocSQL.QueryRow.__init__()=Bio.DocSQL.QueryRow-class.html#__init__,Method Bio.DocSQL.QuerySingle.__init__()=Bio.DocSQL.QuerySingle-class.html#__init__,Method Bio.ECell.ECellError.__init__()=Bio.ECell.ECellError-class.html#__init__,Method Bio.ECell.Error.__init__()=Bio.ECell.Error-class.html#__init__,Method Bio.ECell.Iterator.__init__()=Bio.ECell.Iterator-class.html#__init__,Method Bio.ECell.Record.Record.__init__()=Bio.ECell.Record.Record-class.html#__init__,Method Bio.ECell.RecordParser.__init__()=Bio.ECell.RecordParser-class.html#__init__,Method Bio.ECell._RecordConsumer.__init__()=Bio.ECell._RecordConsumer-class.html#__init__,Method Bio.ECell._Scanner.__init__()=Bio.ECell._Scanner-class.html#__init__,Method Bio.EUtils.Config.DatabaseInfo.__init__()=Bio.EUtils.Config.DatabaseInfo-class.html#__init__,Method Bio.EUtils.DBIdsClient.BaseDBIdsRecordSet.__init__()=Bio.EUtils.DBIdsClient.BaseDBIdsRecordSet-class.html#__init__,Method Bio.EUtils.DBIdsClient.DBIdsClient.__init__()=Bio.EUtils.DBIdsClient.DBIdsClient-class.html#__init__,Method Bio.EUtils.DBIdsClient.DBIdsLookup.__init__()=Bio.EUtils.DBIdsClient.DBIdsLookup-class.html#__init__,Method Bio.EUtils.Datatypes.BinaryOp.__init__()=Bio.EUtils.Datatypes.BinaryOp-class.html#__init__,Method Bio.EUtils.Datatypes.CheckLinkSet.__init__()=Bio.EUtils.Datatypes.CheckLinkSet-class.html#__init__,Method Bio.EUtils.Datatypes.DBIds.__init__()=Bio.EUtils.Datatypes.DBIds-class.html#__init__,Method Bio.EUtils.Datatypes.Date.__init__()=Bio.EUtils.Datatypes.Date-class.html#__init__,Method Bio.EUtils.Datatypes.DateRange.__init__()=Bio.EUtils.Datatypes.DateRange-class.html#__init__,Method Bio.EUtils.Datatypes.EUtilsSearchError.__init__()=Bio.EUtils.Datatypes.EUtilsSearchError-class.html#__init__,Method Bio.EUtils.Datatypes.IdCheck.__init__()=Bio.EUtils.Datatypes.IdCheck-class.html#__init__,Method Bio.EUtils.Datatypes.IdUrlSet.__init__()=Bio.EUtils.Datatypes.IdUrlSet-class.html#__init__,Method Bio.EUtils.Datatypes.Link.__init__()=Bio.EUtils.Datatypes.Link-class.html#__init__,Method Bio.EUtils.Datatypes.LinkSetDb.__init__()=Bio.EUtils.Datatypes.LinkSetDb-class.html#__init__,Method Bio.EUtils.Datatypes.LinksLinkSet.__init__()=Bio.EUtils.Datatypes.LinksLinkSet-class.html#__init__,Method Bio.EUtils.Datatypes.NeighborLinkSet.__init__()=Bio.EUtils.Datatypes.NeighborLinkSet-class.html#__init__,Method Bio.EUtils.Datatypes.ObjUrl.__init__()=Bio.EUtils.Datatypes.ObjUrl-class.html#__init__,Method Bio.EUtils.Datatypes.PostResult.__init__()=Bio.EUtils.Datatypes.PostResult-class.html#__init__,Method Bio.EUtils.Datatypes.Problem.__init__()=Bio.EUtils.Datatypes.Problem-class.html#__init__,Method Bio.EUtils.Datatypes.Provider.__init__()=Bio.EUtils.Datatypes.Provider-class.html#__init__,Method Bio.EUtils.Datatypes.Range.__init__()=Bio.EUtils.Datatypes.Range-class.html#__init__,Method Bio.EUtils.Datatypes.SearchResult.__init__()=Bio.EUtils.Datatypes.SearchResult-class.html#__init__,Method Bio.EUtils.Datatypes.Summary.__init__()=Bio.EUtils.Datatypes.Summary-class.html#__init__,Method Bio.EUtils.Datatypes.Term.__init__()=Bio.EUtils.Datatypes.Term-class.html#__init__,Method Bio.EUtils.Datatypes.WithinNDays.__init__()=Bio.EUtils.Datatypes.WithinNDays-class.html#__init__,Method Bio.EUtils.HistoryClient.BaseHistoryRecordSet.__init__()=Bio.EUtils.HistoryClient.BaseHistoryRecordSet-class.html#__init__,Method Bio.EUtils.HistoryClient.HistoryClient.__init__()=Bio.EUtils.HistoryClient.HistoryClient-class.html#__init__,Method Bio.EUtils.HistoryClient.HistoryCookie.__init__()=Bio.EUtils.HistoryClient.HistoryCookie-class.html#__init__,Method Bio.EUtils.HistoryClient.HistoryLookup.__init__()=Bio.EUtils.HistoryClient.HistoryLookup-class.html#__init__,Method Bio.EUtils.HistoryClient.HistoryRecord.__init__()=Bio.EUtils.HistoryClient.HistoryRecord-class.html#__init__,Method Bio.EUtils.MultiDict.OrderedMultiDict.__init__()=Bio.EUtils.MultiDict.OrderedMultiDict-class.html#__init__,Method Bio.EUtils.MultiDict.UnorderedMultiDict.__init__()=Bio.EUtils.MultiDict.UnorderedMultiDict-class.html#__init__,Method Bio.EUtils.POM.Comment.__init__()=Bio.EUtils.POM.Comment-class.html#__init__,Method Bio.EUtils.POM.ContentModel.__init__()=Bio.EUtils.POM.ContentModel-class.html#__init__,Method Bio.EUtils.POM.DTDConsumerForSourceGeneration.__init__()=Bio.EUtils.POM.DTDConsumerForSourceGeneration-class.html#__init__,Method Bio.EUtils.POM.ElementNode.__init__()=Bio.EUtils.POM.ElementNode-class.html#__init__,Method Bio.EUtils.POM.IndentedText.__init__()=Bio.EUtils.POM.IndentedText-class.html#__init__,Method Bio.EUtils.POM.ObjectParserHandler.__init__()=Bio.EUtils.POM.ObjectParserHandler-class.html#__init__,Method Bio.EUtils.POM.POMDocument.__init__()=Bio.EUtils.POM.POMDocument-class.html#__init__,Method Bio.EUtils.POM.XMLAttribute.__init__()=Bio.EUtils.POM.XMLAttribute-class.html#__init__,Method Bio.EUtils.POM._ContentModelGenerator.__init__()=Bio.EUtils.POM._ContentModelGenerator-class.html#__init__,Method Bio.EUtils.ReseekFile.ReseekFile.__init__()=Bio.EUtils.ReseekFile.ReseekFile-class.html#__init__,Method Bio.EUtils.ThinClient.ThinClient.__init__()=Bio.EUtils.ThinClient.ThinClient-class.html#__init__,Method Bio.EUtils.parse.UsePOMParser.__init__()=Bio.EUtils.parse.UsePOMParser-class.html#__init__,Method Bio.EUtils.sourcegen.ClassHolder.__init__()=Bio.EUtils.sourcegen.ClassHolder-class.html#__init__,Method Bio.EUtils.sourcegen.FunctionHolder.__init__()=Bio.EUtils.sourcegen.FunctionHolder-class.html#__init__,Method Bio.EUtils.sourcegen.MethodHolder.__init__()=Bio.EUtils.sourcegen.MethodHolder-class.html#__init__,Method Bio.EUtils.sourcegen.SourceFile.__init__()=Bio.EUtils.sourcegen.SourceFile-class.html#__init__,Method Bio.EUtils.sourcegen.SourceGen.__init__()=Bio.EUtils.sourcegen.SourceGen-class.html#__init__,Method Bio.Emboss.Applications.EConsenseCommandline.__init__()=Bio.Emboss.Applications.EConsenseCommandline-class.html#__init__,Method Bio.Emboss.Applications.EInvertedCommandline.__init__()=Bio.Emboss.Applications.EInvertedCommandline-class.html#__init__,Method Bio.Emboss.Applications.ENeighborCommandline.__init__()=Bio.Emboss.Applications.ENeighborCommandline-class.html#__init__,Method Bio.Emboss.Applications.EProtDistCommandline.__init__()=Bio.Emboss.Applications.EProtDistCommandline-class.html#__init__,Method Bio.Emboss.Applications.EProtParsCommandline.__init__()=Bio.Emboss.Applications.EProtParsCommandline-class.html#__init__,Method Bio.Emboss.Applications.ESeqBootCommandline.__init__()=Bio.Emboss.Applications.ESeqBootCommandline-class.html#__init__,Method Bio.Emboss.Applications.ETandemCommandline.__init__()=Bio.Emboss.Applications.ETandemCommandline-class.html#__init__,Method Bio.Emboss.Applications.Est2GenomeCommandline.__init__()=Bio.Emboss.Applications.Est2GenomeCommandline-class.html#__init__,Method Bio.Emboss.Applications.FuzznucCommandline.__init__()=Bio.Emboss.Applications.FuzznucCommandline-class.html#__init__,Method Bio.Emboss.Applications.PalindromeCommandline.__init__()=Bio.Emboss.Applications.PalindromeCommandline-class.html#__init__,Method Bio.Emboss.Applications.Primer3Commandline.__init__()=Bio.Emboss.Applications.Primer3Commandline-class.html#__init__,Method Bio.Emboss.Applications.PrimerSearchCommandline.__init__()=Bio.Emboss.Applications.PrimerSearchCommandline-class.html#__init__,Method Bio.Emboss.Applications.TranalignCommandline.__init__()=Bio.Emboss.Applications.TranalignCommandline-class.html#__init__,Method Bio.Emboss.Applications.WaterCommandline.__init__()=Bio.Emboss.Applications.WaterCommandline-class.html#__init__,Method Bio.Emboss.Primer.Primer3Parser.__init__()=Bio.Emboss.Primer.Primer3Parser-class.html#__init__,Method Bio.Emboss.Primer.Primer3Primers.__init__()=Bio.Emboss.Primer.Primer3Primers-class.html#__init__,Method Bio.Emboss.Primer.Primer3Record.__init__()=Bio.Emboss.Primer.Primer3Record-class.html#__init__,Method Bio.Emboss.Primer.PrimerSearchAmplifier.__init__()=Bio.Emboss.Primer.PrimerSearchAmplifier-class.html#__init__,Method Bio.Emboss.Primer.PrimerSearchInputRecord.__init__()=Bio.Emboss.Primer.PrimerSearchInputRecord-class.html#__init__,Method Bio.Emboss.Primer.PrimerSearchOutputRecord.__init__()=Bio.Emboss.Primer.PrimerSearchOutputRecord-class.html#__init__,Method Bio.Emboss.Primer.PrimerSearchParser.__init__()=Bio.Emboss.Primer.PrimerSearchParser-class.html#__init__,Method Bio.Emboss.Primer._Primer3RecordConsumer.__init__()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#__init__,Method Bio.Emboss.Primer._Primer3Scanner.__init__()=Bio.Emboss.Primer._Primer3Scanner-class.html#__init__,Method Bio.Emboss.Primer._PrimerSearchRecordConsumer.__init__()=Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#__init__,Method Bio.Emboss.Primer._PrimerSearchScanner.__init__()=Bio.Emboss.Primer._PrimerSearchScanner-class.html#__init__,Method Bio.Entrez.Parser.DataHandler.__init__()=Bio.Entrez.Parser.DataHandler-class.html#__init__,Method Bio.Entrez.Parser.StructureElement.__init__()=Bio.Entrez.Parser.StructureElement-class.html#__init__,Method Bio.Enzyme.DataRecord.__init__()=Bio.Enzyme.DataRecord-class.html#__init__,Method Bio.Enzyme.EnzymeRecord.__init__()=Bio.Enzyme.EnzymeRecord-class.html#__init__,Method Bio.Enzyme.Iterator.__init__()=Bio.Enzyme.Iterator-class.html#__init__,Method Bio.Enzyme.RecordParser.__init__()=Bio.Enzyme.RecordParser-class.html#__init__,Method Bio.Enzyme._RecordConsumer.__init__()=Bio.Enzyme._RecordConsumer-class.html#__init__,Method Bio.FSSP.FSSPAlignDict.__init__()=Bio.FSSP.FSSPAlignDict-class.html#__init__,Method Bio.FSSP.FSSPAlignRec.__init__()=Bio.FSSP.FSSPAlignRec-class.html#__init__,Method Bio.FSSP.FSSPHeader.__init__()=Bio.FSSP.FSSPHeader-class.html#__init__,Method Bio.FSSP.FSSPSumRec.__init__()=Bio.FSSP.FSSPSumRec-class.html#__init__,Method Bio.FSSP.FSSPTools.FSSPMultAlign.__init__()=Bio.FSSP.FSSPTools.FSSPMultAlign-class.html#__init__,Method Bio.FSSP.PosAlign.__init__()=Bio.FSSP.PosAlign-class.html#__init__,Method Bio.FSSP.fssp_rec.fff_rec.__init__()=Bio.FSSP.fssp_rec.fff_rec-class.html#__init__,Method Bio.Fasta.FastaAlign.FastaAlignment.__init__()=Bio.Fasta.FastaAlign.FastaAlignment-class.html#__init__,Method Bio.Fasta.Iterator.__init__()=Bio.Fasta.Iterator-class.html#__init__,Method Bio.Fasta.Record.__init__()=Bio.Fasta.Record-class.html#__init__,Method Bio.Fasta.RecordParser.__init__()=Bio.Fasta.RecordParser-class.html#__init__,Method Bio.Fasta.SequenceParser.__init__()=Bio.Fasta.SequenceParser-class.html#__init__,Method Bio.File.SGMLHandle.__init__()=Bio.File.SGMLHandle-class.html#__init__,Method Bio.File.SGMLStripper.MyParser.__init__()=Bio.File.SGMLStripper.MyParser-class.html#__init__,Method Bio.File.SGMLStripper.__init__()=Bio.File.SGMLStripper-class.html#__init__,Method Bio.File.UndoHandle.__init__()=Bio.File.UndoHandle-class.html#__init__,Method Bio.FilteredReader.FilteredReader.__init__()=Bio.FilteredReader.FilteredReader-class.html#__init__,Method Bio.GA.Crossover.General.SafeFitnessCrossover.__init__()=Bio.GA.Crossover.General.SafeFitnessCrossover-class.html#__init__,Method Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.__init__()=Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#__init__,Method Bio.GA.Crossover.GeneralPoint.InterleaveCrossover.__init__()=Bio.GA.Crossover.GeneralPoint.InterleaveCrossover-class.html#__init__,Method Bio.GA.Crossover.Point.SinglePointCrossover.__init__()=Bio.GA.Crossover.Point.SinglePointCrossover-class.html#__init__,Method Bio.GA.Crossover.TwoPoint.TwoPointCrossover.__init__()=Bio.GA.Crossover.TwoPoint.TwoPointCrossover-class.html#__init__,Method Bio.GA.Crossover.Uniform.UniformCrossover.__init__()=Bio.GA.Crossover.Uniform.UniformCrossover-class.html#__init__,Method Bio.GA.Evolver.GenerationEvolver.__init__()=Bio.GA.Evolver.GenerationEvolver-class.html#__init__,Method Bio.GA.Evolver.SteadyStateEvolver.__init__()=Bio.GA.Evolver.SteadyStateEvolver-class.html#__init__,Method Bio.GA.Mutation.General.SafeFitnessMutation.__init__()=Bio.GA.Mutation.General.SafeFitnessMutation-class.html#__init__,Method Bio.GA.Mutation.Simple.ConversionMutation.__init__()=Bio.GA.Mutation.Simple.ConversionMutation-class.html#__init__,Method Bio.GA.Mutation.Simple.SinglePositionMutation.__init__()=Bio.GA.Mutation.Simple.SinglePositionMutation-class.html#__init__,Method Bio.GA.Organism.Organism.__init__()=Bio.GA.Organism.Organism-class.html#__init__,Method Bio.GA.Repair.Stabilizing.AmbiguousRepair.__init__()=Bio.GA.Repair.Stabilizing.AmbiguousRepair-class.html#__init__,Method Bio.GA.Selection.Abstract.AbstractSelection.__init__()=Bio.GA.Selection.Abstract.AbstractSelection-class.html#__init__,Method Bio.GA.Selection.Diversity.DiversitySelection.__init__()=Bio.GA.Selection.Diversity.DiversitySelection-class.html#__init__,Method Bio.GA.Selection.RouletteWheel.RouletteWheelSelection.__init__()=Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html#__init__,Method Bio.GA.Selection.Tournament.TournamentSelection.__init__()=Bio.GA.Selection.Tournament.TournamentSelection-class.html#__init__,Method Bio.GFF.Connection.__init__()=Bio.GFF.Connection-class.html#__init__,Method Bio.GFF.Feature.__init__()=Bio.GFF.Feature-class.html#__init__,Method Bio.GFF.FeatureAggregate.__init__()=Bio.GFF.FeatureAggregate-class.html#__init__,Method Bio.GFF.FeatureQuery.__init__()=Bio.GFF.FeatureQuery-class.html#__init__,Method Bio.GFF.FeatureQueryRow.__init__()=Bio.GFF.FeatureQueryRow-class.html#__init__,Method Bio.GFF.GenericTools.ArgsParser.__init__()=Bio.GFF.GenericTools.ArgsParser-class.html#__init__,Method Bio.GFF.GenericTools.Surrogate.__init__()=Bio.GFF.GenericTools.Surrogate-class.html#__init__,Method Bio.GFF.GenericTools.TempFile.__init__()=Bio.GFF.GenericTools.TempFile-class.html#__init__,Method Bio.GFF.RetrieveSeqname.__init__()=Bio.GFF.RetrieveSeqname-class.html#__init__,Method Bio.GFF.Segment.__init__()=Bio.GFF.Segment-class.html#__init__,Method Bio.GFF.easy.FeatureDict.__init__()=Bio.GFF.easy.FeatureDict-class.html#__init__,Method Bio.GFF.easy.Location.__init__()=Bio.GFF.easy.Location-class.html#__init__,Method Bio.GFF.easy.LocationFromCoords.__init__()=Bio.GFF.easy.LocationFromCoords-class.html#__init__,Method Bio.GFF.easy.LocationFromString.__init__()=Bio.GFF.easy.LocationFromString-class.html#__init__,Method Bio.GFF.easy.LocationJoin.__init__()=Bio.GFF.easy.LocationJoin-class.html#__init__,Method Bio.GenBank.FeatureParser.__init__()=Bio.GenBank.FeatureParser-class.html#__init__,Method Bio.GenBank.Iterator.__init__()=Bio.GenBank.Iterator-class.html#__init__,Method Bio.GenBank.LocationParser.AbsoluteLocation.__init__()=Bio.GenBank.LocationParser.AbsoluteLocation-class.html#__init__,Method Bio.GenBank.LocationParser.Between.__init__()=Bio.GenBank.LocationParser.Between-class.html#__init__,Method Bio.GenBank.LocationParser.FeatureName.__init__()=Bio.GenBank.LocationParser.FeatureName-class.html#__init__,Method Bio.GenBank.LocationParser.Function.__init__()=Bio.GenBank.LocationParser.Function-class.html#__init__,Method Bio.GenBank.LocationParser.HighBound.__init__()=Bio.GenBank.LocationParser.HighBound-class.html#__init__,Method Bio.GenBank.LocationParser.Integer.__init__()=Bio.GenBank.LocationParser.Integer-class.html#__init__,Method Bio.GenBank.LocationParser.LocationParser.__init__()=Bio.GenBank.LocationParser.LocationParser-class.html#__init__,Method Bio.GenBank.LocationParser.LocationScanner.__init__()=Bio.GenBank.LocationParser.LocationScanner-class.html#__init__,Method Bio.GenBank.LocationParser.LowBound.__init__()=Bio.GenBank.LocationParser.LowBound-class.html#__init__,Method Bio.GenBank.LocationParser.Path.__init__()=Bio.GenBank.LocationParser.Path-class.html#__init__,Method Bio.GenBank.LocationParser.Range.__init__()=Bio.GenBank.LocationParser.Range-class.html#__init__,Method Bio.GenBank.LocationParser.Symbol.__init__()=Bio.GenBank.LocationParser.Symbol-class.html#__init__,Method Bio.GenBank.LocationParser.Token.__init__()=Bio.GenBank.LocationParser.Token-class.html#__init__,Method Bio.GenBank.LocationParser.TwoBound.__init__()=Bio.GenBank.LocationParser.TwoBound-class.html#__init__,Method Bio.GenBank.NCBIDictionary.__init__()=Bio.GenBank.NCBIDictionary-class.html#__init__,Method Bio.GenBank.Record.Feature.__init__()=Bio.GenBank.Record.Feature-class.html#__init__,Method Bio.GenBank.Record.Qualifier.__init__()=Bio.GenBank.Record.Qualifier-class.html#__init__,Method Bio.GenBank.Record.Record.__init__()=Bio.GenBank.Record.Record-class.html#__init__,Method Bio.GenBank.Record.Reference.__init__()=Bio.GenBank.Record.Reference-class.html#__init__,Method Bio.GenBank.RecordParser.__init__()=Bio.GenBank.RecordParser-class.html#__init__,Method Bio.GenBank.Scanner.InsdcScanner.__init__()=Bio.GenBank.Scanner.InsdcScanner-class.html#__init__,Method Bio.GenBank._BaseGenBankConsumer.__init__()=Bio.GenBank._BaseGenBankConsumer-class.html#__init__,Method Bio.GenBank._FeatureConsumer.__init__()=Bio.GenBank._FeatureConsumer-class.html#__init__,Method Bio.GenBank._RecordConsumer.__init__()=Bio.GenBank._RecordConsumer-class.html#__init__,Method Bio.GenBank.utils.FeatureValueCleaner.__init__()=Bio.GenBank.utils.FeatureValueCleaner-class.html#__init__,Method Bio.Geo.Record.Record.__init__()=Bio.Geo.Record.Record-class.html#__init__,Method Bio.Gobase.Dictionary.__init__()=Bio.Gobase.Dictionary-class.html#__init__,Method Bio.Gobase.GeneRecord.__init__()=Bio.Gobase.GeneRecord-class.html#__init__,Method Bio.Gobase.Iterator.__init__()=Bio.Gobase.Iterator-class.html#__init__,Method Bio.Gobase.ProteinRecord.__init__()=Bio.Gobase.ProteinRecord-class.html#__init__,Method Bio.Gobase.Record.__init__()=Bio.Gobase.Record-class.html#__init__,Method Bio.Gobase.RecordParser.__init__()=Bio.Gobase.RecordParser-class.html#__init__,Method Bio.Gobase.SequenceRecord.__init__()=Bio.Gobase.SequenceRecord-class.html#__init__,Method Bio.Gobase._RecordConsumer.__init__()=Bio.Gobase._RecordConsumer-class.html#__init__,Method Bio.Graphics.BasicChromosome.Chromosome.__init__()=Bio.Graphics.BasicChromosome.Chromosome-class.html#__init__,Method Bio.Graphics.BasicChromosome.ChromosomeSegment.__init__()=Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#__init__,Method Bio.Graphics.BasicChromosome.Organism.__init__()=Bio.Graphics.BasicChromosome.Organism-class.html#__init__,Method Bio.Graphics.BasicChromosome.TelomereSegment.__init__()=Bio.Graphics.BasicChromosome.TelomereSegment-class.html#__init__,Method Bio.Graphics.BasicChromosome._ChromosomeComponent.__init__()=Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#__init__,Method Bio.Graphics.Comparative.ComparativeScatterPlot.__init__()=Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#__init__,Method Bio.Graphics.DisplayRepresentation.ChromosomeCounts.__init__()=Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#__init__,Method Bio.Graphics.Distribution.BarChartDistribution.__init__()=Bio.Graphics.Distribution.BarChartDistribution-class.html#__init__,Method Bio.Graphics.Distribution.DistributionPage.__init__()=Bio.Graphics.Distribution.DistributionPage-class.html#__init__,Method Bio.Graphics.Distribution.LineDistribution.__init__()=Bio.Graphics.Distribution.LineDistribution-class.html#__init__,Method Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.__init__()=Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#__init__,Method Bio.HMM.DynamicProgramming.LogDPAlgorithms.__init__()=Bio.HMM.DynamicProgramming.LogDPAlgorithms-class.html#__init__,Method Bio.HMM.DynamicProgramming.ScaledDPAlgorithms.__init__()=Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html#__init__,Method Bio.HMM.MarkovModel.HiddenMarkovModel.__init__()=Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#__init__,Method Bio.HMM.MarkovModel.MarkovModelBuilder.__init__()=Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#__init__,Method Bio.HMM.Trainer.AbstractTrainer.__init__()=Bio.HMM.Trainer.AbstractTrainer-class.html#__init__,Method Bio.HMM.Trainer.BaumWelchTrainer.__init__()=Bio.HMM.Trainer.BaumWelchTrainer-class.html#__init__,Method Bio.HMM.Trainer.KnownStateTrainer.__init__()=Bio.HMM.Trainer.KnownStateTrainer-class.html#__init__,Method Bio.HMM.Trainer.TrainingSequence.__init__()=Bio.HMM.Trainer.TrainingSequence-class.html#__init__,Method Bio.HotRand.HotCache.__init__()=Bio.HotRand.HotCache-class.html#__init__,Method Bio.HotRand.HotRandom.__init__()=Bio.HotRand.HotRandom-class.html#__init__,Method Bio.Index._InMemoryIndex.__init__()=Bio.Index._InMemoryIndex-class.html#__init__,Method Bio.Index._ShelveIndex.__init__()=Bio.Index._ShelveIndex-class.html#__init__,Method Bio.IntelliGenetics.IntelliGeneticsReader.__init__()=Bio.IntelliGenetics.IntelliGeneticsReader-class.html#__init__,Method Bio.IntelliGenetics.Iterator.__init__()=Bio.IntelliGenetics.Iterator-class.html#__init__,Method Bio.IntelliGenetics.Record.Record.__init__()=Bio.IntelliGenetics.Record.Record-class.html#__init__,Method Bio.IntelliGenetics.RecordParser.__init__()=Bio.IntelliGenetics.RecordParser-class.html#__init__,Method Bio.IntelliGenetics._RecordConsumer.__init__()=Bio.IntelliGenetics._RecordConsumer-class.html#__init__,Method Bio.IntelliGenetics._Scanner.__init__()=Bio.IntelliGenetics._Scanner-class.html#__init__,Method Bio.KDTree.CKDTree.KDTree.__init__()=Bio.KDTree.CKDTree.KDTree-class.html#__init__,Method Bio.KDTree.CKDTree.KDTreePtr.__init__()=Bio.KDTree.CKDTree.KDTreePtr-class.html#__init__,Method Bio.KDTree.KDTree.KDTree.__init__()=Bio.KDTree.KDTree.KDTree-class.html#__init__,Method Bio.KEGG.Compound.Record.__init__()=Bio.KEGG.Compound.Record-class.html#__init__,Method Bio.KEGG.Enzyme.Record.__init__()=Bio.KEGG.Enzyme.Record-class.html#__init__,Method Bio.LocusLink.Iterator.__init__()=Bio.LocusLink.Iterator-class.html#__init__,Method Bio.LocusLink.Record.__init__()=Bio.LocusLink.Record-class.html#__init__,Method Bio.LocusLink.RecordParser.__init__()=Bio.LocusLink.RecordParser-class.html#__init__,Method Bio.LocusLink._RecordConsumer.__init__()=Bio.LocusLink._RecordConsumer-class.html#__init__,Method Bio.LocusLink._Scanner.__init__()=Bio.LocusLink._Scanner-class.html#__init__,Method Bio.LocusLink.web_parse.Record.__init__()=Bio.LocusLink.web_parse.Record-class.html#__init__,Method Bio.LocusLink.web_parse.Token.__init__()=Bio.LocusLink.web_parse.Token-class.html#__init__,Method Bio.LocusLink.web_parse.Url.__init__()=Bio.LocusLink.web_parse.Url-class.html#__init__,Method Bio.LogisticRegression.LogisticRegression.__init__()=Bio.LogisticRegression.LogisticRegression-class.html#__init__,Method Bio.MEME.Motif.Instance.__init__()=Bio.MEME.Motif.Instance-class.html#__init__,Method Bio.MEME.Motif.MEMEMotif.__init__()=Bio.MEME.Motif.MEMEMotif-class.html#__init__,Method Bio.MEME.Motif.Motif.__init__()=Bio.MEME.Motif.Motif-class.html#__init__,Method Bio.MEME.Parser.MASTParser.__init__()=Bio.MEME.Parser.MASTParser-class.html#__init__,Method Bio.MEME.Parser.MASTRecord.__init__()=Bio.MEME.Parser.MASTRecord-class.html#__init__,Method Bio.MEME.Parser.MEMEParser.__init__()=Bio.MEME.Parser.MEMEParser-class.html#__init__,Method Bio.MEME.Parser.MEMERecord.__init__()=Bio.MEME.Parser.MEMERecord-class.html#__init__,Method Bio.MEME.Parser._MASTConsumer.__init__()=Bio.MEME.Parser._MASTConsumer-class.html#__init__,Method Bio.MEME.Parser._MEMEConsumer.__init__()=Bio.MEME.Parser._MEMEConsumer-class.html#__init__,Method Bio.MarkovModel.MarkovModel.__init__()=Bio.MarkovModel.MarkovModel-class.html#__init__,Method Bio.MaxEntropy.MaxEntropy.__init__()=Bio.MaxEntropy.MaxEntropy-class.html#__init__,Method Bio.Medline.Iterator.__init__()=Bio.Medline.Iterator-class.html#__init__,Method Bio.Medline.Record.__init__()=Bio.Medline.Record-class.html#__init__,Method Bio.Medline.RecordParser.__init__()=Bio.Medline.RecordParser-class.html#__init__,Method Bio.Medline._RecordConsumer.__init__()=Bio.Medline._RecordConsumer-class.html#__init__,Method Bio.MetaTool.Iterator.__init__()=Bio.MetaTool.Iterator-class.html#__init__,Method Bio.MetaTool.Record.Metabolite.__init__()=Bio.MetaTool.Record.Metabolite-class.html#__init__,Method Bio.MetaTool.Record.MetaboliteRole.__init__()=Bio.MetaTool.Record.MetaboliteRole-class.html#__init__,Method Bio.MetaTool.Record.PathwayTransform.__init__()=Bio.MetaTool.Record.PathwayTransform-class.html#__init__,Method Bio.MetaTool.Record.Record.__init__()=Bio.MetaTool.Record.Record-class.html#__init__,Method Bio.MetaTool.RecordParser.__init__()=Bio.MetaTool.RecordParser-class.html#__init__,Method Bio.MetaTool._RecordConsumer.__init__()=Bio.MetaTool._RecordConsumer-class.html#__init__,Method Bio.MetaTool._Scanner.__init__()=Bio.MetaTool._Scanner-class.html#__init__,Method Bio.Mindy.BaseDB.OpenDB.__init__()=Bio.Mindy.BaseDB.OpenDB-class.html#__init__,Method Bio.Mindy.BerkeleyDB.BerkeleyDB.__init__()=Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html#__init__,Method Bio.Mindy.BerkeleyDB.PrimaryNamespace.__init__()=Bio.Mindy.BerkeleyDB.PrimaryNamespace-class.html#__init__,Method Bio.Mindy.BerkeleyDB.SecondaryNamespace.__init__()=Bio.Mindy.BerkeleyDB.SecondaryNamespace-class.html#__init__,Method Bio.Mindy.FlatDB.BaseFlatDB.__init__()=Bio.Mindy.FlatDB.BaseFlatDB-class.html#__init__,Method Bio.Mindy.FlatDB.BisectFile.__init__()=Bio.Mindy.FlatDB.BisectFile-class.html#__init__,Method Bio.Mindy.FlatDB.DiskFlatDB.__init__()=Bio.Mindy.FlatDB.DiskFlatDB-class.html#__init__,Method Bio.Mindy.FlatDB.MemoryFlatDB.__init__()=Bio.Mindy.FlatDB.MemoryFlatDB-class.html#__init__,Method Bio.Mindy.FlatDB.PrimaryNamespace.__init__()=Bio.Mindy.FlatDB.PrimaryNamespace-class.html#__init__,Method Bio.Mindy.FlatDB.PrimaryTable.__init__()=Bio.Mindy.FlatDB.PrimaryTable-class.html#__init__,Method Bio.Mindy.FlatDB.SecondaryNamespace.__init__()=Bio.Mindy.FlatDB.SecondaryNamespace-class.html#__init__,Method Bio.Mindy.FlatDB.SecondaryTable.__init__()=Bio.Mindy.FlatDB.SecondaryTable-class.html#__init__,Method Bio.Mindy.Location.Location.__init__()=Bio.Mindy.Location.Location-class.html#__init__,Method Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer.__init__()=Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html#__init__,Method Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder.__init__()=Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder-class.html#__init__,Method Bio.Mindy.SimpleSeqRecord.FunctionIndexer.__init__()=Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html#__init__,Method Bio.Mindy.SimpleSeqRecord.SimpleIndexer.__init__()=Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html#__init__,Method Bio.Mindy.XPath.GrabXPathNodes.__init__()=Bio.Mindy.XPath.GrabXPathNodes-class.html#__init__,Method Bio.NBRF.Iterator.__init__()=Bio.NBRF.Iterator-class.html#__init__,Method Bio.NBRF.Record.Record.__init__()=Bio.NBRF.Record.Record-class.html#__init__,Method Bio.NBRF.RecordParser.__init__()=Bio.NBRF.RecordParser-class.html#__init__,Method Bio.NBRF._RecordConsumer.__init__()=Bio.NBRF._RecordConsumer-class.html#__init__,Method Bio.NBRF._Scanner.__init__()=Bio.NBRF._Scanner-class.html#__init__,Method Bio.NMR.xpktools.Peaklist.__init__()=Bio.NMR.xpktools.Peaklist-class.html#__init__,Method Bio.NMR.xpktools.XpkEntry.__init__()=Bio.NMR.xpktools.XpkEntry-class.html#__init__,Method Bio.NaiveBayes.NaiveBayes.__init__()=Bio.NaiveBayes.NaiveBayes-class.html#__init__,Method Bio.Ndb.Record.__init__()=Bio.Ndb.Record-class.html#__init__,Method Bio.NetCatch.ExtractUrls.__init__()=Bio.NetCatch.ExtractUrls-class.html#__init__,Method Bio.NetCatch.NetCatch.__init__()=Bio.NetCatch.NetCatch-class.html#__init__,Method Bio.NetCatch.Url.__init__()=Bio.NetCatch.Url-class.html#__init__,Method Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.__init__()=Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#__init__,Method Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer.__init__()=Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html#__init__,Method Bio.NeuralNetwork.BackPropagation.Layer.InputLayer.__init__()=Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html#__init__,Method Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.__init__()=Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#__init__,Method Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork.__init__()=Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#__init__,Method Bio.NeuralNetwork.Gene.Motif.MotifCoder.__init__()=Bio.NeuralNetwork.Gene.Motif.MotifCoder-class.html#__init__,Method Bio.NeuralNetwork.Gene.Motif.MotifFinder.__init__()=Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#__init__,Method Bio.NeuralNetwork.Gene.Pattern.PatternIO.__init__()=Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#__init__,Method Bio.NeuralNetwork.Gene.Pattern.PatternRepository.__init__()=Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness.__init__()=Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder.__init__()=Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness.__init__()=Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator.__init__()=Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.Schema.__init__()=Bio.NeuralNetwork.Gene.Schema.Schema-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.SchemaCoder.__init__()=Bio.NeuralNetwork.Gene.Schema.SchemaCoder-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.SchemaFactory.__init__()=Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.SchemaFinder.__init__()=Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#__init__,Method Bio.NeuralNetwork.Gene.Schema.SimpleFinisher.__init__()=Bio.NeuralNetwork.Gene.Schema.SimpleFinisher-class.html#__init__,Method Bio.NeuralNetwork.Gene.Signature.SignatureCoder.__init__()=Bio.NeuralNetwork.Gene.Signature.SignatureCoder-class.html#__init__,Method Bio.NeuralNetwork.Gene.Signature.SignatureFinder.__init__()=Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#__init__,Method Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop.__init__()=Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html#__init__,Method Bio.NeuralNetwork.Training.ExampleManager.__init__()=Bio.NeuralNetwork.Training.ExampleManager-class.html#__init__,Method Bio.NeuralNetwork.Training.TrainingExample.__init__()=Bio.NeuralNetwork.Training.TrainingExample-class.html#__init__,Method Bio.Nexus.Nexus.Block.__init__()=Bio.Nexus.Nexus.Block-class.html#__init__,Method Bio.Nexus.Nexus.CharBuffer.__init__()=Bio.Nexus.Nexus.CharBuffer-class.html#__init__,Method Bio.Nexus.Nexus.Commandline.__init__()=Bio.Nexus.Nexus.Commandline-class.html#__init__,Method Bio.Nexus.Nexus.Nexus.__init__()=Bio.Nexus.Nexus.Nexus-class.html#__init__,Method Bio.Nexus.Nexus.StepMatrix.__init__()=Bio.Nexus.Nexus.StepMatrix-class.html#__init__,Method Bio.Nexus.Nodes.Chain.__init__()=Bio.Nexus.Nodes.Chain-class.html#__init__,Method Bio.Nexus.Nodes.Node.__init__()=Bio.Nexus.Nodes.Node-class.html#__init__,Method Bio.Nexus.Trees.NodeData.__init__()=Bio.Nexus.Trees.NodeData-class.html#__init__,Method Bio.Nexus.Trees.Tree.__init__()=Bio.Nexus.Trees.Tree-class.html#__init__,Method Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap.__init__()=Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap-class.html#__init__,Method Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__init__()=Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__init__,Method Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap.__init__()=Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html#__init__,Method Bio.PDB.Atom.Atom.__init__()=Bio.PDB.Atom.Atom-class.html#__init__,Method Bio.PDB.Atom.DisorderedAtom.__init__()=Bio.PDB.Atom.DisorderedAtom-class.html#__init__,Method Bio.PDB.Chain.Chain.__init__()=Bio.PDB.Chain.Chain-class.html#__init__,Method Bio.PDB.DSSP'.DSSP.__init__()=Bio.PDB.DSSP%27.DSSP-class.html#__init__,Method Bio.PDB.Dice.ChainSelector.__init__()=Bio.PDB.Dice.ChainSelector-class.html#__init__,Method Bio.PDB.Entity.DisorderedEntityWrapper.__init__()=Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__init__,Method Bio.PDB.Entity.Entity.__init__()=Bio.PDB.Entity.Entity-class.html#__init__,Method Bio.PDB.FragmentMapper'.Fragment.__init__()=Bio.PDB.FragmentMapper%27.Fragment-class.html#__init__,Method Bio.PDB.FragmentMapper'.FragmentMapper.__init__()=Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#__init__,Method Bio.PDB.HSExposure.ExposureCN.__init__()=Bio.PDB.HSExposure.ExposureCN-class.html#__init__,Method Bio.PDB.HSExposure.HSExposureCA.__init__()=Bio.PDB.HSExposure.HSExposureCA-class.html#__init__,Method Bio.PDB.HSExposure.HSExposureCB.__init__()=Bio.PDB.HSExposure.HSExposureCB-class.html#__init__,Method Bio.PDB.HSExposure._AbstractHSExposure.__init__()=Bio.PDB.HSExposure._AbstractHSExposure-class.html#__init__,Method Bio.PDB.MMCIF2Dict.MMCIF2Dict.__init__()=Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#__init__,Method Bio.PDB.Model.Model.__init__()=Bio.PDB.Model.Model-class.html#__init__,Method Bio.PDB.NACCESS.NACCESS.__init__()=Bio.PDB.NACCESS.NACCESS-class.html#__init__,Method Bio.PDB.NACCESS.NACCESS_atomic.__init__()=Bio.PDB.NACCESS.NACCESS_atomic-class.html#__init__,Method Bio.PDB.NeighborSearch.NeighborSearch.__init__()=Bio.PDB.NeighborSearch.NeighborSearch-class.html#__init__,Method Bio.PDB.PDBIO'.PDBIO.__init__()=Bio.PDB.PDBIO%27.PDBIO-class.html#__init__,Method Bio.PDB.PDBList'.PDBList.__init__()=Bio.PDB.PDBList%27.PDBList-class.html#__init__,Method Bio.PDB.PDBParser'.PDBParser.__init__()=Bio.PDB.PDBParser%27.PDBParser-class.html#__init__,Method Bio.PDB.PSEA.PSEA.__init__()=Bio.PDB.PSEA.PSEA-class.html#__init__,Method Bio.PDB.Polypeptide.CaPPBuilder.__init__()=Bio.PDB.Polypeptide.CaPPBuilder-class.html#__init__,Method Bio.PDB.Polypeptide.PPBuilder.__init__()=Bio.PDB.Polypeptide.PPBuilder-class.html#__init__,Method Bio.PDB.Polypeptide._PPBuilder.__init__()=Bio.PDB.Polypeptide._PPBuilder-class.html#__init__,Method Bio.PDB.Residue.DisorderedResidue.__init__()=Bio.PDB.Residue.DisorderedResidue-class.html#__init__,Method Bio.PDB.Residue.Residue.__init__()=Bio.PDB.Residue.Residue-class.html#__init__,Method Bio.PDB.ResidueDepth'.ResidueDepth.__init__()=Bio.PDB.ResidueDepth%27.ResidueDepth-class.html#__init__,Method Bio.PDB.Structure.Structure.__init__()=Bio.PDB.Structure.Structure-class.html#__init__,Method Bio.PDB.StructureAlignment'.StructureAlignment.__init__()=Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#__init__,Method Bio.PDB.StructureBuilder.StructureBuilder.__init__()=Bio.PDB.StructureBuilder.StructureBuilder-class.html#__init__,Method Bio.PDB.Superimposer'.Superimposer.__init__()=Bio.PDB.Superimposer%27.Superimposer-class.html#__init__,Method Bio.PDB.Vector'.Vector.__init__()=Bio.PDB.Vector%27.Vector-class.html#__init__,Method Bio.ParserSupport.EventGenerator.__init__()=Bio.ParserSupport.EventGenerator-class.html#__init__,Method Bio.ParserSupport.SGMLStrippingConsumer.__init__()=Bio.ParserSupport.SGMLStrippingConsumer-class.html#__init__,Method Bio.ParserSupport.TaggingConsumer.__init__()=Bio.ParserSupport.TaggingConsumer-class.html#__init__,Method Bio.Parsers.spark.GenericASTBuilder.__init__()=Bio.Parsers.spark.GenericASTBuilder-class.html#__init__,Method Bio.Parsers.spark.GenericASTMatcher.__init__()=Bio.Parsers.spark.GenericASTMatcher-class.html#__init__,Method Bio.Parsers.spark.GenericASTTraversal.__init__()=Bio.Parsers.spark.GenericASTTraversal-class.html#__init__,Method Bio.Parsers.spark.GenericParser.__init__()=Bio.Parsers.spark.GenericParser-class.html#__init__,Method Bio.Parsers.spark.GenericScanner.__init__()=Bio.Parsers.spark.GenericScanner-class.html#__init__,Method Bio.Pathway.Network.__init__()=Bio.Pathway.Network-class.html#__init__,Method Bio.Pathway.Reaction.__init__()=Bio.Pathway.Reaction-class.html#__init__,Method Bio.Pathway.Rep.Graph.Graph.__init__()=Bio.Pathway.Rep.Graph.Graph-class.html#__init__,Method Bio.Pathway.Rep.HashSet.HashSet.__init__()=Bio.Pathway.Rep.HashSet.HashSet-class.html#__init__,Method Bio.Pathway.Rep.MultiGraph.MultiGraph.__init__()=Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__init__,Method Bio.Pathway.System.__init__()=Bio.Pathway.System-class.html#__init__,Method Bio.PopGen.Async.Async.__init__()=Bio.PopGen.Async.Async-class.html#__init__,Method Bio.PopGen.Async.DirectoryRetriever.__init__()=Bio.PopGen.Async.DirectoryRetriever-class.html#__init__,Method Bio.PopGen.Async.FileRetriever.__init__()=Bio.PopGen.Async.FileRetriever-class.html#__init__,Method Bio.PopGen.Async.Local.Local.__init__()=Bio.PopGen.Async.Local.Local-class.html#__init__,Method Bio.PopGen.FDist.Async.FDistAsync.__init__()=Bio.PopGen.FDist.Async.FDistAsync-class.html#__init__,Method Bio.PopGen.FDist.Async.SplitFDist.__init__()=Bio.PopGen.FDist.Async.SplitFDist-class.html#__init__,Method Bio.PopGen.FDist.Controller.FDistController.__init__()=Bio.PopGen.FDist.Controller.FDistController-class.html#__init__,Method Bio.PopGen.FDist.Record.__init__()=Bio.PopGen.FDist.Record-class.html#__init__,Method Bio.PopGen.FDist.RecordParser.__init__()=Bio.PopGen.FDist.RecordParser-class.html#__init__,Method Bio.PopGen.FDist._RecordConsumer.__init__()=Bio.PopGen.FDist._RecordConsumer-class.html#__init__,Method Bio.PopGen.GenePop.Record.__init__()=Bio.PopGen.GenePop.Record-class.html#__init__,Method Bio.PopGen.GenePop.RecordParser.__init__()=Bio.PopGen.GenePop.RecordParser-class.html#__init__,Method Bio.PopGen.GenePop._RecordConsumer.__init__()=Bio.PopGen.GenePop._RecordConsumer-class.html#__init__,Method Bio.PopGen.SimCoal.Async.SimCoalCache.__init__()=Bio.PopGen.SimCoal.Async.SimCoalCache-class.html#__init__,Method Bio.PopGen.SimCoal.Cache.SimCoalCache.__init__()=Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#__init__,Method Bio.PopGen.SimCoal.Controller.SimCoalController.__init__()=Bio.PopGen.SimCoal.Controller.SimCoalController-class.html#__init__,Method Bio.PropertyManager.PropertyManager.__init__()=Bio.PropertyManager.PropertyManager-class.html#__init__,Method Bio.Prosite.Dictionary.__init__()=Bio.Prosite.Dictionary-class.html#__init__,Method Bio.Prosite.ExPASyDictionary.__init__()=Bio.Prosite.ExPASyDictionary-class.html#__init__,Method Bio.Prosite.Iterator.__init__()=Bio.Prosite.Iterator-class.html#__init__,Method Bio.Prosite.Pattern.Prosite.__init__()=Bio.Prosite.Pattern.Prosite-class.html#__init__,Method Bio.Prosite.Pattern.PrositeMatch.__init__()=Bio.Prosite.Pattern.PrositeMatch-class.html#__init__,Method Bio.Prosite.Pattern.PrositeTerm.__init__()=Bio.Prosite.Pattern.PrositeTerm-class.html#__init__,Method Bio.Prosite.PatternHit.__init__()=Bio.Prosite.PatternHit-class.html#__init__,Method Bio.Prosite.Prodoc.Dictionary.__init__()=Bio.Prosite.Prodoc.Dictionary-class.html#__init__,Method Bio.Prosite.Prodoc.ExPASyDictionary.__init__()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#__init__,Method Bio.Prosite.Prodoc.Iterator.__init__()=Bio.Prosite.Prodoc.Iterator-class.html#__init__,Method Bio.Prosite.Prodoc.Record.__init__()=Bio.Prosite.Prodoc.Record-class.html#__init__,Method Bio.Prosite.Prodoc.RecordParser.__init__()=Bio.Prosite.Prodoc.RecordParser-class.html#__init__,Method Bio.Prosite.Prodoc.Reference.__init__()=Bio.Prosite.Prodoc.Reference-class.html#__init__,Method Bio.Prosite.Prodoc._RecordConsumer.__init__()=Bio.Prosite.Prodoc._RecordConsumer-class.html#__init__,Method Bio.Prosite.Record.__init__()=Bio.Prosite.Record-class.html#__init__,Method Bio.Prosite.RecordParser.__init__()=Bio.Prosite.RecordParser-class.html#__init__,Method Bio.Prosite._RecordConsumer.__init__()=Bio.Prosite._RecordConsumer-class.html#__init__,Method Bio.PubMed.Dictionary.__init__()=Bio.PubMed.Dictionary-class.html#__init__,Method Bio.Rebase.Dictionary.__init__()=Bio.Rebase.Dictionary-class.html#__init__,Method Bio.Rebase.Iterator.__init__()=Bio.Rebase.Iterator-class.html#__init__,Method Bio.Rebase.Record.__init__()=Bio.Rebase.Record-class.html#__init__,Method Bio.Rebase.RecordParser.__init__()=Bio.Rebase.RecordParser-class.html#__init__,Method Bio.Rebase._RecordConsumer.__init__()=Bio.Rebase._RecordConsumer-class.html#__init__,Method Bio.Restriction.PrintFormat.PrintFormat.__init__()=Bio.Restriction.PrintFormat.PrintFormat-class.html#__init__,Method Bio.Restriction.Restriction.Analysis.__init__()=Bio.Restriction.Restriction.Analysis-class.html#__init__,Method Bio.Restriction.Restriction.FormattedSeq.__init__()=Bio.Restriction.Restriction.FormattedSeq-class.html#__init__,Method Bio.Restriction.Restriction.RestrictionBatch.__init__()=Bio.Restriction.Restriction.RestrictionBatch-class.html#__init__,Method Bio.Restriction.Restriction.RestrictionType.__init__()=Bio.Restriction.Restriction.RestrictionType-class.html#__init__,Method Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.__init__()=Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#__init__,Method Bio.Restriction._Update.RestrictionCompiler.TypeCompiler.__init__()=Bio.Restriction._Update.RestrictionCompiler.TypeCompiler-class.html#__init__,Method Bio.Restriction._Update.RestrictionCompiler.newenzyme.__init__()=Bio.Restriction._Update.RestrictionCompiler.newenzyme-class.html#__init__,Method Bio.Restriction._Update.Update.ConnectionError.__init__()=Bio.Restriction._Update.Update.ConnectionError-class.html#__init__,Method Bio.Restriction._Update.Update.FtpNameError.__init__()=Bio.Restriction._Update.Update.FtpNameError-class.html#__init__,Method Bio.Restriction._Update.Update.FtpPasswordError.__init__()=Bio.Restriction._Update.Update.FtpPasswordError-class.html#__init__,Method Bio.Restriction._Update.Update.RebaseUpdate.__init__()=Bio.Restriction._Update.Update.RebaseUpdate-class.html#__init__,Method Bio.SCOP.Astral.__init__()=Bio.SCOP.Astral-class.html#__init__,Method Bio.SCOP.Cla.Index.__init__()=Bio.SCOP.Cla.Index-class.html#__init__,Method Bio.SCOP.Cla.Iterator.__init__()=Bio.SCOP.Cla.Iterator-class.html#__init__,Method Bio.SCOP.Cla.Parser.__init__()=Bio.SCOP.Cla.Parser-class.html#__init__,Method Bio.SCOP.Cla.Record.__init__()=Bio.SCOP.Cla.Record-class.html#__init__,Method Bio.SCOP.Des.Iterator.__init__()=Bio.SCOP.Des.Iterator-class.html#__init__,Method Bio.SCOP.Des.Parser.__init__()=Bio.SCOP.Des.Parser-class.html#__init__,Method Bio.SCOP.Des.Record.__init__()=Bio.SCOP.Des.Record-class.html#__init__,Method Bio.SCOP.Dom.Iterator.__init__()=Bio.SCOP.Dom.Iterator-class.html#__init__,Method Bio.SCOP.Dom.Record.__init__()=Bio.SCOP.Dom.Record-class.html#__init__,Method Bio.SCOP.Domain.__init__()=Bio.SCOP.Domain-class.html#__init__,Method Bio.SCOP.FileIndex.FileIndex.__init__()=Bio.SCOP.FileIndex.FileIndex-class.html#__init__,Method Bio.SCOP.FileIndex.defaultdict.__init__()=Bio.SCOP.FileIndex.defaultdict-class.html#__init__,Method Bio.SCOP.Hie.Iterator.__init__()=Bio.SCOP.Hie.Iterator-class.html#__init__,Method Bio.SCOP.Hie.Parser.__init__()=Bio.SCOP.Hie.Parser-class.html#__init__,Method Bio.SCOP.Hie.Record.__init__()=Bio.SCOP.Hie.Record-class.html#__init__,Method Bio.SCOP.Node.__init__()=Bio.SCOP.Node-class.html#__init__,Method Bio.SCOP.Raf.Iterator.__init__()=Bio.SCOP.Raf.Iterator-class.html#__init__,Method Bio.SCOP.Raf.Parser.__init__()=Bio.SCOP.Raf.Parser-class.html#__init__,Method Bio.SCOP.Raf.Res.__init__()=Bio.SCOP.Raf.Res-class.html#__init__,Method Bio.SCOP.Raf.SeqMap.__init__()=Bio.SCOP.Raf.SeqMap-class.html#__init__,Method Bio.SCOP.Raf.SeqMapIndex.__init__()=Bio.SCOP.Raf.SeqMapIndex-class.html#__init__,Method Bio.SCOP.Residues'.Residues.__init__()=Bio.SCOP.Residues%27.Residues-class.html#__init__,Method Bio.SCOP.Scop.__init__()=Bio.SCOP.Scop-class.html#__init__,Method Bio.SGMLExtractor.SGMLExtractor.LocalParser.__init__()=Bio.SGMLExtractor.SGMLExtractor.LocalParser-class.html#__init__,Method Bio.SGMLExtractor.SGMLExtractor.__init__()=Bio.SGMLExtractor.SGMLExtractor-class.html#__init__,Method Bio.SGMLExtractor.SGMLExtractorHandle.__init__()=Bio.SGMLExtractor.SGMLExtractorHandle-class.html#__init__,Method Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.__init__()=Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#__init__,Method Bio.Saf.Iterator.__init__()=Bio.Saf.Iterator-class.html#__init__,Method Bio.Saf.Record.Record.__init__()=Bio.Saf.Record.Record-class.html#__init__,Method Bio.Saf.RecordParser.__init__()=Bio.Saf.RecordParser-class.html#__init__,Method Bio.Saf._RecordConsumer.__init__()=Bio.Saf._RecordConsumer-class.html#__init__,Method Bio.Saf._Scanner.__init__()=Bio.Saf._Scanner-class.html#__init__,Method Bio.Search.Algorithm.__init__()=Bio.Search.Algorithm-class.html#__init__,Method Bio.Search.Database.__init__()=Bio.Search.Database-class.html#__init__,Method Bio.Search.HSP.__init__()=Bio.Search.HSP-class.html#__init__,Method Bio.Search.HSPSeq.__init__()=Bio.Search.HSPSeq-class.html#__init__,Method Bio.Search.Hit.__init__()=Bio.Search.Hit-class.html#__init__,Method Bio.Search.HomologySeq.__init__()=Bio.Search.HomologySeq-class.html#__init__,Method Bio.Search.Query.__init__()=Bio.Search.Query-class.html#__init__,Method Bio.Search.Search.__init__()=Bio.Search.Search-class.html#__init__,Method Bio.Search.TableInfo.__init__()=Bio.Search.TableInfo-class.html#__init__,Method Bio.Search._SeqLength.__init__()=Bio.Search._SeqLength-class.html#__init__,Method Bio.Seq.MutableSeq.__init__()=Bio.Seq.MutableSeq-class.html#__init__,Method Bio.Seq.Seq.__init__()=Bio.Seq.Seq-class.html#__init__,Method Bio.SeqFeature.AbstractPosition.__init__()=Bio.SeqFeature.AbstractPosition-class.html#__init__,Method Bio.SeqFeature.AfterPosition.__init__()=Bio.SeqFeature.AfterPosition-class.html#__init__,Method Bio.SeqFeature.BeforePosition.__init__()=Bio.SeqFeature.BeforePosition-class.html#__init__,Method Bio.SeqFeature.BetweenPosition.__init__()=Bio.SeqFeature.BetweenPosition-class.html#__init__,Method Bio.SeqFeature.ExactPosition.__init__()=Bio.SeqFeature.ExactPosition-class.html#__init__,Method Bio.SeqFeature.FeatureLocation.__init__()=Bio.SeqFeature.FeatureLocation-class.html#__init__,Method Bio.SeqFeature.OneOfPosition.__init__()=Bio.SeqFeature.OneOfPosition-class.html#__init__,Method Bio.SeqFeature.PositionGap.__init__()=Bio.SeqFeature.PositionGap-class.html#__init__,Method Bio.SeqFeature.Reference.__init__()=Bio.SeqFeature.Reference-class.html#__init__,Method Bio.SeqFeature.SeqFeature.__init__()=Bio.SeqFeature.SeqFeature-class.html#__init__,Method Bio.SeqFeature.WithinPosition.__init__()=Bio.SeqFeature.WithinPosition-class.html#__init__,Method Bio.SeqIO.ClustalIO.ClustalWriter.__init__()=Bio.SeqIO.ClustalIO.ClustalWriter-class.html#__init__,Method Bio.SeqIO.FastaIO.FastaWriter.__init__()=Bio.SeqIO.FastaIO.FastaWriter-class.html#__init__,Method Bio.SeqIO.Interfaces.InterlacedSequenceIterator.__init__()=Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#__init__,Method Bio.SeqIO.Interfaces.SequenceIterator.__init__()=Bio.SeqIO.Interfaces.SequenceIterator-class.html#__init__,Method Bio.SeqIO.Interfaces.SequenceWriter.__init__()=Bio.SeqIO.Interfaces.SequenceWriter-class.html#__init__,Method Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__()=Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__,Method Bio.SeqIO.PhylipIO.PhylipWriter.__init__()=Bio.SeqIO.PhylipIO.PhylipWriter-class.html#__init__,Method Bio.SeqIO.StockholmIO.StockholmIterator.__init__()=Bio.SeqIO.StockholmIO.StockholmIterator-class.html#__init__,Method Bio.SeqIO.StockholmIO.StockholmWriter.__init__()=Bio.SeqIO.StockholmIO.StockholmWriter-class.html#__init__,Method Bio.SeqRecord.SeqRecord.__init__()=Bio.SeqRecord.SeqRecord-class.html#__init__,Method Bio.SeqUtils.CodonUsage.CodonAdaptationIndex.__init__()=Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#__init__,Method Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint.__init__()=Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html#__init__,Method Bio.SeqUtils.MissingTable.__init__()=Bio.SeqUtils.MissingTable-class.html#__init__,Method Bio.SeqUtils.ProtParam.ProteinAnalysis.__init__()=Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#__init__,Method Bio.Sequencing.Ace.ACEFileRecord.__init__()=Bio.Sequencing.Ace.ACEFileRecord-class.html#__init__,Method Bio.Sequencing.Ace.ACEParser.__init__()=Bio.Sequencing.Ace.ACEParser-class.html#__init__,Method Bio.Sequencing.Ace.Contig.__init__()=Bio.Sequencing.Ace.Contig-class.html#__init__,Method Bio.Sequencing.Ace.Iterator.__init__()=Bio.Sequencing.Ace.Iterator-class.html#__init__,Method Bio.Sequencing.Ace.Reads.__init__()=Bio.Sequencing.Ace.Reads-class.html#__init__,Method Bio.Sequencing.Ace.RecordParser.__init__()=Bio.Sequencing.Ace.RecordParser-class.html#__init__,Method Bio.Sequencing.Ace._RecordConsumer.__init__()=Bio.Sequencing.Ace._RecordConsumer-class.html#__init__,Method Bio.Sequencing.Ace.af.__init__()=Bio.Sequencing.Ace.af-class.html#__init__,Method Bio.Sequencing.Ace.bs.__init__()=Bio.Sequencing.Ace.bs-class.html#__init__,Method Bio.Sequencing.Ace.ct.__init__()=Bio.Sequencing.Ace.ct-class.html#__init__,Method Bio.Sequencing.Ace.ds.__init__()=Bio.Sequencing.Ace.ds-class.html#__init__,Method Bio.Sequencing.Ace.qa.__init__()=Bio.Sequencing.Ace.qa-class.html#__init__,Method Bio.Sequencing.Ace.rd.__init__()=Bio.Sequencing.Ace.rd-class.html#__init__,Method Bio.Sequencing.Ace.rt.__init__()=Bio.Sequencing.Ace.rt-class.html#__init__,Method Bio.Sequencing.Ace.wa.__init__()=Bio.Sequencing.Ace.wa-class.html#__init__,Method Bio.Sequencing.Ace.wr.__init__()=Bio.Sequencing.Ace.wr-class.html#__init__,Method Bio.Sequencing.Phd.Iterator.__init__()=Bio.Sequencing.Phd.Iterator-class.html#__init__,Method Bio.Sequencing.Phd.Record.__init__()=Bio.Sequencing.Phd.Record-class.html#__init__,Method Bio.Sequencing.Phd.RecordParser.__init__()=Bio.Sequencing.Phd.RecordParser-class.html#__init__,Method Bio.Sequencing.Phd._RecordConsumer.__init__()=Bio.Sequencing.Phd._RecordConsumer-class.html#__init__,Method Bio.Std.StdTerm.__init__()=Bio.Std.StdTerm-class.html#__init__,Method Bio.StdHandler.ConvertDispatchHandler.__init__()=Bio.StdHandler.ConvertDispatchHandler-class.html#__init__,Method Bio.StdHandler.ConvertHandler.__init__()=Bio.StdHandler.ConvertHandler-class.html#__init__,Method Bio.StdHandler.Feature.__init__()=Bio.StdHandler.Feature-class.html#__init__,Method Bio.StdHandler.Handle_dbxref.__init__()=Bio.StdHandler.Handle_dbxref-class.html#__init__,Method Bio.StdHandler.Handle_feature_location.__init__()=Bio.StdHandler.Handle_feature_location-class.html#__init__,Method Bio.StdHandler.Handle_feature_qualifier.__init__()=Bio.StdHandler.Handle_feature_qualifier-class.html#__init__,Method Bio.StdHandler.Handle_features.__init__()=Bio.StdHandler.Handle_features-class.html#__init__,Method Bio.StdHandler.Handle_hsp.__init__()=Bio.StdHandler.Handle_hsp-class.html#__init__,Method Bio.StdHandler.RecognizeHandler.__init__()=Bio.StdHandler.RecognizeHandler-class.html#__init__,Method Bio.SubsMat.FreqTable.FreqTable.__init__()=Bio.SubsMat.FreqTable.FreqTable-class.html#__init__,Method Bio.SubsMat.SeqMat.__init__()=Bio.SubsMat.SeqMat-class.html#__init__,Method Bio.SwissProt.KeyWList.ListParser.__init__()=Bio.SwissProt.KeyWList.ListParser-class.html#__init__,Method Bio.SwissProt.KeyWList.Record.__init__()=Bio.SwissProt.KeyWList.Record-class.html#__init__,Method Bio.SwissProt.KeyWList._ListConsumer.__init__()=Bio.SwissProt.KeyWList._ListConsumer-class.html#__init__,Method Bio.SwissProt.KeyWList._Scanner.__init__()=Bio.SwissProt.KeyWList._Scanner-class.html#__init__,Method Bio.SwissProt.SProt.Dictionary.__init__()=Bio.SwissProt.SProt.Dictionary-class.html#__init__,Method Bio.SwissProt.SProt.ExPASyDictionary.__init__()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#__init__,Method Bio.SwissProt.SProt.Iterator.__init__()=Bio.SwissProt.SProt.Iterator-class.html#__init__,Method Bio.SwissProt.SProt.Record.__init__()=Bio.SwissProt.SProt.Record-class.html#__init__,Method Bio.SwissProt.SProt.RecordParser.__init__()=Bio.SwissProt.SProt.RecordParser-class.html#__init__,Method Bio.SwissProt.SProt.Reference.__init__()=Bio.SwissProt.SProt.Reference-class.html#__init__,Method Bio.SwissProt.SProt.SequenceParser.__init__()=Bio.SwissProt.SProt.SequenceParser-class.html#__init__,Method Bio.SwissProt.SProt._RecordConsumer.__init__()=Bio.SwissProt.SProt._RecordConsumer-class.html#__init__,Method Bio.SwissProt.SProt._SequenceConsumer.__init__()=Bio.SwissProt.SProt._SequenceConsumer-class.html#__init__,Method Bio.Transcribe.Transcribe.__init__()=Bio.Transcribe.Transcribe-class.html#__init__,Method Bio.Translate.Translator.__init__()=Bio.Translate.Translator-class.html#__init__,Method Bio.UniGene.Iterator.__init__()=Bio.UniGene.Iterator-class.html#__init__,Method Bio.UniGene.RecordParser.__init__()=Bio.UniGene.RecordParser-class.html#__init__,Method Bio.UniGene.UnigeneProtsimRecord.__init__()=Bio.UniGene.UnigeneProtsimRecord-class.html#__init__,Method Bio.UniGene.UnigeneRecord.__init__()=Bio.UniGene.UnigeneRecord-class.html#__init__,Method Bio.UniGene.UnigeneSTSRecord.__init__()=Bio.UniGene.UnigeneSTSRecord-class.html#__init__,Method Bio.UniGene.UnigeneSequenceRecord.__init__()=Bio.UniGene.UnigeneSequenceRecord-class.html#__init__,Method Bio.UniGene._RecordConsumer.__init__()=Bio.UniGene._RecordConsumer-class.html#__init__,Method Bio.WWW.RequestLimiter.__init__()=Bio.WWW.RequestLimiter-class.html#__init__,Method Bio.Wise.dnal.Statistics.__init__()=Bio.Wise.dnal.Statistics-class.html#__init__,Method Bio.Wise.psw.AlignmentColumn.__init__()=Bio.Wise.psw.AlignmentColumn-class.html#__init__,Method Bio.Wise.psw.ColumnUnit.__init__()=Bio.Wise.psw.ColumnUnit-class.html#__init__,Method Bio.Writer.Writer.__init__()=Bio.Writer.Writer-class.html#__init__,Method Bio.biblio.Biblio.__init__()=Bio.biblio.Biblio-class.html#__init__,Method Bio.biblio.BiblioCollection.__init__()=Bio.biblio.BiblioCollection-class.html#__init__,Method Bio.builders.Search.search.BuildSearch.__init__()=Bio.builders.Search.search.BuildSearch-class.html#__init__,Method Bio.builders.SeqRecord.sequence.BuildSeqRecord.__init__()=Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#__init__,Method Bio.config.DBRegistry.BioCorbaDB.__init__()=Bio.config.DBRegistry.BioCorbaDB-class.html#__init__,Method Bio.config.DBRegistry.BioSQLDB.__init__()=Bio.config.DBRegistry.BioSQLDB-class.html#__init__,Method Bio.config.DBRegistry.CGIDB.__init__()=Bio.config.DBRegistry.CGIDB-class.html#__init__,Method Bio.config.DBRegistry.DBGroup.__init__()=Bio.config.DBRegistry.DBGroup-class.html#__init__,Method Bio.config.DBRegistry.DBObject.__init__()=Bio.config.DBRegistry.DBObject-class.html#__init__,Method Bio.config.DBRegistry.DBRegistry.__init__()=Bio.config.DBRegistry.DBRegistry-class.html#__init__,Method Bio.config.DBRegistry.EUtilsDB.__init__()=Bio.config.DBRegistry.EUtilsDB-class.html#__init__,Method Bio.config.DBRegistry.IndexedFileDB.__init__()=Bio.config.DBRegistry.IndexedFileDB-class.html#__init__,Method Bio.config.FormatRegistry.FormatGroup.__init__()=Bio.config.FormatRegistry.FormatGroup-class.html#__init__,Method Bio.config.FormatRegistry.FormatObject.__init__()=Bio.config.FormatRegistry.FormatObject-class.html#__init__,Method Bio.config.FormatRegistry.FormatRegistry.__init__()=Bio.config.FormatRegistry.FormatRegistry-class.html#__init__,Method Bio.config.Registry.RegisterableGroup.__init__()=Bio.config.Registry.RegisterableGroup-class.html#__init__,Method Bio.config.Registry.RegisterableObject.__init__()=Bio.config.Registry.RegisterableObject-class.html#__init__,Method Bio.config.Registry.Registry.__init__()=Bio.config.Registry.Registry-class.html#__init__,Method Bio.config.SeqDBRegistry.SeqDBRegistry.__init__()=Bio.config.SeqDBRegistry.SeqDBRegistry-class.html#__init__,Method Bio.config._stanzaformat.Stanza.__init__()=Bio.config._stanzaformat.Stanza-class.html#__init__,Method Bio.config._stanzaformat.StanzaFormat.__init__()=Bio.config._stanzaformat.StanzaFormat-class.html#__init__,Method Bio.config._support.make_cached_expression.__init__()=Bio.config._support.make_cached_expression-class.html#__init__,Method Bio.config._support.make_rate_limited_function.__init__()=Bio.config._support.make_rate_limited_function-class.html#__init__,Method Bio.kNN.kNN.__init__()=Bio.kNN.kNN-class.html#__init__,Method Bio.pairwise2.affine_penalty.__init__()=Bio.pairwise2.affine_penalty-class.html#__init__,Method Bio.pairwise2.dictionary_match.__init__()=Bio.pairwise2.dictionary_match-class.html#__init__,Method Bio.pairwise2.identity_match.__init__()=Bio.pairwise2.identity_match-class.html#__init__,Method Bio.writers.SeqRecord.embl.WriteEmbl.__init__()=Bio.writers.SeqRecord.embl.WriteEmbl-class.html#__init__,Method Bio.writers.SeqRecord.fasta.WriteFasta.__init__()=Bio.writers.SeqRecord.fasta.WriteFasta-class.html#__init__,Method BioSQL.BioSeq.DBSeq.__init__()=BioSQL.BioSeq.DBSeq-class.html#__init__,Method BioSQL.BioSeq.DBSeqRecord.__init__()=BioSQL.BioSeq.DBSeqRecord-class.html#__init__,Method BioSQL.BioSeqDatabase.Adaptor.__init__()=BioSQL.BioSeqDatabase.Adaptor-class.html#__init__,Method BioSQL.BioSeqDatabase.BioSeqDatabase.__init__()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#__init__,Method BioSQL.BioSeqDatabase.DBServer.__init__()=BioSQL.BioSeqDatabase.DBServer-class.html#__init__,Method BioSQL.DBUtils.Generic_dbutils.__init__()=BioSQL.DBUtils.Generic_dbutils-class.html#__init__,Method BioSQL.Loader.DatabaseLoader.__init__()=BioSQL.Loader.DatabaseLoader-class.html#__init__,Method BioSQL.Loader.DatabaseRemover.__init__()=BioSQL.Loader.DatabaseRemover-class.html#__init__,Method Martel.Dispatch.Callback.__init__()=Martel.Dispatch.Callback-class.html#__init__,Method Martel.Dispatch.DispatchHandler.__init__()=Martel.Dispatch.DispatchHandler-class.html#__init__,Method Martel.Dispatch.Dispatcher.__init__()=Martel.Dispatch.Dispatcher-class.html#__init__,Method Martel.Dispatch.Multicall.__init__()=Martel.Dispatch.Multicall-class.html#__init__,Method Martel.Dispatch.RemapEnd.__init__()=Martel.Dispatch.RemapEnd-class.html#__init__,Method Martel.Dispatch.RemapStart.__init__()=Martel.Dispatch.RemapStart-class.html#__init__,Method Martel.Expression.Alt.__init__()=Martel.Expression.Alt-class.html#__init__,Method Martel.Expression.Any.__init__()=Martel.Expression.Any-class.html#__init__,Method Martel.Expression.Assert.__init__()=Martel.Expression.Assert-class.html#__init__,Method Martel.Expression.Debug.__init__()=Martel.Expression.Debug-class.html#__init__,Method Martel.Expression.FastFeature.__init__()=Martel.Expression.FastFeature-class.html#__init__,Method Martel.Expression.Group.__init__()=Martel.Expression.Group-class.html#__init__,Method Martel.Expression.GroupRef.__init__()=Martel.Expression.GroupRef-class.html#__init__,Method Martel.Expression.HeaderFooter.__init__()=Martel.Expression.HeaderFooter-class.html#__init__,Method Martel.Expression.Literal.__init__()=Martel.Expression.Literal-class.html#__init__,Method Martel.Expression.MaxRepeat.__init__()=Martel.Expression.MaxRepeat-class.html#__init__,Method Martel.Expression.NullOp.__init__()=Martel.Expression.NullOp-class.html#__init__,Method Martel.Expression.ParseRecords.__init__()=Martel.Expression.ParseRecords-class.html#__init__,Method Martel.Expression.PassThrough.__init__()=Martel.Expression.PassThrough-class.html#__init__,Method Martel.Expression.Seq.__init__()=Martel.Expression.Seq-class.html#__init__,Method Martel.Expression.Str.__init__()=Martel.Expression.Str-class.html#__init__,Method Martel.Generate.CheckAssert.__init__()=Martel.Generate.CheckAssert-class.html#__init__,Method Martel.Generate.CheckAssertNot.__init__()=Martel.Generate.CheckAssertNot-class.html#__init__,Method Martel.Generate.CheckGroupRef.__init__()=Martel.Generate.CheckGroupRef-class.html#__init__,Method Martel.Generate.GeneratorState.__init__()=Martel.Generate.GeneratorState-class.html#__init__,Method Martel.Generate.HandleRepeatCount.__init__()=Martel.Generate.HandleRepeatCount-class.html#__init__,Method Martel.Generate.SetGroupValue.__init__()=Martel.Generate.SetGroupValue-class.html#__init__,Method Martel.Generate._call_call.__init__()=Martel.Generate._call_call-class.html#__init__,Method Martel.Generate._call_calltag.__init__()=Martel.Generate._call_calltag-class.html#__init__,Method Martel.Generate.print_debug.__init__()=Martel.Generate.print_debug-class.html#__init__,Method Martel.Generate.print_info.__init__()=Martel.Generate.print_info-class.html#__init__,Method Martel.IterParser.IterHeaderFooter.__init__()=Martel.IterParser.IterHeaderFooter-class.html#__init__,Method Martel.IterParser.IterRecords.__init__()=Martel.IterParser.IterRecords-class.html#__init__,Method Martel.Iterator.EventStream.__init__()=Martel.Iterator.EventStream-class.html#__init__,Method Martel.Iterator.HeaderFooterEventStream.__init__()=Martel.Iterator.HeaderFooterEventStream-class.html#__init__,Method Martel.Iterator.Iterate.__init__()=Martel.Iterator.Iterate-class.html#__init__,Method Martel.Iterator.Iterator.__init__()=Martel.Iterator.Iterator-class.html#__init__,Method Martel.Iterator.IteratorHeaderFooter.__init__()=Martel.Iterator.IteratorHeaderFooter-class.html#__init__,Method Martel.Iterator.IteratorRecords.__init__()=Martel.Iterator.IteratorRecords-class.html#__init__,Method Martel.Iterator.RecordEventStream.__init__()=Martel.Iterator.RecordEventStream-class.html#__init__,Method Martel.Iterator.StoreEvents.__init__()=Martel.Iterator.StoreEvents-class.html#__init__,Method Martel.LAX.ElementInfo.__init__()=Martel.LAX.ElementInfo-class.html#__init__,Method Martel.LAX.LAX.__init__()=Martel.LAX.LAX-class.html#__init__,Method Martel.Parser.HeaderFooterParser.__init__()=Martel.Parser.HeaderFooterParser-class.html#__init__,Method Martel.Parser.Parser.__init__()=Martel.Parser.Parser-class.html#__init__,Method Martel.Parser.ParserIncompleteException.__init__()=Martel.Parser.ParserIncompleteException-class.html#__init__,Method Martel.Parser.ParserPositionException.__init__()=Martel.Parser.ParserPositionException-class.html#__init__,Method Martel.Parser.RecordParser.__init__()=Martel.Parser.RecordParser-class.html#__init__,Method Martel.RecordReader.CountLines.__init__()=Martel.RecordReader.CountLines-class.html#__init__,Method Martel.RecordReader.EndsWith.__init__()=Martel.RecordReader.EndsWith-class.html#__init__,Method Martel.RecordReader.Everything.__init__()=Martel.RecordReader.Everything-class.html#__init__,Method Martel.RecordReader.Nothing.__init__()=Martel.RecordReader.Nothing-class.html#__init__,Method Martel.RecordReader.RecordReader.__init__()=Martel.RecordReader.RecordReader-class.html#__init__,Method Martel.RecordReader.StartsWith.__init__()=Martel.RecordReader.StartsWith-class.html#__init__,Method Martel.RecordReader.Until.__init__()=Martel.RecordReader.Until-class.html#__init__,Method Martel.convert_re.GroupNames.__init__()=Martel.convert_re.GroupNames-class.html#__init__,Method Martel.msre_parse.Pattern.__init__()=Martel.msre_parse.Pattern-class.html#__init__,Method Martel.msre_parse.SubPattern.__init__()=Martel.msre_parse.SubPattern-class.html#__init__,Method Martel.msre_parse.Tokenizer.__init__()=Martel.msre_parse.Tokenizer-class.html#__init__,Method Martel.test.support.CheckGood.__init__()=Martel.test.support.CheckGood-class.html#__init__,Method Martel.test.support.Dump.__init__()=Martel.test.support.Dump-class.html#__init__,Method Martel.test.support.Storage.__init__()=Martel.test.support.Storage-class.html#__init__,Method Martel.test.test_Parser.CountErrors.__init__()=Martel.test.test_Parser.CountErrors-class.html#__init__,Method Martel.test.test_Parser.CountRecords.__init__()=Martel.test.test_Parser.CountRecords-class.html#__init__,Method Martel.test.test_delimiter.CatchFields.__init__()=Martel.test.test_delimiter.CatchFields-class.html#__init__,Method Martel.test.test_optimize.GetErrorPos.__init__()=Martel.test.test_optimize.GetErrorPos-class.html#__init__"><a title="Bio.Affy.CelFile.CelConsumer.__init__
Bio.Affy.CelFile.CelParser.__init__
Bio.Affy.CelFile.CelRecord.__init__
Bio.Ais.Immune.__init__
Bio.Ais.Lymphocyte.__init__
Bio.Align.AlignInfo.PSSM.__init__
Bio.Align.AlignInfo.SummaryInfo.__init__
Bio.Align.FormatConvert.FormatConverter.__init__
Bio.Align.Generic.Alignment.__init__
Bio.AlignAce.Applications.AlignAceCommandline.__init__
Bio.AlignAce.Applications.CompareAceCommandline.__init__
Bio.AlignAce.Motif.Motif.__init__
Bio.AlignAce.Parser.AlignAceConsumer.__init__
Bio.AlignAce.Parser.AlignAceParser.__init__
Bio.AlignAce.Parser.CompareAceConsumer.__init__
Bio.AlignAce.Parser.CompareAceParser.__init__
Bio.AlignIO.Interfaces.AlignmentIterator.__init__
Bio.AlignIO.Interfaces.AlignmentWriter.__init__
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__
Bio.Alphabet.AlphabetEncoder.__init__
Bio.Alphabet.Gapped.__init__
Bio.Alphabet.HasStopCodon.__init__
Bio.Application.AbstractCommandline.__init__
Bio.Application.ApplicationResult.__init__
Bio.Application._AbstractParameter.__init__
Bio.Blast.Applications.BlastallCommandline.__init__
Bio.Blast.Applications.FastacmdCommandline.__init__
Bio.Blast.NCBIStandalone.BlastErrorParser.__init__
Bio.Blast.NCBIStandalone.BlastParser.__init__
Bio.Blast.NCBIStandalone.Iterator.__init__
Bio.Blast.NCBIStandalone.PSIBlastParser.__init__
Bio.Blast.NCBIStandalone._BlastConsumer.__init__
Bio.Blast.NCBIStandalone._BlastErrorConsumer.__init__
Bio.Blast.NCBIStandalone._PSIBlastConsumer.__init__
Bio.Blast.NCBIWWW.BlastParser.__init__
Bio.Blast.NCBIXML.BlastParser.__init__
Bio.Blast.NCBIXML._XMLparser.__init__
Bio.Blast.ParseBlastTable.BlastTableEntry.__init__
Bio.Blast.ParseBlastTable.BlastTableReader.__init__
Bio.Blast.ParseBlastTable.BlastTableRec.__init__
Bio.Blast.Record.Alignment.__init__
Bio.Blast.Record.Blast.__init__
Bio.Blast.Record.DatabaseReport.__init__
Bio.Blast.Record.Description.__init__
Bio.Blast.Record.HSP.__init__
Bio.Blast.Record.Header.__init__
Bio.Blast.Record.MultipleAlignment.__init__
Bio.Blast.Record.PSIBlast.__init__
Bio.Blast.Record.Parameters.__init__
Bio.Blast.Record.Round.__init__
Bio.CAPS.CAPSMap.__init__
Bio.CAPS.DifferentialCutsite.__init__
Bio.CDD.Iterator.__init__
Bio.CDD.Record.Record.__init__
Bio.CDD.RecordParser.__init__
Bio.CDD._RecordConsumer.__init__
Bio.CDD._Scanner.__init__
Bio.Clustalw.ClustalAlignment.__init__
Bio.Clustalw.MultipleAlignCL.__init__
Bio.Cluster.DataFile.__init__
Bio.Cluster.Record.__init__
Bio.Compass.Iterator.__init__
Bio.Compass.Record.__init__
Bio.Compass.RecordParser.__init__
Bio.Compass._Consumer.__init__
Bio.Crystal.Chain.__init__
Bio.Crystal.Crystal.__init__
Bio.Crystal.CrystalError.__init__
Bio.Crystal.Error.__init__
Bio.Crystal.Hetero.__init__
Bio.DBXRef.DBXRef.__init__
Bio.Data.CodonTable.AmbiguousCodonTable.__init__
Bio.Data.CodonTable.AmbiguousForwardTable.__init__
Bio.Data.CodonTable.CodonTable.__init__
Bio.Data.CodonTable.NCBICodonTable.__init__
Bio.Decode.DecodeParser.__init__
Bio.Decode.DecodeScanner.__init__
Bio.Decode.Float.__init__
Bio.Decode.Function.__init__
Bio.Decode.FunctionCall.__init__
Bio.Decode.FunctionCallChain.__init__
Bio.Decode.FunctionName.__init__
Bio.Decode.Integer.__init__
Bio.Decode.String.__init__
Bio.Decode.Token.__init__
Bio.Decode.ValueToken.__init__
Bio.DocSQL.Create.__init__
Bio.DocSQL.Insert.__init__
Bio.DocSQL.IterationCursor.__init__
Bio.DocSQL.Query.__init__
Bio.DocSQL.QueryAll.__init__
Bio.DocSQL.QueryGeneric.__init__
Bio.DocSQL.QueryRow.__init__
Bio.DocSQL.QuerySingle.__init__
Bio.ECell.ECellError.__init__
Bio.ECell.Error.__init__
Bio.ECell.Iterator.__init__
Bio.ECell.Record.Record.__init__
Bio.ECell.RecordParser.__init__
Bio.ECell._RecordConsumer.__init__
Bio.ECell._Scanner.__init__
Bio.EUtils.Config.DatabaseInfo.__init__
Bio.EUtils.DBIdsClient.BaseDBIdsRecordSet.__init__
Bio.EUtils.DBIdsClient.DBIdsClient.__init__
Bio.EUtils.DBIdsClient.DBIdsLookup.__init__
Bio.EUtils.Datatypes.BinaryOp.__init__
Bio.EUtils.Datatypes.CheckLinkSet.__init__
Bio.EUtils.Datatypes.DBIds.__init__
Bio.EUtils.Datatypes.Date.__init__
Bio.EUtils.Datatypes.DateRange.__init__
Bio.EUtils.Datatypes.EUtilsSearchError.__init__
Bio.EUtils.Datatypes.IdCheck.__init__
Bio.EUtils.Datatypes.IdUrlSet.__init__
Bio.EUtils.Datatypes.Link.__init__
Bio.EUtils.Datatypes.LinkSetDb.__init__
Bio.EUtils.Datatypes.LinksLinkSet.__init__
Bio.EUtils.Datatypes.NeighborLinkSet.__init__
Bio.EUtils.Datatypes.ObjUrl.__init__
Bio.EUtils.Datatypes.PostResult.__init__
Bio.EUtils.Datatypes.Problem.__init__
Bio.EUtils.Datatypes.Provider.__init__
Bio.EUtils.Datatypes.Range.__init__
Bio.EUtils.Datatypes.SearchResult.__init__
Bio.EUtils.Datatypes.Summary.__init__
Bio.EUtils.Datatypes.Term.__init__
Bio.EUtils.Datatypes.WithinNDays.__init__
Bio.EUtils.HistoryClient.BaseHistoryRecordSet.__init__
Bio.EUtils.HistoryClient.HistoryClient.__init__
Bio.EUtils.HistoryClient.HistoryCookie.__init__
Bio.EUtils.HistoryClient.HistoryLookup.__init__
Bio.EUtils.HistoryClient.HistoryRecord.__init__
Bio.EUtils.MultiDict.OrderedMultiDict.__init__
Bio.EUtils.MultiDict.UnorderedMultiDict.__init__
Bio.EUtils.POM.Comment.__init__
Bio.EUtils.POM.ContentModel.__init__
Bio.EUtils.POM.DTDConsumerForSourceGeneration.__init__
Bio.EUtils.POM.ElementNode.__init__
Bio.EUtils.POM.IndentedText.__init__
Bio.EUtils.POM.ObjectParserHandler.__init__
Bio.EUtils.POM.POMDocument.__init__
Bio.EUtils.POM.XMLAttribute.__init__
Bio.EUtils.POM._ContentModelGenerator.__init__
Bio.EUtils.ReseekFile.ReseekFile.__init__
Bio.EUtils.ThinClient.ThinClient.__init__
Bio.EUtils.parse.UsePOMParser.__init__
Bio.EUtils.sourcegen.ClassHolder.__init__
Bio.EUtils.sourcegen.FunctionHolder.__init__
Bio.EUtils.sourcegen.MethodHolder.__init__
Bio.EUtils.sourcegen.SourceFile.__init__
Bio.EUtils.sourcegen.SourceGen.__init__
Bio.Emboss.Applications.EConsenseCommandline.__init__
Bio.Emboss.Applications.EInvertedCommandline.__init__
Bio.Emboss.Applications.ENeighborCommandline.__init__
Bio.Emboss.Applications.EProtDistCommandline.__init__
Bio.Emboss.Applications.EProtParsCommandline.__init__
Bio.Emboss.Applications.ESeqBootCommandline.__init__
Bio.Emboss.Applications.ETandemCommandline.__init__
Bio.Emboss.Applications.Est2GenomeCommandline.__init__
Bio.Emboss.Applications.FuzznucCommandline.__init__
Bio.Emboss.Applications.PalindromeCommandline.__init__
Bio.Emboss.Applications.Primer3Commandline.__init__
Bio.Emboss.Applications.PrimerSearchCommandline.__init__
Bio.Emboss.Applications.TranalignCommandline.__init__
Bio.Emboss.Applications.WaterCommandline.__init__
Bio.Emboss.Primer.Primer3Parser.__init__
Bio.Emboss.Primer.Primer3Primers.__init__
Bio.Emboss.Primer.Primer3Record.__init__
Bio.Emboss.Primer.PrimerSearchAmplifier.__init__
Bio.Emboss.Primer.PrimerSearchInputRecord.__init__
Bio.Emboss.Primer.PrimerSearchOutputRecord.__init__
Bio.Emboss.Primer.PrimerSearchParser.__init__
Bio.Emboss.Primer._Primer3RecordConsumer.__init__
Bio.Emboss.Primer._Primer3Scanner.__init__
Bio.Emboss.Primer._PrimerSearchRecordConsumer.__init__
Bio.Emboss.Primer._PrimerSearchScanner.__init__
Bio.Entrez.Parser.DataHandler.__init__
Bio.Entrez.Parser.StructureElement.__init__
Bio.Enzyme.DataRecord.__init__
Bio.Enzyme.EnzymeRecord.__init__
Bio.Enzyme.Iterator.__init__
Bio.Enzyme.RecordParser.__init__
Bio.Enzyme._RecordConsumer.__init__
Bio.FSSP.FSSPAlignDict.__init__
Bio.FSSP.FSSPAlignRec.__init__
Bio.FSSP.FSSPHeader.__init__
Bio.FSSP.FSSPSumRec.__init__
Bio.FSSP.FSSPTools.FSSPMultAlign.__init__
Bio.FSSP.PosAlign.__init__
Bio.FSSP.fssp_rec.fff_rec.__init__
Bio.Fasta.FastaAlign.FastaAlignment.__init__
Bio.Fasta.Iterator.__init__
Bio.Fasta.Record.__init__
Bio.Fasta.RecordParser.__init__
Bio.Fasta.SequenceParser.__init__
Bio.File.SGMLHandle.__init__
Bio.File.SGMLStripper.MyParser.__init__
Bio.File.SGMLStripper.__init__
Bio.File.UndoHandle.__init__
Bio.FilteredReader.FilteredReader.__init__
Bio.GA.Crossover.General.SafeFitnessCrossover.__init__
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.__init__
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover.__init__
Bio.GA.Crossover.Point.SinglePointCrossover.__init__
Bio.GA.Crossover.TwoPoint.TwoPointCrossover.__init__
Bio.GA.Crossover.Uniform.UniformCrossover.__init__
Bio.GA.Evolver.GenerationEvolver.__init__
Bio.GA.Evolver.SteadyStateEvolver.__init__
Bio.GA.Mutation.General.SafeFitnessMutation.__init__
Bio.GA.Mutation.Simple.ConversionMutation.__init__
Bio.GA.Mutation.Simple.SinglePositionMutation.__init__
Bio.GA.Organism.Organism.__init__
Bio.GA.Repair.Stabilizing.AmbiguousRepair.__init__
Bio.GA.Selection.Abstract.AbstractSelection.__init__
Bio.GA.Selection.Diversity.DiversitySelection.__init__
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection.__init__
Bio.GA.Selection.Tournament.TournamentSelection.__init__
Bio.GFF.Connection.__init__
Bio.GFF.Feature.__init__
Bio.GFF.FeatureAggregate.__init__
Bio.GFF.FeatureQuery.__init__
Bio.GFF.FeatureQueryRow.__init__
Bio.GFF.GenericTools.ArgsParser.__init__
Bio.GFF.GenericTools.Surrogate.__init__
Bio.GFF.GenericTools.TempFile.__init__
Bio.GFF.RetrieveSeqname.__init__
Bio.GFF.Segment.__init__
Bio.GFF.easy.FeatureDict.__init__
Bio.GFF.easy.Location.__init__
Bio.GFF.easy.LocationFromCoords.__init__
Bio.GFF.easy.LocationFromString.__init__
Bio.GFF.easy.LocationJoin.__init__
Bio.GenBank.FeatureParser.__init__
Bio.GenBank.Iterator.__init__
Bio.GenBank.LocationParser.AbsoluteLocation.__init__
Bio.GenBank.LocationParser.Between.__init__
Bio.GenBank.LocationParser.FeatureName.__init__
Bio.GenBank.LocationParser.Function.__init__
Bio.GenBank.LocationParser.HighBound.__init__
Bio.GenBank.LocationParser.Integer.__init__
Bio.GenBank.LocationParser.LocationParser.__init__
Bio.GenBank.LocationParser.LocationScanner.__init__
Bio.GenBank.LocationParser.LowBound.__init__
Bio.GenBank.LocationParser.Path.__init__
Bio.GenBank.LocationParser.Range.__init__
Bio.GenBank.LocationParser.Symbol.__init__
Bio.GenBank.LocationParser.Token.__init__
Bio.GenBank.LocationParser.TwoBound.__init__
Bio.GenBank.NCBIDictionary.__init__
Bio.GenBank.Record.Feature.__init__
Bio.GenBank.Record.Qualifier.__init__
Bio.GenBank.Record.Record.__init__
Bio.GenBank.Record.Reference.__init__
Bio.GenBank.RecordParser.__init__
Bio.GenBank.Scanner.InsdcScanner.__init__
Bio.GenBank._BaseGenBankConsumer.__init__
Bio.GenBank._FeatureConsumer.__init__
Bio.GenBank._RecordConsumer.__init__
Bio.GenBank.utils.FeatureValueCleaner.__init__
Bio.Geo.Record.Record.__init__
Bio.Gobase.Dictionary.__init__
Bio.Gobase.GeneRecord.__init__
Bio.Gobase.Iterator.__init__
Bio.Gobase.ProteinRecord.__init__
Bio.Gobase.Record.__init__
Bio.Gobase.RecordParser.__init__
Bio.Gobase.SequenceRecord.__init__
Bio.Gobase._RecordConsumer.__init__
Bio.Graphics.BasicChromosome.Chromosome.__init__
Bio.Graphics.BasicChromosome.ChromosomeSegment.__init__
Bio.Graphics.BasicChromosome.Organism.__init__
Bio.Graphics.BasicChromosome.TelomereSegment.__init__
Bio.Graphics.BasicChromosome._ChromosomeComponent.__init__
Bio.Graphics.Comparative.ComparativeScatterPlot.__init__
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.__init__
Bio.Graphics.Distribution.BarChartDistribution.__init__
Bio.Graphics.Distribution.DistributionPage.__init__
Bio.Graphics.Distribution.LineDistribution.__init__
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.__init__
Bio.HMM.DynamicProgramming.LogDPAlgorithms.__init__
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms.__init__
Bio.HMM.MarkovModel.HiddenMarkovModel.__init__
Bio.HMM.MarkovModel.MarkovModelBuilder.__init__
Bio.HMM.Trainer.AbstractTrainer.__init__
Bio.HMM.Trainer.BaumWelchTrainer.__init__
Bio.HMM.Trainer.KnownStateTrainer.__init__
Bio.HMM.Trainer.TrainingSequence.__init__
Bio.HotRand.HotCache.__init__
Bio.HotRand.HotRandom.__init__
Bio.Index._InMemoryIndex.__init__
Bio.Index._ShelveIndex.__init__
Bio.IntelliGenetics.IntelliGeneticsReader.__init__
Bio.IntelliGenetics.Iterator.__init__
Bio.IntelliGenetics.Record.Record.__init__
Bio.IntelliGenetics.RecordParser.__init__
Bio.IntelliGenetics._RecordConsumer.__init__
Bio.IntelliGenetics._Scanner.__init__
Bio.KDTree.CKDTree.KDTree.__init__
Bio.KDTree.CKDTree.KDTreePtr.__init__
Bio.KDTree.KDTree.KDTree.__init__
Bio.KEGG.Compound.Record.__init__
Bio.KEGG.Enzyme.Record.__init__
Bio.LocusLink.Iterator.__init__
Bio.LocusLink.Record.__init__
Bio.LocusLink.RecordParser.__init__
Bio.LocusLink._RecordConsumer.__init__
Bio.LocusLink._Scanner.__init__
Bio.LocusLink.web_parse.Record.__init__
Bio.LocusLink.web_parse.Token.__init__
Bio.LocusLink.web_parse.Url.__init__
Bio.LogisticRegression.LogisticRegression.__init__
Bio.MEME.Motif.Instance.__init__
Bio.MEME.Motif.MEMEMotif.__init__
Bio.MEME.Motif.Motif.__init__
Bio.MEME.Parser.MASTParser.__init__
Bio.MEME.Parser.MASTRecord.__init__
Bio.MEME.Parser.MEMEParser.__init__
Bio.MEME.Parser.MEMERecord.__init__
Bio.MEME.Parser._MASTConsumer.__init__
Bio.MEME.Parser._MEMEConsumer.__init__
Bio.MarkovModel.MarkovModel.__init__
Bio.MaxEntropy.MaxEntropy.__init__
Bio.Medline.Iterator.__init__
Bio.Medline.Record.__init__
Bio.Medline.RecordParser.__init__
Bio.Medline._RecordConsumer.__init__
Bio.MetaTool.Iterator.__init__
Bio.MetaTool.Record.Metabolite.__init__
Bio.MetaTool.Record.MetaboliteRole.__init__
Bio.MetaTool.Record.PathwayTransform.__init__
Bio.MetaTool.Record.Record.__init__
Bio.MetaTool.RecordParser.__init__
Bio.MetaTool._RecordConsumer.__init__
Bio.MetaTool._Scanner.__init__
Bio.Mindy.BaseDB.OpenDB.__init__
Bio.Mindy.BerkeleyDB.BerkeleyDB.__init__
Bio.Mindy.BerkeleyDB.PrimaryNamespace.__init__
Bio.Mindy.BerkeleyDB.SecondaryNamespace.__init__
Bio.Mindy.FlatDB.BaseFlatDB.__init__
Bio.Mindy.FlatDB.BisectFile.__init__
Bio.Mindy.FlatDB.DiskFlatDB.__init__
Bio.Mindy.FlatDB.MemoryFlatDB.__init__
Bio.Mindy.FlatDB.PrimaryNamespace.__init__
Bio.Mindy.FlatDB.PrimaryTable.__init__
Bio.Mindy.FlatDB.SecondaryNamespace.__init__
Bio.Mindy.FlatDB.SecondaryTable.__init__
Bio.Mindy.Location.Location.__init__
Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer.__init__
Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder.__init__
Bio.Mindy.SimpleSeqRecord.FunctionIndexer.__init__
Bio.Mindy.SimpleSeqRecord.SimpleIndexer.__init__
Bio.Mindy.XPath.GrabXPathNodes.__init__
Bio.NBRF.Iterator.__init__
Bio.NBRF.Record.Record.__init__
Bio.NBRF.RecordParser.__init__
Bio.NBRF._RecordConsumer.__init__
Bio.NBRF._Scanner.__init__
Bio.NMR.xpktools.Peaklist.__init__
Bio.NMR.xpktools.XpkEntry.__init__
Bio.NaiveBayes.NaiveBayes.__init__
Bio.Ndb.Record.__init__
Bio.NetCatch.ExtractUrls.__init__
Bio.NetCatch.NetCatch.__init__
Bio.NetCatch.Url.__init__
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.__init__
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer.__init__
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer.__init__
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.__init__
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork.__init__
Bio.NeuralNetwork.Gene.Motif.MotifCoder.__init__
Bio.NeuralNetwork.Gene.Motif.MotifFinder.__init__
Bio.NeuralNetwork.Gene.Pattern.PatternIO.__init__
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.__init__
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness.__init__
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder.__init__
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness.__init__
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator.__init__
Bio.NeuralNetwork.Gene.Schema.Schema.__init__
Bio.NeuralNetwork.Gene.Schema.SchemaCoder.__init__
Bio.NeuralNetwork.Gene.Schema.SchemaFactory.__init__
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.__init__
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher.__init__
Bio.NeuralNetwork.Gene.Signature.SignatureCoder.__init__
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.__init__
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop.__init__
Bio.NeuralNetwork.Training.ExampleManager.__init__
Bio.NeuralNetwork.Training.TrainingExample.__init__
Bio.Nexus.Nexus.Block.__init__
Bio.Nexus.Nexus.CharBuffer.__init__
Bio.Nexus.Nexus.Commandline.__init__
Bio.Nexus.Nexus.Nexus.__init__
Bio.Nexus.Nexus.StepMatrix.__init__
Bio.Nexus.Nodes.Chain.__init__
Bio.Nexus.Nodes.Node.__init__
Bio.Nexus.Trees.NodeData.__init__
Bio.Nexus.Trees.Tree.__init__
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap.__init__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__init__
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap.__init__
Bio.PDB.Atom.Atom.__init__
Bio.PDB.Atom.DisorderedAtom.__init__
Bio.PDB.Chain.Chain.__init__
Bio.PDB.DSSP'.DSSP.__init__
Bio.PDB.Dice.ChainSelector.__init__
Bio.PDB.Entity.DisorderedEntityWrapper.__init__
Bio.PDB.Entity.Entity.__init__
Bio.PDB.FragmentMapper'.Fragment.__init__
Bio.PDB.FragmentMapper'.FragmentMapper.__init__
Bio.PDB.HSExposure.ExposureCN.__init__
Bio.PDB.HSExposure.HSExposureCA.__init__
Bio.PDB.HSExposure.HSExposureCB.__init__
Bio.PDB.HSExposure._AbstractHSExposure.__init__
Bio.PDB.MMCIF2Dict.MMCIF2Dict.__init__
Bio.PDB.Model.Model.__init__
Bio.PDB.NACCESS.NACCESS.__init__
Bio.PDB.NACCESS.NACCESS_atomic.__init__
Bio.PDB.NeighborSearch.NeighborSearch.__init__
Bio.PDB.PDBIO'.PDBIO.__init__
Bio.PDB.PDBList'.PDBList.__init__
Bio.PDB.PDBParser'.PDBParser.__init__
Bio.PDB.PSEA.PSEA.__init__
Bio.PDB.Polypeptide.CaPPBuilder.__init__
Bio.PDB.Polypeptide.PPBuilder.__init__
Bio.PDB.Polypeptide._PPBuilder.__init__
Bio.PDB.Residue.DisorderedResidue.__init__
Bio.PDB.Residue.Residue.__init__
Bio.PDB.ResidueDepth'.ResidueDepth.__init__
Bio.PDB.Structure.Structure.__init__
Bio.PDB.StructureAlignment'.StructureAlignment.__init__
Bio.PDB.StructureBuilder.StructureBuilder.__init__
Bio.PDB.Superimposer'.Superimposer.__init__
Bio.PDB.Vector'.Vector.__init__
Bio.ParserSupport.EventGenerator.__init__
Bio.ParserSupport.SGMLStrippingConsumer.__init__
Bio.ParserSupport.TaggingConsumer.__init__
Bio.Parsers.spark.GenericASTBuilder.__init__
Bio.Parsers.spark.GenericASTMatcher.__init__
Bio.Parsers.spark.GenericASTTraversal.__init__
Bio.Parsers.spark.GenericParser.__init__
Bio.Parsers.spark.GenericScanner.__init__
Bio.Pathway.Network.__init__
Bio.Pathway.Reaction.__init__
Bio.Pathway.Rep.Graph.Graph.__init__
Bio.Pathway.Rep.HashSet.HashSet.__init__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__init__
Bio.Pathway.System.__init__
Bio.PopGen.Async.Async.__init__
Bio.PopGen.Async.DirectoryRetriever.__init__
Bio.PopGen.Async.FileRetriever.__init__
Bio.PopGen.Async.Local.Local.__init__
Bio.PopGen.FDist.Async.FDistAsync.__init__
Bio.PopGen.FDist.Async.SplitFDist.__init__
Bio.PopGen.FDist.Controller.FDistController.__init__
Bio.PopGen.FDist.Record.__init__
Bio.PopGen.FDist.RecordParser.__init__
Bio.PopGen.FDist._RecordConsumer.__init__
Bio.PopGen.GenePop.Record.__init__
Bio.PopGen.GenePop.RecordParser.__init__
Bio.PopGen.GenePop._RecordConsumer.__init__
Bio.PopGen.SimCoal.Async.SimCoalCache.__init__
Bio.PopGen.SimCoal.Cache.SimCoalCache.__init__
Bio.PopGen.SimCoal.Controller.SimCoalController.__init__
Bio.PropertyManager.PropertyManager.__init__
Bio.Prosite.Dictionary.__init__
Bio.Prosite.ExPASyDictionary.__init__
Bio.Prosite.Iterator.__init__
Bio.Prosite.Pattern.Prosite.__init__
Bio.Prosite.Pattern.PrositeMatch.__init__
Bio.Prosite.Pattern.PrositeTerm.__init__
Bio.Prosite.PatternHit.__init__
Bio.Prosite.Prodoc.Dictionary.__init__
Bio.Prosite.Prodoc.ExPASyDictionary.__init__
Bio.Prosite.Prodoc.Iterator.__init__
Bio.Prosite.Prodoc.Record.__init__
Bio.Prosite.Prodoc.RecordParser.__init__
Bio.Prosite.Prodoc.Reference.__init__
Bio.Prosite.Prodoc._RecordConsumer.__init__
Bio.Prosite.Record.__init__
Bio.Prosite.RecordParser.__init__
Bio.Prosite._RecordConsumer.__init__
Bio.PubMed.Dictionary.__init__
Bio.Rebase.Dictionary.__init__
Bio.Rebase.Iterator.__init__
Bio.Rebase.Record.__init__
Bio.Rebase.RecordParser.__init__
Bio.Rebase._RecordConsumer.__init__
Bio.Restriction.PrintFormat.PrintFormat.__init__
Bio.Restriction.Restriction.Analysis.__init__
Bio.Restriction.Restriction.FormattedSeq.__init__
Bio.Restriction.Restriction.RestrictionBatch.__init__
Bio.Restriction.Restriction.RestrictionType.__init__
Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.__init__
Bio.Restriction._Update.RestrictionCompiler.TypeCompiler.__init__
Bio.Restriction._Update.RestrictionCompiler.newenzyme.__init__
Bio.Restriction._Update.Update.ConnectionError.__init__
Bio.Restriction._Update.Update.FtpNameError.__init__
Bio.Restriction._Update.Update.FtpPasswordError.__init__
Bio.Restriction._Update.Update.RebaseUpdate.__init__
Bio.SCOP.Astral.__init__
Bio.SCOP.Cla.Index.__init__
Bio.SCOP.Cla.Iterator.__init__
Bio.SCOP.Cla.Parser.__init__
Bio.SCOP.Cla.Record.__init__
Bio.SCOP.Des.Iterator.__init__
Bio.SCOP.Des.Parser.__init__
Bio.SCOP.Des.Record.__init__
Bio.SCOP.Dom.Iterator.__init__
Bio.SCOP.Dom.Record.__init__
Bio.SCOP.Domain.__init__
Bio.SCOP.FileIndex.FileIndex.__init__
Bio.SCOP.FileIndex.defaultdict.__init__
Bio.SCOP.Hie.Iterator.__init__
Bio.SCOP.Hie.Parser.__init__
Bio.SCOP.Hie.Record.__init__
Bio.SCOP.Node.__init__
Bio.SCOP.Raf.Iterator.__init__
Bio.SCOP.Raf.Parser.__init__
Bio.SCOP.Raf.Res.__init__
Bio.SCOP.Raf.SeqMap.__init__
Bio.SCOP.Raf.SeqMapIndex.__init__
Bio.SCOP.Residues'.Residues.__init__
Bio.SCOP.Scop.__init__
Bio.SGMLExtractor.SGMLExtractor.LocalParser.__init__
Bio.SGMLExtractor.SGMLExtractor.__init__
Bio.SGMLExtractor.SGMLExtractorHandle.__init__
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer.__init__
Bio.Saf.Iterator.__init__
Bio.Saf.Record.Record.__init__
Bio.Saf.RecordParser.__init__
Bio.Saf._RecordConsumer.__init__
Bio.Saf._Scanner.__init__
Bio.Search.Algorithm.__init__
Bio.Search.Database.__init__
Bio.Search.HSP.__init__
Bio.Search.HSPSeq.__init__
Bio.Search.Hit.__init__
Bio.Search.HomologySeq.__init__
Bio.Search.Query.__init__
Bio.Search.Search.__init__
Bio.Search.TableInfo.__init__
Bio.Search._SeqLength.__init__
Bio.Seq.MutableSeq.__init__
Bio.Seq.Seq.__init__
Bio.SeqFeature.AbstractPosition.__init__
Bio.SeqFeature.AfterPosition.__init__
Bio.SeqFeature.BeforePosition.__init__
Bio.SeqFeature.BetweenPosition.__init__
Bio.SeqFeature.ExactPosition.__init__
Bio.SeqFeature.FeatureLocation.__init__
Bio.SeqFeature.OneOfPosition.__init__
Bio.SeqFeature.PositionGap.__init__
Bio.SeqFeature.Reference.__init__
Bio.SeqFeature.SeqFeature.__init__
Bio.SeqFeature.WithinPosition.__init__
Bio.SeqIO.ClustalIO.ClustalWriter.__init__
Bio.SeqIO.FastaIO.FastaWriter.__init__
Bio.SeqIO.Interfaces.InterlacedSequenceIterator.__init__
Bio.SeqIO.Interfaces.SequenceIterator.__init__
Bio.SeqIO.Interfaces.SequenceWriter.__init__
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__
Bio.SeqIO.PhylipIO.PhylipWriter.__init__
Bio.SeqIO.StockholmIO.StockholmIterator.__init__
Bio.SeqIO.StockholmIO.StockholmWriter.__init__
Bio.SeqRecord.SeqRecord.__init__
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex.__init__
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint.__init__
Bio.SeqUtils.MissingTable.__init__
Bio.SeqUtils.ProtParam.ProteinAnalysis.__init__
Bio.Sequencing.Ace.ACEFileRecord.__init__
Bio.Sequencing.Ace.ACEParser.__init__
Bio.Sequencing.Ace.Contig.__init__
Bio.Sequencing.Ace.Iterator.__init__
Bio.Sequencing.Ace.Reads.__init__
Bio.Sequencing.Ace.RecordParser.__init__
Bio.Sequencing.Ace._RecordConsumer.__init__
Bio.Sequencing.Ace.af.__init__
Bio.Sequencing.Ace.bs.__init__
Bio.Sequencing.Ace.ct.__init__
Bio.Sequencing.Ace.ds.__init__
Bio.Sequencing.Ace.qa.__init__
Bio.Sequencing.Ace.rd.__init__
Bio.Sequencing.Ace.rt.__init__
Bio.Sequencing.Ace.wa.__init__
Bio.Sequencing.Ace.wr.__init__
Bio.Sequencing.Phd.Iterator.__init__
Bio.Sequencing.Phd.Record.__init__
Bio.Sequencing.Phd.RecordParser.__init__
Bio.Sequencing.Phd._RecordConsumer.__init__
Bio.Std.StdTerm.__init__
Bio.StdHandler.ConvertDispatchHandler.__init__
Bio.StdHandler.ConvertHandler.__init__
Bio.StdHandler.Feature.__init__
Bio.StdHandler.Handle_dbxref.__init__
Bio.StdHandler.Handle_feature_location.__init__
Bio.StdHandler.Handle_feature_qualifier.__init__
Bio.StdHandler.Handle_features.__init__
Bio.StdHandler.Handle_hsp.__init__
Bio.StdHandler.RecognizeHandler.__init__
Bio.SubsMat.FreqTable.FreqTable.__init__
Bio.SubsMat.SeqMat.__init__
Bio.SwissProt.KeyWList.ListParser.__init__
Bio.SwissProt.KeyWList.Record.__init__
Bio.SwissProt.KeyWList._ListConsumer.__init__
Bio.SwissProt.KeyWList._Scanner.__init__
Bio.SwissProt.SProt.Dictionary.__init__
Bio.SwissProt.SProt.ExPASyDictionary.__init__
Bio.SwissProt.SProt.Iterator.__init__
Bio.SwissProt.SProt.Record.__init__
Bio.SwissProt.SProt.RecordParser.__init__
Bio.SwissProt.SProt.Reference.__init__
Bio.SwissProt.SProt.SequenceParser.__init__
Bio.SwissProt.SProt._RecordConsumer.__init__
Bio.SwissProt.SProt._SequenceConsumer.__init__
Bio.Transcribe.Transcribe.__init__
Bio.Translate.Translator.__init__
Bio.UniGene.Iterator.__init__
Bio.UniGene.RecordParser.__init__
Bio.UniGene.UnigeneProtsimRecord.__init__
Bio.UniGene.UnigeneRecord.__init__
Bio.UniGene.UnigeneSTSRecord.__init__
Bio.UniGene.UnigeneSequenceRecord.__init__
Bio.UniGene._RecordConsumer.__init__
Bio.WWW.RequestLimiter.__init__
Bio.Wise.dnal.Statistics.__init__
Bio.Wise.psw.AlignmentColumn.__init__
Bio.Wise.psw.ColumnUnit.__init__
Bio.Writer.Writer.__init__
Bio.biblio.Biblio.__init__
Bio.biblio.BiblioCollection.__init__
Bio.builders.Search.search.BuildSearch.__init__
Bio.builders.SeqRecord.sequence.BuildSeqRecord.__init__
Bio.config.DBRegistry.BioCorbaDB.__init__
Bio.config.DBRegistry.BioSQLDB.__init__
Bio.config.DBRegistry.CGIDB.__init__
Bio.config.DBRegistry.DBGroup.__init__
Bio.config.DBRegistry.DBObject.__init__
Bio.config.DBRegistry.DBRegistry.__init__
Bio.config.DBRegistry.EUtilsDB.__init__
Bio.config.DBRegistry.IndexedFileDB.__init__
Bio.config.FormatRegistry.FormatGroup.__init__
Bio.config.FormatRegistry.FormatObject.__init__
Bio.config.FormatRegistry.FormatRegistry.__init__
Bio.config.Registry.RegisterableGroup.__init__
Bio.config.Registry.RegisterableObject.__init__
Bio.config.Registry.Registry.__init__
Bio.config.SeqDBRegistry.SeqDBRegistry.__init__
Bio.config._stanzaformat.Stanza.__init__
Bio.config._stanzaformat.StanzaFormat.__init__
Bio.config._support.make_cached_expression.__init__
Bio.config._support.make_rate_limited_function.__init__
Bio.kNN.kNN.__init__
Bio.pairwise2.affine_penalty.__init__
Bio.pairwise2.dictionary_match.__init__
Bio.pairwise2.identity_match.__init__
Bio.writers.SeqRecord.embl.WriteEmbl.__init__
Bio.writers.SeqRecord.fasta.WriteFasta.__init__
BioSQL.BioSeq.DBSeq.__init__
BioSQL.BioSeq.DBSeqRecord.__init__
BioSQL.BioSeqDatabase.Adaptor.__init__
BioSQL.BioSeqDatabase.BioSeqDatabase.__init__
BioSQL.BioSeqDatabase.DBServer.__init__
BioSQL.DBUtils.Generic_dbutils.__init__
BioSQL.Loader.DatabaseLoader.__init__
BioSQL.Loader.DatabaseRemover.__init__
Martel.Dispatch.Callback.__init__
Martel.Dispatch.DispatchHandler.__init__
Martel.Dispatch.Dispatcher.__init__
Martel.Dispatch.Multicall.__init__
Martel.Dispatch.RemapEnd.__init__
Martel.Dispatch.RemapStart.__init__
Martel.Expression.Alt.__init__
Martel.Expression.Any.__init__
Martel.Expression.Assert.__init__
Martel.Expression.Debug.__init__
Martel.Expression.FastFeature.__init__
Martel.Expression.Group.__init__
Martel.Expression.GroupRef.__init__
Martel.Expression.HeaderFooter.__init__
Martel.Expression.Literal.__init__
Martel.Expression.MaxRepeat.__init__
Martel.Expression.NullOp.__init__
Martel.Expression.ParseRecords.__init__
Martel.Expression.PassThrough.__init__
Martel.Expression.Seq.__init__
Martel.Expression.Str.__init__
Martel.Generate.CheckAssert.__init__
Martel.Generate.CheckAssertNot.__init__
Martel.Generate.CheckGroupRef.__init__
Martel.Generate.GeneratorState.__init__
Martel.Generate.HandleRepeatCount.__init__
Martel.Generate.SetGroupValue.__init__
Martel.Generate._call_call.__init__
Martel.Generate._call_calltag.__init__
Martel.Generate.print_debug.__init__
Martel.Generate.print_info.__init__
Martel.IterParser.IterHeaderFooter.__init__
Martel.IterParser.IterRecords.__init__
Martel.Iterator.EventStream.__init__
Martel.Iterator.HeaderFooterEventStream.__init__
Martel.Iterator.Iterate.__init__
Martel.Iterator.Iterator.__init__
Martel.Iterator.IteratorHeaderFooter.__init__
Martel.Iterator.IteratorRecords.__init__
Martel.Iterator.RecordEventStream.__init__
Martel.Iterator.StoreEvents.__init__
Martel.LAX.ElementInfo.__init__
Martel.LAX.LAX.__init__
Martel.Parser.HeaderFooterParser.__init__
Martel.Parser.Parser.__init__
Martel.Parser.ParserIncompleteException.__init__
Martel.Parser.ParserPositionException.__init__
Martel.Parser.RecordParser.__init__
Martel.RecordReader.CountLines.__init__
Martel.RecordReader.EndsWith.__init__
Martel.RecordReader.Everything.__init__
Martel.RecordReader.Nothing.__init__
Martel.RecordReader.RecordReader.__init__
Martel.RecordReader.StartsWith.__init__
Martel.RecordReader.Until.__init__
Martel.convert_re.GroupNames.__init__
Martel.msre_parse.Pattern.__init__
Martel.msre_parse.SubPattern.__init__
Martel.msre_parse.Tokenizer.__init__
Martel.test.support.CheckGood.__init__
Martel.test.support.Dump.__init__
Martel.test.support.Storage.__init__
Martel.test.test_Parser.CountErrors.__init__
Martel.test.test_Parser.CountRecords.__init__
Martel.test.test_delimiter.CatchFields.__init__
Martel.test.test_optimize.GetErrorPos.__init__" class="py-name" href="#" onclick="return doclink('link-81', '__init__', 'link-81');">__init__</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> </tt>
<a name="Record.__str__"></a><div id="Record.__str__-def"><a name="L162"></a><tt class="py-lineno">162</tt> <a class="py-toggle" href="#" id="Record.__str__-toggle" onclick="return toggle('Record.__str__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Record-class.html#__str__">__str__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record.__str__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Record.__str__-expanded"><a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-name">queue_keys</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name" targets="Method Bio.Crystal.Crystal.keys()=Bio.Crystal.Crystal-class.html#keys,Method Bio.EUtils.MultiDict._BaseMultiDict.keys()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#keys,Method Bio.GenBank.NCBIDictionary.keys()=Bio.GenBank.NCBIDictionary-class.html#keys,Method Bio.Mindy.BaseDB.DictLookup.keys()=Bio.Mindy.BaseDB.DictLookup-class.html#keys,Method Bio.Mindy.BaseDB.OpenDB.keys()=Bio.Mindy.BaseDB.OpenDB-class.html#keys,Method Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys()=Bio.Mindy.BerkeleyDB.PrimaryNamespace-class.html#keys,Method Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys()=Bio.Mindy.BerkeleyDB.SecondaryNamespace-class.html#keys,Method Bio.Mindy.FlatDB.PrimaryNamespace.keys()=Bio.Mindy.FlatDB.PrimaryNamespace-class.html#keys,Method Bio.Mindy.FlatDB.PrimaryTable.keys()=Bio.Mindy.FlatDB.PrimaryTable-class.html#keys,Method Bio.Mindy.FlatDB.SecondaryNamespace.keys()=Bio.Mindy.FlatDB.SecondaryNamespace-class.html#keys,Method Bio.Mindy.FlatDB.SecondaryTable.keys()=Bio.Mindy.FlatDB.SecondaryTable-class.html#keys,Method Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys()=Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys,Method Bio.Prosite.ExPASyDictionary.keys()=Bio.Prosite.ExPASyDictionary-class.html#keys,Method Bio.Prosite.Prodoc.ExPASyDictionary.keys()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#keys,Method Bio.PubMed.Dictionary.keys()=Bio.PubMed.Dictionary-class.html#keys,Method Bio.SwissProt.SProt.Dictionary.keys()=Bio.SwissProt.SProt.Dictionary-class.html#keys,Method Bio.SwissProt.SProt.ExPASyDictionary.keys()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#keys,Method Bio.config.Registry.Registry.keys()=Bio.config.Registry.Registry-class.html#keys,Method BioSQL.BioSeqDatabase.BioSeqDatabase.keys()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#keys,Method BioSQL.BioSeqDatabase.DBServer.keys()=BioSQL.BioSeqDatabase.DBServer-class.html#keys,Method Martel.Parser.MartelAttributeList.keys()=Martel.Parser.MartelAttributeList-class.html#keys"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-82', 'keys', 'link-82');">keys</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-name">queue_keys</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name" targets="Method Bio.PDB.Residue.DisorderedResidue.sort()=Bio.PDB.Residue.DisorderedResidue-class.html#sort,Method Bio.PDB.Residue.Residue.sort()=Bio.PDB.Residue.Residue-class.html#sort,Method Bio.Sequencing.Ace.ACEFileRecord.sort()=Bio.Sequencing.Ace.ACEFileRecord-class.html#sort"><a title="Bio.PDB.Residue.DisorderedResidue.sort
Bio.PDB.Residue.Residue.sort
Bio.Sequencing.Ace.ACEFileRecord.sort" class="py-name" href="#" onclick="return doclink('link-83', 'sort', 'link-83');">sort</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-84" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-84', 'key', 'link-21');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">queue_keys</tt><tt class="py-op">:</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s:\n'</tt> <tt class="py-op">%</tt> <tt id="link-85" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-85', 'key', 'link-21');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">upper</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name" targets="Method Bio.LocusLink.Record.print_item()=Bio.LocusLink.Record-class.html#print_item,Method Bio.LocusLink.web_parse.Record.print_item()=Bio.LocusLink.web_parse.Record-class.html#print_item"><a title="Bio.LocusLink.Record.print_item
Bio.LocusLink.web_parse.Record.print_item" class="py-name" href="#" onclick="return doclink('link-86', 'print_item', 'link-86');">print_item</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt id="link-87" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-87', 'key', 'link-21');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'\n'</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">out</tt> </tt>
</div><a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> </tt>
<a name="Record.print_item"></a><div id="Record.print_item-def"><a name="L173"></a><tt class="py-lineno">173</tt> <a class="py-toggle" href="#" id="Record.print_item-toggle" onclick="return toggle('Record.print_item');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.Record-class.html#print_item">print_item</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">item</tt><tt class="py-op">,</tt> <tt class="py-param">level</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record.print_item-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Record.print_item-expanded"><a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-name">indent</tt> <tt class="py-op">=</tt> <tt class="py-string">' '</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">level</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-name">indent</tt> <tt class="py-op">=</tt> <tt class="py-name">indent</tt> <tt class="py-op">+</tt> <tt class="py-string">' '</tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-88" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-88', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt id="link-89" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-89', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-90" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-90', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-91" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-91', 'item', 'link-3');">item</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt class="py-name">indent</tt><tt class="py-op">,</tt> <tt id="link-92" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-92', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt><tt class="py-op">(</tt> <tt id="link-93" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-93', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt id="link-94" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-94', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-95" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-95', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">subitem</tt> <tt class="py-keyword">in</tt> <tt id="link-96" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-96', 'item', 'link-3');">item</a></tt><tt class="py-op">:</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="Bio.LocusLink.Record.print_item
Bio.LocusLink.web_parse.Record.print_item" class="py-name" href="#" onclick="return doclink('link-97', 'print_item', 'link-86');">print_item</a></tt><tt class="py-op">(</tt> <tt class="py-name">subitem</tt><tt class="py-op">,</tt> <tt class="py-name">level</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> <tt class="py-op">)</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'----------------------------------------------\n'</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt><tt class="py-op">(</tt> <tt id="link-98" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-98', 'type', 'link-5');">type</a></tt><tt class="py-op">(</tt> <tt id="link-99" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-99', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-100" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-100', 'type', 'link-5');">type</a></tt> <tt class="py-op">(</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt id="link-101" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-101', 'keys', 'link-82');">keys</a></tt> <tt class="py-op">=</tt> <tt id="link-102" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-102', 'item', 'link-3');">item</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-103', 'keys', 'link-82');">keys</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt id="link-104" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-104', 'keys', 'link-82');">keys</a></tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="Bio.PDB.Residue.DisorderedResidue.sort
Bio.PDB.Residue.Residue.sort
Bio.Sequencing.Ace.ACEFileRecord.sort" class="py-name" href="#" onclick="return doclink('link-105', 'sort', 'link-83');">sort</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">subitem</tt> <tt class="py-keyword">in</tt> <tt id="link-106" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-106', 'keys', 'link-82');">keys</a></tt><tt class="py-op">:</tt> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%skey is %s\n'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt class="py-name">indent</tt><tt class="py-op">,</tt> <tt class="py-name">subitem</tt> <tt class="py-op">)</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="Bio.LocusLink.Record.print_item
Bio.LocusLink.web_parse.Record.print_item" class="py-name" href="#" onclick="return doclink('link-107', 'print_item', 'link-86');">print_item</a></tt><tt class="py-op">(</tt> <tt id="link-108" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-108', 'item', 'link-3');">item</a></tt><tt class="py-op">[</tt> <tt class="py-name">subitem</tt> <tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">level</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> <tt class="py-op">)</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt><tt class="py-op">(</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt id="link-109" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-109', 'item', 'link-3');">item</a></tt><tt class="py-op">,</tt> <tt class="py-name">dict</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt id="link-110" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-110', 'keys', 'link-82');">keys</a></tt> <tt class="py-op">=</tt> <tt id="link-111" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-111', 'item', 'link-3');">item</a></tt><tt class="py-op">.</tt><tt id="link-112" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-112', 'keys', 'link-82');">keys</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt id="link-113" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-113', 'keys', 'link-82');">keys</a></tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="Bio.PDB.Residue.DisorderedResidue.sort
Bio.PDB.Residue.Residue.sort
Bio.Sequencing.Ace.ACEFileRecord.sort" class="py-name" href="#" onclick="return doclink('link-114', 'sort', 'link-83');">sort</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">subitem</tt> <tt class="py-keyword">in</tt> <tt id="link-115" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-115', 'keys', 'link-82');">keys</a></tt><tt class="py-op">:</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%skey is %s\n'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt class="py-name">indent</tt><tt class="py-op">,</tt> <tt class="py-name">subitem</tt> <tt class="py-op">)</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="Bio.LocusLink.Record.print_item
Bio.LocusLink.web_parse.Record.print_item" class="py-name" href="#" onclick="return doclink('link-116', 'print_item', 'link-86');">print_item</a></tt><tt class="py-op">(</tt> <tt id="link-117" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-117', 'item', 'link-3');">item</a></tt><tt class="py-op">[</tt> <tt class="py-name">subitem</tt> <tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">level</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> <tt class="py-op">)</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt class="py-name">indent</tt><tt class="py-op">,</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt> <tt id="link-118" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-118', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">out</tt> </tt>
</div></div><a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser"></a><div id="LocusLinkParser-def"><a name="L202"></a><tt class="py-lineno">202</tt> <a class="py-toggle" href="#" id="LocusLinkParser-toggle" onclick="return toggle('LocusLinkParser');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a><tt class="py-op">(</tt> <tt class="py-base-class">sgmllib</tt><tt class="py-op">.</tt><tt class="py-base-class">SGMLParser</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="LocusLinkParser-expanded"><a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.reset"></a><div id="LocusLinkParser.reset-def"><a name="L204"></a><tt class="py-lineno">204</tt> <a class="py-toggle" href="#" id="LocusLinkParser.reset-toggle" onclick="return toggle('LocusLinkParser.reset');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#reset">reset</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.reset-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.reset-expanded"><a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-name">sgmllib</tt><tt class="py-op">.</tt><tt class="py-name">SGMLParser</tt><tt class="py-op">.</tt><tt id="link-119" class="py-name" targets="Method Bio.Blast.NCBIXML.BlastParser.reset()=Bio.Blast.NCBIXML.BlastParser-class.html#reset,Method Bio.InterPro.InterProParser.reset()=Bio.InterPro.InterProParser-class.html#reset,Method Bio.LocusLink.web_parse.LocusLinkParser.reset()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#reset,Method Bio.Ndb.NdbParser.reset()=Bio.Ndb.NdbParser-class.html#reset,Method Bio.NetCatch.ExtractUrls.reset()=Bio.NetCatch.ExtractUrls-class.html#reset"><a title="Bio.Blast.NCBIXML.BlastParser.reset
Bio.InterPro.InterProParser.reset
Bio.LocusLink.web_parse.LocusLinkParser.reset
Bio.Ndb.NdbParser.reset
Bio.NetCatch.ExtractUrls.reset" class="py-name" href="#" onclick="return doclink('link-119', 'reset', 'link-119');">reset</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt> <tt class="py-op">)</tt> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-120" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.text()=Bio.EUtils.POM.ElementNode-class.html#text,Method Bio.Prosite.Prodoc._RecordConsumer.text()=Bio.Prosite.Prodoc._RecordConsumer-class.html#text,Variable Martel.test.test_Iterator.text=Martel.test.test_Iterator-module.html#text,Variable Martel.test.test_ParseRecords.text=Martel.test.test_ParseRecords-module.html#text"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-120', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-121" class="py-name" targets="Variable Bio.Emboss.primer3_format.record=Bio.Emboss.primer3_format-module.html#record,Variable Bio.Emboss.primersearch_format.record=Bio.Emboss.primersearch_format-module.html#record,Method Bio.GFF.Feature.record()=Bio.GFF.Feature-class.html#record,Variable Bio.LocusLink.web_parse.record=Bio.LocusLink.web_parse-module.html#record,Variable Bio.Ndb.record=Bio.Ndb-module.html#record,Function Bio.Std.record()=Bio.Std-module.html#record,Variable Bio.expressions.blocks.record=Bio.expressions.blocks-module.html#record,Variable Bio.expressions.embl.embl65.record=Bio.expressions.embl.embl65-module.html#record,Variable Bio.expressions.fasta.record=Bio.expressions.fasta-module.html#record,Variable Bio.expressions.genbank.record=Bio.expressions.genbank-module.html#record,Variable Bio.expressions.hmmpfam.record=Bio.expressions.hmmpfam-module.html#record,Variable Bio.expressions.swissprot.ipi.record=Bio.expressions.swissprot.ipi-module.html#record,Variable Bio.expressions.swissprot.speclist.record=Bio.expressions.swissprot.speclist-module.html#record,Variable Bio.expressions.swissprot.sprot38.record=Bio.expressions.swissprot.sprot38-module.html#record,Variable Bio.expressions.swissprot.sprot40.record=Bio.expressions.swissprot.sprot40-module.html#record,Variable Martel.test.test_swissprot38.record=Martel.test.test_swissprot38-module.html#record,Variable Martel.test.testformats.swissprot38.record=Martel.test.testformats.swissprot38-module.html#record"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-121', 'record', 'link-121');">record</a></tt> <tt class="py-op">=</tt> <tt id="link-122" class="py-name" targets="Module Bio.Blast.Record=Bio.Blast.Record-module.html,Module Bio.CDD.Record=Bio.CDD.Record-module.html,Class Bio.CDD.Record.Record=Bio.CDD.Record.Record-class.html,Class Bio.Cluster.Record=Bio.Cluster.Record-class.html,Class Bio.Compass.Record=Bio.Compass.Record-class.html,Module Bio.ECell.Record=Bio.ECell.Record-module.html,Class Bio.ECell.Record.Record=Bio.ECell.Record.Record-class.html,Class Bio.Fasta.Record=Bio.Fasta.Record-class.html,Module Bio.GenBank.Record=Bio.GenBank.Record-module.html,Class Bio.GenBank.Record.Record=Bio.GenBank.Record.Record-class.html,Module Bio.Geo.Record=Bio.Geo.Record-module.html,Class Bio.Geo.Record.Record=Bio.Geo.Record.Record-class.html,Class Bio.Gobase.Record=Bio.Gobase.Record-class.html,Module Bio.IntelliGenetics.Record=Bio.IntelliGenetics.Record-module.html,Class Bio.IntelliGenetics.Record.Record=Bio.IntelliGenetics.Record.Record-class.html,Class Bio.InterPro.Record=Bio.InterPro.Record-class.html,Class Bio.KEGG.Compound.Record=Bio.KEGG.Compound.Record-class.html,Class Bio.KEGG.Enzyme.Record=Bio.KEGG.Enzyme.Record-class.html,Class Bio.LocusLink.Record=Bio.LocusLink.Record-class.html,Class Bio.LocusLink.web_parse.Record=Bio.LocusLink.web_parse.Record-class.html,Class Bio.Medline.Record=Bio.Medline.Record-class.html,Module Bio.MetaTool.Record=Bio.MetaTool.Record-module.html,Class Bio.MetaTool.Record.Record=Bio.MetaTool.Record.Record-class.html,Module Bio.NBRF.Record=Bio.NBRF.Record-module.html,Class Bio.NBRF.Record.Record=Bio.NBRF.Record.Record-class.html,Class Bio.Ndb.Record=Bio.Ndb.Record-class.html,Class Bio.PopGen.FDist.Record=Bio.PopGen.FDist.Record-class.html,Class Bio.PopGen.GenePop.Record=Bio.PopGen.GenePop.Record-class.html,Class Bio.Prosite.Prodoc.Record=Bio.Prosite.Prodoc.Record-class.html,Class Bio.Prosite.Record=Bio.Prosite.Record-class.html,Class Bio.Rebase.Record=Bio.Rebase.Record-class.html,Class Bio.SCOP.Cla.Record=Bio.SCOP.Cla.Record-class.html,Class Bio.SCOP.Des.Record=Bio.SCOP.Des.Record-class.html,Class Bio.SCOP.Dom.Record=Bio.SCOP.Dom.Record-class.html,Class Bio.SCOP.Hie.Record=Bio.SCOP.Hie.Record-class.html,Module Bio.Saf.Record=Bio.Saf.Record-module.html,Class Bio.Saf.Record.Record=Bio.Saf.Record.Record-class.html,Class Bio.Sequencing.Phd.Record=Bio.Sequencing.Phd.Record-class.html,Class Bio.SwissProt.KeyWList.Record=Bio.SwissProt.KeyWList.Record-class.html,Class Bio.SwissProt.SProt.Record=Bio.SwissProt.SProt.Record-class.html"><a title="Bio.Blast.Record
Bio.CDD.Record
Bio.CDD.Record.Record
Bio.Cluster.Record
Bio.Compass.Record
Bio.ECell.Record
Bio.ECell.Record.Record
Bio.Fasta.Record
Bio.GenBank.Record
Bio.GenBank.Record.Record
Bio.Geo.Record
Bio.Geo.Record.Record
Bio.Gobase.Record
Bio.IntelliGenetics.Record
Bio.IntelliGenetics.Record.Record
Bio.InterPro.Record
Bio.KEGG.Compound.Record
Bio.KEGG.Enzyme.Record
Bio.LocusLink.Record
Bio.LocusLink.web_parse.Record
Bio.Medline.Record
Bio.MetaTool.Record
Bio.MetaTool.Record.Record
Bio.NBRF.Record
Bio.NBRF.Record.Record
Bio.Ndb.Record
Bio.PopGen.FDist.Record
Bio.PopGen.GenePop.Record
Bio.Prosite.Prodoc.Record
Bio.Prosite.Record
Bio.Rebase.Record
Bio.SCOP.Cla.Record
Bio.SCOP.Des.Record
Bio.SCOP.Dom.Record
Bio.SCOP.Hie.Record
Bio.Saf.Record
Bio.Saf.Record.Record
Bio.Sequencing.Phd.Record
Bio.SwissProt.KeyWList.Record
Bio.SwissProt.SProt.Record" class="py-name" href="#" onclick="return doclink('link-122', 'Record', 'link-122');">Record</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'undefined'</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'undefined'</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">local_title</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-123" class="py-name" targets="Variable Bio.EUtils.Datatypes.FieldNotFound.category=Bio.EUtils.Datatypes.FieldNotFound-class.html#category,Variable Bio.EUtils.Datatypes.OutputMessage.category=Bio.EUtils.Datatypes.OutputMessage-class.html#category,Variable Bio.EUtils.Datatypes.PhraseIgnored.category=Bio.EUtils.Datatypes.PhraseIgnored-class.html#category,Variable Bio.EUtils.Datatypes.PhraseNotFound.category=Bio.EUtils.Datatypes.PhraseNotFound-class.html#category,Variable Bio.EUtils.Datatypes.QuotedPhraseNotFound.category=Bio.EUtils.Datatypes.QuotedPhraseNotFound-class.html#category"><a title="Bio.EUtils.Datatypes.FieldNotFound.category
Bio.EUtils.Datatypes.OutputMessage.category
Bio.EUtils.Datatypes.PhraseIgnored.category
Bio.EUtils.Datatypes.PhraseNotFound.category
Bio.EUtils.Datatypes.QuotedPhraseNotFound.category" class="py-name" href="#" onclick="return doclink('link-123', 'category', 'link-123');">category</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">context_chain</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state_dict</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">'nomenclature'</tt> <tt class="py-op">:</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt> <tt class="py-op">:</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-string">'function'</tt> <tt class="py-op">:</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-string">'relationships'</tt> <tt class="py-op">:</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-string">'locus'</tt> <tt class="py-op">:</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-string">'map'</tt> <tt class="py-op">:</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-string">'refseq'</tt> <tt class="py-op">:</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-string">'genbank'</tt> <tt class="py-op">:</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-string">'external'</tt> <tt class="py-op">:</tt> <tt class="py-string">'external_annotation'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-string">'additional'</tt> <tt class="py-op">:</tt> <tt class="py-string">'additional_links'</tt> \ </tt>
<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
</div><a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.parse"></a><div id="LocusLinkParser.parse-def"><a name="L228"></a><tt class="py-lineno">228</tt> <a class="py-toggle" href="#" id="LocusLinkParser.parse-toggle" onclick="return toggle('LocusLinkParser.parse');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#parse">parse</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.parse-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.parse-expanded"><a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="Bio.Blast.NCBIXML.BlastParser.reset
Bio.InterPro.InterProParser.reset
Bio.LocusLink.web_parse.LocusLinkParser.reset
Bio.Ndb.NdbParser.reset
Bio.NetCatch.ExtractUrls.reset" class="py-name" href="#" onclick="return doclink('link-124', 'reset', 'link-119');">reset</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-125" class="py-name" targets="Method Bio.Affy.CelFile.CelScanner.feed()=Bio.Affy.CelFile.CelScanner-class.html#feed,Method Bio.AlignAce.Scanner.AlignAceScanner.feed()=Bio.AlignAce.Scanner.AlignAceScanner-class.html#feed,Method Bio.AlignAce.Scanner.CompareAceScanner.feed()=Bio.AlignAce.Scanner.CompareAceScanner-class.html#feed,Method Bio.Blast.NCBIStandalone._Scanner.feed()=Bio.Blast.NCBIStandalone._Scanner-class.html#feed,Method Bio.Blast.NCBIWWW._Scanner.feed()=Bio.Blast.NCBIWWW._Scanner-class.html#feed,Method Bio.CDD._Scanner.feed()=Bio.CDD._Scanner-class.html#feed,Method Bio.Compass._Scanner.feed()=Bio.Compass._Scanner-class.html#feed,Method Bio.ECell._Scanner.feed()=Bio.ECell._Scanner-class.html#feed,Method Bio.Emboss.Primer._Primer3Scanner.feed()=Bio.Emboss.Primer._Primer3Scanner-class.html#feed,Method Bio.Emboss.Primer._PrimerSearchScanner.feed()=Bio.Emboss.Primer._PrimerSearchScanner-class.html#feed,Method Bio.Enzyme._Scanner.feed()=Bio.Enzyme._Scanner-class.html#feed,Method Bio.GenBank.Scanner.InsdcScanner.feed()=Bio.GenBank.Scanner.InsdcScanner-class.html#feed,Method Bio.Gobase._Scanner.feed()=Bio.Gobase._Scanner-class.html#feed,Method Bio.IntelliGenetics._Scanner.feed()=Bio.IntelliGenetics._Scanner-class.html#feed,Method Bio.InterPro.InterProParser.feed()=Bio.InterPro.InterProParser-class.html#feed,Method Bio.LocusLink._Scanner.feed()=Bio.LocusLink._Scanner-class.html#feed,Method Bio.LocusLink.web_parse.LocusLinkParser.feed()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#feed,Method Bio.MEME.Parser._MASTScanner.feed()=Bio.MEME.Parser._MASTScanner-class.html#feed,Method Bio.MEME.Parser._MEMEScanner.feed()=Bio.MEME.Parser._MEMEScanner-class.html#feed,Method Bio.Medline._Scanner.feed()=Bio.Medline._Scanner-class.html#feed,Method Bio.MetaTool._Scanner.feed()=Bio.MetaTool._Scanner-class.html#feed,Method Bio.NBRF._Scanner.feed()=Bio.NBRF._Scanner-class.html#feed,Method Bio.Ndb.NdbParser.feed()=Bio.Ndb.NdbParser-class.html#feed,Method Bio.NetCatch.ExtractUrls.feed()=Bio.NetCatch.ExtractUrls-class.html#feed,Method Bio.PopGen.FDist._Scanner.feed()=Bio.PopGen.FDist._Scanner-class.html#feed,Method Bio.PopGen.GenePop._Scanner.feed()=Bio.PopGen.GenePop._Scanner-class.html#feed,Method Bio.Prosite.Prodoc._Scanner.feed()=Bio.Prosite.Prodoc._Scanner-class.html#feed,Method Bio.Prosite._Scanner.feed()=Bio.Prosite._Scanner-class.html#feed,Method Bio.Rebase._Scanner.feed()=Bio.Rebase._Scanner-class.html#feed,Method Bio.Saf._Scanner.feed()=Bio.Saf._Scanner-class.html#feed,Method Bio.Sequencing.Ace._Scanner.feed()=Bio.Sequencing.Ace._Scanner-class.html#feed,Method Bio.Sequencing.Phd._Scanner.feed()=Bio.Sequencing.Phd._Scanner-class.html#feed,Method Bio.SwissProt.KeyWList._Scanner.feed()=Bio.SwissProt.KeyWList._Scanner-class.html#feed,Method Bio.SwissProt.SProt._Scanner.feed()=Bio.SwissProt.SProt._Scanner-class.html#feed,Method Bio.UniGene._Scanner.feed()=Bio.UniGene._Scanner-class.html#feed"><a title="Bio.Affy.CelFile.CelScanner.feed
Bio.AlignAce.Scanner.AlignAceScanner.feed
Bio.AlignAce.Scanner.CompareAceScanner.feed
Bio.Blast.NCBIStandalone._Scanner.feed
Bio.Blast.NCBIWWW._Scanner.feed
Bio.CDD._Scanner.feed
Bio.Compass._Scanner.feed
Bio.ECell._Scanner.feed
Bio.Emboss.Primer._Primer3Scanner.feed
Bio.Emboss.Primer._PrimerSearchScanner.feed
Bio.Enzyme._Scanner.feed
Bio.GenBank.Scanner.InsdcScanner.feed
Bio.Gobase._Scanner.feed
Bio.IntelliGenetics._Scanner.feed
Bio.InterPro.InterProParser.feed
Bio.LocusLink._Scanner.feed
Bio.LocusLink.web_parse.LocusLinkParser.feed
Bio.MEME.Parser._MASTScanner.feed
Bio.MEME.Parser._MEMEScanner.feed
Bio.Medline._Scanner.feed
Bio.MetaTool._Scanner.feed
Bio.NBRF._Scanner.feed
Bio.Ndb.NdbParser.feed
Bio.NetCatch.ExtractUrls.feed
Bio.PopGen.FDist._Scanner.feed
Bio.PopGen.GenePop._Scanner.feed
Bio.Prosite.Prodoc._Scanner.feed
Bio.Prosite._Scanner.feed
Bio.Rebase._Scanner.feed
Bio.Saf._Scanner.feed
Bio.Sequencing.Ace._Scanner.feed
Bio.Sequencing.Phd._Scanner.feed
Bio.SwissProt.KeyWList._Scanner.feed
Bio.SwissProt.SProt._Scanner.feed
Bio.UniGene._Scanner.feed" class="py-name" href="#" onclick="return doclink('link-125', 'feed', 'link-125');">feed</a></tt><tt class="py-op">(</tt> <tt id="link-126" class="py-name" targets="Variable Bio.LocusLink.web_parse.handle=Bio.LocusLink.web_parse-module.html#handle,Variable Bio.Ndb.handle=Bio.Ndb-module.html#handle"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-126', 'handle', 'link-126');">handle</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-127" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-127', 'record', 'link-121');">record</a></tt> </tt>
</div><a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"><tt class="py-comment">#</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Assumes an empty line between records</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#</tt> </tt>
<a name="LocusLinkParser.feed"></a><div id="LocusLinkParser.feed-def"><a name="L236"></a><tt class="py-lineno">236</tt> <a class="py-toggle" href="#" id="LocusLinkParser.feed-toggle" onclick="return toggle('LocusLinkParser.feed');">-</a><tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#feed">feed</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.feed-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.feed-expanded"><a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt id="link-128" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-128', 'handle', 'link-126');">handle</a></tt><tt class="py-op">,</tt> <tt id="link-129" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-129', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-130', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-131" class="py-name" targets="Class Bio.File.UndoHandle=Bio.File.UndoHandle-class.html"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-131', 'UndoHandle', 'link-131');">UndoHandle</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-name">uhandle</tt> <tt class="py-op">=</tt> <tt id="link-132" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-132', 'handle', 'link-126');">handle</a></tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-name">uhandle</tt> <tt class="py-op">=</tt> <tt id="link-133" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-133', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-134', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-135" class="py-name"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-135', 'UndoHandle', 'link-131');">UndoHandle</a></tt><tt class="py-op">(</tt><tt id="link-136" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-136', 'handle', 'link-126');">handle</a></tt><tt class="py-op">)</tt> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt id="link-137" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-137', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">uhandle</tt><tt class="py-op">.</tt><tt id="link-138" class="py-name" targets="Method Bio.EUtils.ReseekFile.ReseekFile.readline()=Bio.EUtils.ReseekFile.ReseekFile-class.html#readline,Method Bio.File.SGMLHandle.readline()=Bio.File.SGMLHandle-class.html#readline,Method Bio.File.UndoHandle.readline()=Bio.File.UndoHandle-class.html#readline,Method Bio.SGMLExtractor.SGMLExtractorHandle.readline()=Bio.SGMLExtractor.SGMLExtractorHandle-class.html#readline"><a title="Bio.EUtils.ReseekFile.ReseekFile.readline
Bio.File.SGMLHandle.readline
Bio.File.UndoHandle.readline
Bio.SGMLExtractor.SGMLExtractorHandle.readline" class="py-name" href="#" onclick="return doclink('link-138', 'readline', 'link-138');">readline</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">line</tt><tt class="py-op">:</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt id="link-139" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-139', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt id="link-140" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-140', 'text', 'link-120');">text</a></tt> <tt class="py-op">+</tt> <tt class="py-string">' '</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-name">sgmllib</tt><tt class="py-op">.</tt><tt class="py-name">SGMLParser</tt><tt class="py-op">.</tt><tt id="link-141" class="py-name"><a title="Bio.Affy.CelFile.CelScanner.feed
Bio.AlignAce.Scanner.AlignAceScanner.feed
Bio.AlignAce.Scanner.CompareAceScanner.feed
Bio.Blast.NCBIStandalone._Scanner.feed
Bio.Blast.NCBIWWW._Scanner.feed
Bio.CDD._Scanner.feed
Bio.Compass._Scanner.feed
Bio.ECell._Scanner.feed
Bio.Emboss.Primer._Primer3Scanner.feed
Bio.Emboss.Primer._PrimerSearchScanner.feed
Bio.Enzyme._Scanner.feed
Bio.GenBank.Scanner.InsdcScanner.feed
Bio.Gobase._Scanner.feed
Bio.IntelliGenetics._Scanner.feed
Bio.InterPro.InterProParser.feed
Bio.LocusLink._Scanner.feed
Bio.LocusLink.web_parse.LocusLinkParser.feed
Bio.MEME.Parser._MASTScanner.feed
Bio.MEME.Parser._MEMEScanner.feed
Bio.Medline._Scanner.feed
Bio.MetaTool._Scanner.feed
Bio.NBRF._Scanner.feed
Bio.Ndb.NdbParser.feed
Bio.NetCatch.ExtractUrls.feed
Bio.PopGen.FDist._Scanner.feed
Bio.PopGen.GenePop._Scanner.feed
Bio.Prosite.Prodoc._Scanner.feed
Bio.Prosite._Scanner.feed
Bio.Rebase._Scanner.feed
Bio.Saf._Scanner.feed
Bio.Sequencing.Ace._Scanner.feed
Bio.Sequencing.Phd._Scanner.feed
Bio.SwissProt.KeyWList._Scanner.feed
Bio.SwissProt.SProt._Scanner.feed
Bio.UniGene._Scanner.feed" class="py-name" href="#" onclick="return doclink('link-141', 'feed', 'link-125');">feed</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-142" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-142', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.get_text"></a><div id="LocusLinkParser.get_text-def"><a name="L250"></a><tt class="py-lineno">250</tt> <a class="py-toggle" href="#" id="LocusLinkParser.get_text-toggle" onclick="return toggle('LocusLinkParser.get_text');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#get_text">get_text</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.get_text-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.get_text-expanded"><a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt id="link-143" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-143', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-144', 'text', 'link-120');">text</a></tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-145" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-145', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-146" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-146', 'text', 'link-120');">text</a></tt> </tt>
</div><a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.handle_comment"></a><div id="LocusLinkParser.handle_comment-def"><a name="L255"></a><tt class="py-lineno">255</tt> <a class="py-toggle" href="#" id="LocusLinkParser.handle_comment-toggle" onclick="return toggle('LocusLinkParser.handle_comment');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#handle_comment">handle_comment</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">comment</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.handle_comment-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.handle_comment-expanded"><a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt id="link-147" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.comment()=Bio.EUtils.POM.ElementNode-class.html#comment,Method Bio.Enzyme._RecordConsumer.comment()=Bio.Enzyme._RecordConsumer-class.html#comment,Method Bio.GenBank._FeatureConsumer.comment()=Bio.GenBank._FeatureConsumer-class.html#comment,Method Bio.GenBank._RecordConsumer.comment()=Bio.GenBank._RecordConsumer-class.html#comment,Method Bio.IntelliGenetics._RecordConsumer.comment()=Bio.IntelliGenetics._RecordConsumer-class.html#comment,Method Bio.NBRF._RecordConsumer.comment()=Bio.NBRF._RecordConsumer-class.html#comment,Method Bio.PopGen.GenePop._RecordConsumer.comment()=Bio.PopGen.GenePop._RecordConsumer-class.html#comment,Method Bio.Prosite._RecordConsumer.comment()=Bio.Prosite._RecordConsumer-class.html#comment,Method Bio.SwissProt.SProt._RecordConsumer.comment()=Bio.SwissProt.SProt._RecordConsumer-class.html#comment,Method Bio.SwissProt.SProt._SequenceConsumer.comment()=Bio.SwissProt.SProt._SequenceConsumer-class.html#comment,Variable Bio.expressions.swissprot.sprot38.comment=Bio.expressions.swissprot.sprot38-module.html#comment,Variable Martel.test.test_swissprot38.comment=Martel.test.test_swissprot38-module.html#comment,Variable Martel.test.testformats.swissprot38.comment=Martel.test.testformats.swissprot38-module.html#comment"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-147', 'comment', 'link-147');">comment</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt> <tt class="py-string">'-'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt id="link-148" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-148', 'comment', 'link-147');">comment</a></tt> <tt class="py-op">=</tt> <tt id="link-149" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-149', 'comment', 'link-147');">comment</a></tt><tt class="py-op">[</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-op">]</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt id="link-150" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-150', 'comment', 'link-147');">comment</a></tt> <tt class="py-op">=</tt> <tt id="link-151" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-151', 'comment', 'link-147');">comment</a></tt><tt class="py-op">.</tt><tt id="link-152" class="py-name" targets="Class Bio.EUtils.DTDs.LinkOut.strip=Bio.EUtils.DTDs.LinkOut.strip-class.html,Method Bio.File.SGMLStripper.strip()=Bio.File.SGMLStripper-class.html#strip,Method Bio.SGMLExtractor.SGMLExtractor.strip()=Bio.SGMLExtractor.SGMLExtractor-class.html#strip"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-152', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt id="link-153" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-153', 'comment', 'link-147');">comment</a></tt> <tt class="py-op">=</tt> <tt id="link-154" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-154', 'comment', 'link-147');">comment</a></tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt id="link-155" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-155', 'keys', 'link-82');">keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state_dict</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-156', 'keys', 'link-82');">keys</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-157" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-157', 'key', 'link-21');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-158" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-158', 'keys', 'link-82');">keys</a></tt><tt class="py-op">:</tt> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-159" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-159', 'comment', 'link-147');">comment</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt> <tt id="link-160" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-160', 'key', 'link-21');">key</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-161" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-161', 'key', 'link-21');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"><tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-162" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-162', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-163" class="py-name"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-163', 'open_dict', 'link-62');">open_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-164" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-164', 'key', 'link-21');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-165" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-165', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-166" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-166', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-167" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-167', 'key', 'link-21');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'refseq'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-168', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-169" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-169', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt id="link-170" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-170', 'key', 'link-21');">key</a></tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'local_title'</tt> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'undefined'</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-171" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-171', 'key', 'link-21');">key</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_category'</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_key'</tt> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-172" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-172', 'comment', 'link-147');">comment</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt> <tt class="py-string">'end'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-173" class="py-name" targets="Function Bio.LocusLink.web_parse.is_substring()=Bio.LocusLink.web_parse-module.html#is_substring"><a title="Bio.LocusLink.web_parse.is_substring" class="py-name" href="#" onclick="return doclink('link-173', 'is_substring', 'link-173');">is_substring</a></tt><tt class="py-op">(</tt> <tt id="link-174" class="py-name"><a title="Bio.EUtils.POM.ElementNode.comment
Bio.Enzyme._RecordConsumer.comment
Bio.GenBank._FeatureConsumer.comment
Bio.GenBank._RecordConsumer.comment
Bio.IntelliGenetics._RecordConsumer.comment
Bio.NBRF._RecordConsumer.comment
Bio.PopGen.GenePop._RecordConsumer.comment
Bio.Prosite._RecordConsumer.comment
Bio.SwissProt.SProt._RecordConsumer.comment
Bio.SwissProt.SProt._SequenceConsumer.comment
Bio.expressions.swissprot.sprot38.comment
Martel.test.test_swissprot38.comment
Martel.test.testformats.swissprot38.comment" class="py-name" href="#" onclick="return doclink('link-174', 'comment', 'link-147');">comment</a></tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-175', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-176" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-176', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'function'</tt><tt class="py-op">:</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-177', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-178" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-178', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-179" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-179', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-180" class="py-name"><a title="Bio.LocusLink.web_parse.close_dict" class="py-name" href="#" onclick="return doclink('link-180', 'close_dict', 'link-64');">close_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-181" class="py-name" targets="Method Bio.LocusLink.web_parse.LocusLinkParser.process_structure_stack()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#process_structure_stack"><a title="Bio.LocusLink.web_parse.LocusLinkParser.process_structure_stack" class="py-name" href="#" onclick="return doclink('link-181', 'process_structure_stack', 'link-181');">process_structure_stack</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt id="link-182" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-182', 'item', 'link-3');">item</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-183" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-183', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt id="link-184" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-184', 'item', 'link-3');">item</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'Not Available'</tt> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-185" class="py-name" targets="Function Bio.LocusLink.web_parse.is_token()=Bio.LocusLink.web_parse-module.html#is_token"><a title="Bio.LocusLink.web_parse.is_token" class="py-name" href="#" onclick="return doclink('link-185', 'is_token', 'link-185');">is_token</a></tt><tt class="py-op">(</tt> <tt id="link-186" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-186', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-keyword">break</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt id="link-187" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-187', 'key', 'link-21');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-188', 'record', 'link-121');">record</a></tt><tt class="py-op">[</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state_dict</tt><tt class="py-op">[</tt> <tt id="link-189" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-189', 'key', 'link-21');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-190" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-190', 'item', 'link-3');">item</a></tt> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'undefined'</tt> </tt>
</div><a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> </tt>
<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.handle_data"></a><div id="LocusLinkParser.handle_data-def"><a name="L298"></a><tt class="py-lineno">298</tt> <a class="py-toggle" href="#" id="LocusLinkParser.handle_data-toggle" onclick="return toggle('LocusLinkParser.handle_data');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#handle_data">handle_data</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">newtext</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.handle_data-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.handle_data-expanded"><a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-name">newtext</tt> <tt class="py-op">=</tt> <tt class="py-name">newtext</tt><tt class="py-op">.</tt><tt id="link-191" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-191', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-192" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-192', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-193" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-193', 'text', 'link-120');">text</a></tt> <tt class="py-op">+</tt> <tt class="py-name">newtext</tt> </tt>
</div><a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.start_a"></a><div id="LocusLinkParser.start_a-def"><a name="L302"></a><tt class="py-lineno">302</tt> <a class="py-toggle" href="#" id="LocusLinkParser.start_a-toggle" onclick="return toggle('LocusLinkParser.start_a');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_a">start_a</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.start_a-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.start_a-expanded"><a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-194" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-194', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">)</tt> </tt>
<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_a'</tt> </tt>
<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt class="py-name">attr_dict</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-195" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-195', 'key', 'link-21');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-keyword">in</tt> <tt id="link-196" class="py-name" targets="Variable Martel.Time.attrs=Martel.Time-module.html#attrs"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-196', 'attrs', 'link-196');">attrs</a></tt><tt class="py-op">:</tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-name">attr_dict</tt><tt class="py-op">[</tt> <tt id="link-197" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-197', 'key', 'link-21');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">val</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">,</tt> <tt class="py-string">'unpaired_key'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">attr_dict</tt><tt class="py-op">.</tt><tt id="link-198" class="py-name"><a title="Bio.Crystal.Crystal.has_key
Bio.EUtils.POM.ElementNode.has_key
Bio.GenBank.NCBIDictionary.has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key
Bio.PDB.FragmentMapper'.FragmentMapper.has_key
Bio.Prosite.ExPASyDictionary.has_key
Bio.Prosite.Prodoc.ExPASyDictionary.has_key
Bio.PubMed.Dictionary.has_key
Bio.SwissProt.SProt.ExPASyDictionary.has_key
Martel.Parser.MartelAttributeList.has_key" class="py-name" href="#" onclick="return doclink('link-198', 'has_key', 'link-20');">has_key</a></tt><tt class="py-op">(</tt> <tt class="py-string">'href'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt class="py-name">href</tt> <tt class="py-op">=</tt> <tt class="py-name">attr_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'href'</tt> <tt class="py-op">]</tt> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-199', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-200" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-200', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-201" class="py-name" targets="Class Bio.EUtils.DTDs.LinkOut.Url=Bio.EUtils.DTDs.LinkOut.Url-class.html,Class Bio.EUtils.DTDs.eLink_020511.Url=Bio.EUtils.DTDs.eLink_020511.Url-class.html,Class Bio.LocusLink.web_parse.Url=Bio.LocusLink.web_parse.Url-class.html,Class Bio.NetCatch.Url=Bio.NetCatch.Url-class.html"><a title="Bio.EUtils.DTDs.LinkOut.Url
Bio.EUtils.DTDs.eLink_020511.Url
Bio.LocusLink.web_parse.Url
Bio.NetCatch.Url" class="py-name" href="#" onclick="return doclink('link-201', 'Url', 'link-201');">Url</a></tt><tt class="py-op">(</tt> <tt class="py-name">href</tt><tt class="py-op">,</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'function'</tt><tt class="py-op">:</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">,</tt> <tt class="py-string">'unpaired_key'</tt><tt class="py-op">,</tt> <tt class="py-string">'may_be_val'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">attr_dict</tt><tt class="py-op">.</tt><tt id="link-202" class="py-name"><a title="Bio.Crystal.Crystal.has_key
Bio.EUtils.POM.ElementNode.has_key
Bio.GenBank.NCBIDictionary.has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key
Bio.PDB.FragmentMapper'.FragmentMapper.has_key
Bio.Prosite.ExPASyDictionary.has_key
Bio.Prosite.Prodoc.ExPASyDictionary.has_key
Bio.PubMed.Dictionary.has_key
Bio.SwissProt.SProt.ExPASyDictionary.has_key
Martel.Parser.MartelAttributeList.has_key" class="py-name" href="#" onclick="return doclink('link-202', 'has_key', 'link-20');">has_key</a></tt><tt class="py-op">(</tt> <tt class="py-string">'href'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt class="py-name">href</tt> <tt class="py-op">=</tt> <tt class="py-name">attr_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'href'</tt> <tt class="py-op">]</tt> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-203" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-203', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-204', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-205" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.Url
Bio.EUtils.DTDs.eLink_020511.Url
Bio.LocusLink.web_parse.Url
Bio.NetCatch.Url" class="py-name" href="#" onclick="return doclink('link-205', 'Url', 'link-201');">Url</a></tt><tt class="py-op">(</tt> <tt class="py-name">href</tt><tt class="py-op">,</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> </tt>
<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.end_a"></a><div id="LocusLinkParser.end_a-def"><a name="L325"></a><tt class="py-lineno">325</tt> <a class="py-toggle" href="#" id="LocusLinkParser.end_a-toggle" onclick="return toggle('LocusLinkParser.end_a');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#end_a">end_a</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.end_a-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.end_a-expanded"><a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-206', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">,</tt> <tt class="py-string">'unpaired_key'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt id="link-207" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-207', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-208" class="py-name" targets="Method Bio.EUtils.POM.Comment.get_text()=Bio.EUtils.POM.Comment-class.html#get_text,Method Bio.EUtils.POM.IndentedText.get_text()=Bio.EUtils.POM.IndentedText-class.html#get_text,Method Bio.LocusLink.web_parse.LocusLinkParser.get_text()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#get_text"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-208', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt class="py-name">url</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-209" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-209', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">url</tt><tt class="py-op">,</tt> <tt id="link-210" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.Url
Bio.EUtils.DTDs.eLink_020511.Url
Bio.LocusLink.web_parse.Url
Bio.NetCatch.Url" class="py-name" href="#" onclick="return doclink('link-210', 'Url', 'link-201');">Url</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt class="py-name">url</tt><tt class="py-op">.</tt><tt class="py-name">label</tt> <tt class="py-op">=</tt> <tt id="link-211" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-211', 'text', 'link-120');">text</a></tt> </tt>
<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-212" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-212', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">url</tt> <tt class="py-op">)</tt> </tt>
<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'function'</tt><tt class="py-op">:</tt> </tt>
<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">,</tt> <tt class="py-string">'unpaired_key'</tt><tt class="py-op">,</tt> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"><tt class="py-string">'may_be_val'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt id="link-213" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-213', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-214" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-214', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt class="py-name">url</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-215" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-215', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">url</tt><tt class="py-op">,</tt> <tt id="link-216" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.Url
Bio.EUtils.DTDs.eLink_020511.Url
Bio.LocusLink.web_parse.Url
Bio.NetCatch.Url" class="py-name" href="#" onclick="return doclink('link-216', 'Url', 'link-201');">Url</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt class="py-name">url</tt><tt class="py-op">.</tt><tt class="py-name">label</tt> <tt class="py-op">=</tt> <tt id="link-217" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-217', 'text', 'link-120');">text</a></tt> </tt>
<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-218" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-218', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">url</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.start_b"></a><div id="LocusLinkParser.start_b-def"><a name="L350"></a><tt class="py-lineno">350</tt> <a class="py-toggle" href="#" id="LocusLinkParser.start_b-toggle" onclick="return toggle('LocusLinkParser.start_b');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_b">start_b</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.start_b-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.start_b-expanded"><a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> </tt>
<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-219" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-219', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">)</tt> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_b'</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-220" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-220', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
</div><a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> </tt>
<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"> </tt>
<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.end_b"></a><div id="LocusLinkParser.end_b-def"><a name="L360"></a><tt class="py-lineno">360</tt> <a class="py-toggle" href="#" id="LocusLinkParser.end_b-toggle" onclick="return toggle('LocusLinkParser.end_b');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#end_b">end_b</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.end_b-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.end_b-expanded"><a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-221" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-221', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> <tt id="link-222" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-222', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-223" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-223', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt class="py-name">cols</tt> <tt class="py-op">=</tt> <tt id="link-224" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-224', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-225" class="py-name" targets="Method Bio.Nexus.Trees.Tree.split()=Bio.Nexus.Trees.Tree-class.html#split,Method Bio.Restriction.Restriction.RestrictionBatch.split()=Bio.Restriction.Restriction.RestrictionBatch-class.html#split"><a title="Bio.Nexus.Trees.Tree.split
Bio.Restriction.Restriction.RestrictionBatch.split" class="py-name" href="#" onclick="return doclink('link-225', 'split', 'link-225');">split</a></tt><tt class="py-op">(</tt> <tt class="py-string">':'</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt> <tt class="py-op">)</tt> </tt>
<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt id="link-226" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-226', 'key', 'link-21');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">0</tt> <tt class="py-op">]</tt> </tt>
<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-227" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-227', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">1</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt> </tt>
<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-228" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-228', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-229" class="py-name"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-229', 'open_dict', 'link-62');">open_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_key'</tt> </tt>
<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">:</tt> </tt>
<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-230', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-231" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-231', 'key', 'link-21');">key</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-232" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-232', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-233" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-233', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'skip'</tt> </tt>
<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'additional'</tt><tt class="py-op">:</tt> </tt>
<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-234" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-234', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-235" class="py-name"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-235', 'open_dict', 'link-62');">open_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-236" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-236', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-237" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-237', 'key', 'link-21');">key</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-238" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-238', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-239" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-239', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'unpaired_key'</tt> </tt>
<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'function'</tt><tt class="py-op">:</tt> </tt>
<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">!=</tt> <tt class="py-string">'waiting_key'</tt><tt class="py-op">:</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-240" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-240', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-241" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-241', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-242', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-243" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-243', 'key', 'link-21');">key</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'unpaired_key'</tt> </tt>
<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-244" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-244', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-245" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-245', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-246" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-246', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-247" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-247', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">1</tt> <tt class="py-op">]</tt> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">val</tt><tt class="py-op">.</tt><tt id="link-248" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-248', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-249" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-249', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> </tt>
<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'unpaired_key'</tt> </tt>
<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> </tt>
<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">!=</tt> <tt class="py-string">'waiting_key'</tt><tt class="py-op">:</tt> </tt>
<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-250" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-250', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-251" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-251', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-252" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-252', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-253" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-253', 'key', 'link-21');">key</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-254" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-254', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-255" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-255', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-256" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-256', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-257" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-257', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">1</tt> <tt class="py-op">]</tt> </tt>
<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">val</tt><tt class="py-op">.</tt><tt id="link-258" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-258', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-259" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-259', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> </tt>
<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
</div><a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"> </tt>
<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.start_th"></a><div id="LocusLinkParser.start_th-def"><a name="L414"></a><tt class="py-lineno">414</tt> <a class="py-toggle" href="#" id="LocusLinkParser.start_th-toggle" onclick="return toggle('LocusLinkParser.start_th');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_th">start_th</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.start_th-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.start_th-expanded"><a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> </tt>
<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-260" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-260', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">)</tt> </tt>
<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_th'</tt> </tt>
<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-261" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-261', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_headings'</tt> </tt>
</div><a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> </tt>
<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"> </tt>
<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.end_th"></a><div id="LocusLinkParser.end_th-def"><a name="L426"></a><tt class="py-lineno">426</tt> <a class="py-toggle" href="#" id="LocusLinkParser.end_th-toggle" onclick="return toggle('LocusLinkParser.end_th');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#end_th">end_th</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.end_th-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.end_th-expanded"><a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-262" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-262', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> <tt id="link-263" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-263', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-264" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-264', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt class="py-name">cols</tt> <tt class="py-op">=</tt> <tt id="link-265" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-265', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-266" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-266', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-267" class="py-name"><a title="Bio.Nexus.Trees.Tree.split
Bio.Restriction.Restriction.RestrictionBatch.split" class="py-name" href="#" onclick="return doclink('link-267', 'split', 'link-225');">split</a></tt><tt class="py-op">(</tt> <tt class="py-string">':'</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt> <tt class="py-op">)</tt> </tt>
<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-268" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-268', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-269" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-269', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt> <tt class="py-string">'category'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-270" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-270', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-271" class="py-name"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-271', 'open_dict', 'link-62');">open_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-272" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-272', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">1</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt> </tt>
<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-273" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-273', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-274" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-274', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-275" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-275', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-276" class="py-name"><a title="Bio.LocusLink.web_parse.open_dict" class="py-name" href="#" onclick="return doclink('link-276', 'open_dict', 'link-62');">open_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'found_category'</tt> </tt>
<a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> </tt>
<a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'found_category'</tt><tt class="py-op">,</tt> <tt class="py-string">'may_be_val'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-277" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-277', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-278" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-278', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">!=</tt> <tt class="py-string">'found_category'</tt><tt class="py-op">:</tt> </tt>
<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-279" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-279', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-280" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-280', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"> <tt class="py-name">cols</tt> <tt class="py-op">=</tt> <tt id="link-281" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-281', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-282" class="py-name"><a title="Bio.Nexus.Trees.Tree.split
Bio.Restriction.Restriction.RestrictionBatch.split" class="py-name" href="#" onclick="return doclink('link-282', 'split', 'link-225');">split</a></tt><tt class="py-op">(</tt> <tt class="py-string">':'</tt> <tt class="py-op">)</tt> </tt>
<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-283" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-283', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">0</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt> </tt>
<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-284" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-284', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-285" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-285', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">1</tt> <tt class="py-op">]</tt> </tt>
<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-286" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-286', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-287" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-287', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-288" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-288', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">val</tt> <tt class="py-op">)</tt> </tt>
<a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
<a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'may_be_val'</tt> </tt>
</div><a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> </tt>
<a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line"> </tt>
<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"> </tt>
<a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"> </tt>
<a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.start_table"></a><div id="LocusLinkParser.start_table-def"><a name="L462"></a><tt class="py-lineno">462</tt> <a class="py-toggle" href="#" id="LocusLinkParser.start_table-toggle" onclick="return toggle('LocusLinkParser.start_table');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_table">start_table</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.start_table-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.start_table-expanded"><a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-289" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-289', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">)</tt> </tt>
<a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_table'</tt> </tt>
<a name="L465"></a><tt class="py-lineno">465</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-290" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-290', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">:</tt> </tt>
<a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L468"></a><tt class="py-lineno">468</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'skip'</tt> </tt>
<a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> </tt>
<a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L472"></a><tt class="py-lineno">472</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_key'</tt> </tt>
</div><a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.end_table"></a><div id="LocusLinkParser.end_table-def"><a name="L474"></a><tt class="py-lineno">474</tt> <a class="py-toggle" href="#" id="LocusLinkParser.end_table-toggle" onclick="return toggle('LocusLinkParser.end_table');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#end_table">end_table</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.end_table-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.end_table-expanded"><a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L476"></a><tt class="py-lineno">476</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-291" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-291', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_title'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L480"></a><tt class="py-lineno">480</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'local_contents'</tt> </tt>
<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'additional'</tt><tt class="py-op">:</tt> </tt>
<a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'local_contents'</tt> </tt>
<a name="L484"></a><tt class="py-lineno">484</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'local_contents'</tt> </tt>
<a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_key'</tt> </tt>
<a name="L488"></a><tt class="py-lineno">488</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L489"></a><tt class="py-lineno">489</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-292" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-292', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-293" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-293', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-294" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-294', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-295" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-295', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"> </tt>
<a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">'may_be_val'</tt><tt class="py-op">,</tt> <tt class="py-string">'scan_val'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L497"></a><tt class="py-lineno">497</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-296" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-296', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-297" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-297', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L498"></a><tt class="py-lineno">498</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-298" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-298', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-299" class="py-name"><a title="Bio.LocusLink.web_parse.close_dict" class="py-name" href="#" onclick="return doclink('link-299', 'close_dict', 'link-64');">close_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L499"></a><tt class="py-lineno">499</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-300" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-300', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-301" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-301', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L500"></a><tt class="py-lineno">500</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-302" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-302', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-303" class="py-name"><a title="Bio.LocusLink.web_parse.close_dict" class="py-name" href="#" onclick="return doclink('link-303', 'close_dict', 'link-64');">close_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L501"></a><tt class="py-lineno">501</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_category'</tt> </tt>
</div><a name="L502"></a><tt class="py-lineno">502</tt> <tt class="py-line"> </tt>
<a name="L503"></a><tt class="py-lineno">503</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.start_tr"></a><div id="LocusLinkParser.start_tr-def"><a name="L504"></a><tt class="py-lineno">504</tt> <a class="py-toggle" href="#" id="LocusLinkParser.start_tr-toggle" onclick="return toggle('LocusLinkParser.start_tr');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_tr">start_tr</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.start_tr-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.start_tr-expanded"><a name="L505"></a><tt class="py-lineno">505</tt> <tt class="py-line"> <tt class="py-name">top</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> </tt>
<a name="L506"></a><tt class="py-lineno">506</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-304" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-304', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">)</tt> </tt>
<a name="L507"></a><tt class="py-lineno">507</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">top</tt> <tt class="py-op">==</tt> <tt class="py-string">'open_table_row'</tt><tt class="py-op">:</tt> </tt>
<a name="L508"></a><tt class="py-lineno">508</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L509"></a><tt class="py-lineno">509</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L510"></a><tt class="py-lineno">510</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">,</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L511"></a><tt class="py-lineno">511</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-305" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-305', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-306" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-306', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L512"></a><tt class="py-lineno">512</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'may_be_val'</tt> </tt>
<a name="L513"></a><tt class="py-lineno">513</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-307" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-307', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L514"></a><tt class="py-lineno">514</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_table_row'</tt> </tt>
<a name="L515"></a><tt class="py-lineno">515</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-308" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-308', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L516"></a><tt class="py-lineno">516</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L517"></a><tt class="py-lineno">517</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> </tt>
<a name="L518"></a><tt class="py-lineno">518</tt> <tt class="py-line"><tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L519"></a><tt class="py-lineno">519</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L520"></a><tt class="py-lineno">520</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L521"></a><tt class="py-lineno">521</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-309" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-309', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-310" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-310', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L522"></a><tt class="py-lineno">522</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'map'</tt><tt class="py-op">:</tt> </tt>
<a name="L523"></a><tt class="py-lineno">523</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L524"></a><tt class="py-lineno">524</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L525"></a><tt class="py-lineno">525</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-311" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-311', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-312" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-312', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L526"></a><tt class="py-lineno">526</tt> <tt class="py-line"> </tt>
<a name="L527"></a><tt class="py-lineno">527</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'additional'</tt><tt class="py-op">:</tt> </tt>
<a name="L528"></a><tt class="py-lineno">528</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L529"></a><tt class="py-lineno">529</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L530"></a><tt class="py-lineno">530</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-313" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-313', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-314" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-314', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L531"></a><tt class="py-lineno">531</tt> <tt class="py-line"> </tt>
<a name="L532"></a><tt class="py-lineno">532</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.end_tr"></a><div id="LocusLinkParser.end_tr-def"><a name="L533"></a><tt class="py-lineno">533</tt> <a class="py-toggle" href="#" id="LocusLinkParser.end_tr-toggle" onclick="return toggle('LocusLinkParser.end_tr');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#end_tr">end_tr</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.end_tr-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.end_tr-expanded"><a name="L534"></a><tt class="py-lineno">534</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L535"></a><tt class="py-lineno">535</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-315" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-315', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L536"></a><tt class="py-lineno">536</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L537"></a><tt class="py-lineno">537</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L538"></a><tt class="py-lineno">538</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L539"></a><tt class="py-lineno">539</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> </tt>
<a name="L540"></a><tt class="py-lineno">540</tt> <tt class="py-line"><tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L541"></a><tt class="py-lineno">541</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L542"></a><tt class="py-lineno">542</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-316" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-316', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-317" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-317', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L543"></a><tt class="py-lineno">543</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'unpaired_key'</tt><tt class="py-op">:</tt> </tt>
<a name="L544"></a><tt class="py-lineno">544</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-318" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-318', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-319" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-319', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L545"></a><tt class="py-lineno">545</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'skip'</tt><tt class="py-op">:</tt> </tt>
<a name="L546"></a><tt class="py-lineno">546</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L547"></a><tt class="py-lineno">547</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_headings'</tt><tt class="py-op">:</tt> </tt>
<a name="L548"></a><tt class="py-lineno">548</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L549"></a><tt class="py-lineno">549</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L550"></a><tt class="py-lineno">550</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'unpaired_key'</tt><tt class="py-op">:</tt> </tt>
<a name="L551"></a><tt class="py-lineno">551</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-320" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-320', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-321" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-321', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L552"></a><tt class="py-lineno">552</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-322" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-322', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-323" class="py-name"><a title="Bio.LocusLink.web_parse.close_dict" class="py-name" href="#" onclick="return doclink('link-323', 'close_dict', 'link-64');">close_dict</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L553"></a><tt class="py-lineno">553</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-324" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-324', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-325" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-325', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L554"></a><tt class="py-lineno">554</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L555"></a><tt class="py-lineno">555</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-326" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-326', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-327" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-327', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L556"></a><tt class="py-lineno">556</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L557"></a><tt class="py-lineno">557</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_headings'</tt><tt class="py-op">:</tt> </tt>
<a name="L558"></a><tt class="py-lineno">558</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L559"></a><tt class="py-lineno">559</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'unpaired_key'</tt><tt class="py-op">:</tt> </tt>
<a name="L560"></a><tt class="py-lineno">560</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'may_be_val'</tt> </tt>
<a name="L561"></a><tt class="py-lineno">561</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-328" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-328', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-329" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-329', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L562"></a><tt class="py-lineno">562</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L563"></a><tt class="py-lineno">563</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'may_be_val'</tt> </tt>
<a name="L564"></a><tt class="py-lineno">564</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-330" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-330', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-331" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-331', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L565"></a><tt class="py-lineno">565</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L566"></a><tt class="py-lineno">566</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L567"></a><tt class="py-lineno">567</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L568"></a><tt class="py-lineno">568</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-332" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-332', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-333" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-333', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L569"></a><tt class="py-lineno">569</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'may_be_val'</tt> </tt>
<a name="L570"></a><tt class="py-lineno">570</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'map'</tt><tt class="py-op">:</tt> </tt>
<a name="L571"></a><tt class="py-lineno">571</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L572"></a><tt class="py-lineno">572</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L573"></a><tt class="py-lineno">573</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-334" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-334', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-335" class="py-name"><a title="Bio.LocusLink.web_parse.close_list" class="py-name" href="#" onclick="return doclink('link-335', 'close_list', 'link-60');">close_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L574"></a><tt class="py-lineno">574</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'may_be_val'</tt> </tt>
</div><a name="L575"></a><tt class="py-lineno">575</tt> <tt class="py-line"> </tt>
<a name="L576"></a><tt class="py-lineno">576</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.start_td"></a><div id="LocusLinkParser.start_td-def"><a name="L577"></a><tt class="py-lineno">577</tt> <a class="py-toggle" href="#" id="LocusLinkParser.start_td-toggle" onclick="return toggle('LocusLinkParser.start_td');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_td">start_td</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.start_td-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.start_td-expanded"><a name="L578"></a><tt class="py-lineno">578</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-336" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-336', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">)</tt> </tt>
<a name="L579"></a><tt class="py-lineno">579</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_table_data'</tt> </tt>
<a name="L580"></a><tt class="py-lineno">580</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L581"></a><tt class="py-lineno">581</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L582"></a><tt class="py-lineno">582</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-337" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-337', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L583"></a><tt class="py-lineno">583</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L584"></a><tt class="py-lineno">584</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L585"></a><tt class="py-lineno">585</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-338" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-338', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L586"></a><tt class="py-lineno">586</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'may_be_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L587"></a><tt class="py-lineno">587</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-339" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-339', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-340" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-340', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L588"></a><tt class="py-lineno">588</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
</div><a name="L589"></a><tt class="py-lineno">589</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.end_td"></a><div id="LocusLinkParser.end_td-def"><a name="L590"></a><tt class="py-lineno">590</tt> <a class="py-toggle" href="#" id="LocusLinkParser.end_td-toggle" onclick="return toggle('LocusLinkParser.end_td');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#end_td">end_td</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.end_td-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.end_td-expanded"><a name="L591"></a><tt class="py-lineno">591</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L592"></a><tt class="py-lineno">592</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt><tt class="py-op">.</tt><tt id="link-341" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-341', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L593"></a><tt class="py-lineno">593</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L594"></a><tt class="py-lineno">594</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag</tt> <tt class="py-op">=</tt> <tt class="py-string">'open_html'</tt> </tt>
<a name="L595"></a><tt class="py-lineno">595</tt> <tt class="py-line"> </tt>
<a name="L596"></a><tt class="py-lineno">596</tt> <tt class="py-line"> </tt>
<a name="L597"></a><tt class="py-lineno">597</tt> <tt class="py-line"> </tt>
<a name="L598"></a><tt class="py-lineno">598</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L599"></a><tt class="py-lineno">599</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L600"></a><tt class="py-lineno">600</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L601"></a><tt class="py-lineno">601</tt> <tt class="py-line"> <tt id="link-342" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-342', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-343" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-343', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L602"></a><tt class="py-lineno">602</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-344" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-344', 'text', 'link-120');">text</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L603"></a><tt class="py-lineno">603</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-345" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-345', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-346" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-346', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L604"></a><tt class="py-lineno">604</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'function'</tt><tt class="py-op">:</tt> </tt>
<a name="L605"></a><tt class="py-lineno">605</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L606"></a><tt class="py-lineno">606</tt> <tt class="py-line"> <tt id="link-347" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-347', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-348" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-348', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L607"></a><tt class="py-lineno">607</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-349" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-349', 'text', 'link-120');">text</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L608"></a><tt class="py-lineno">608</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'may_be_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L609"></a><tt class="py-lineno">609</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-350" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-350', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-351" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-351', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L610"></a><tt class="py-lineno">610</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-352" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-352', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-353" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-353', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L611"></a><tt class="py-lineno">611</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L612"></a><tt class="py-lineno">612</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'unpaired_key'</tt><tt class="py-op">,</tt> <tt class="py-string">'scan_val'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L613"></a><tt class="py-lineno">613</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-354" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-354', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-355" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-355', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L614"></a><tt class="py-lineno">614</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'map'</tt><tt class="py-op">:</tt> </tt>
<a name="L615"></a><tt class="py-lineno">615</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L616"></a><tt class="py-lineno">616</tt> <tt class="py-line"> <tt id="link-356" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-356', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-357" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-357', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L617"></a><tt class="py-lineno">617</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-358" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-358', 'text', 'link-120');">text</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L618"></a><tt class="py-lineno">618</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'may_be_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L619"></a><tt class="py-lineno">619</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-359" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-359', 'text', 'link-120');">text</a></tt><tt class="py-op">.</tt><tt id="link-360" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-360', 'strip', 'link-152');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L620"></a><tt class="py-lineno">620</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-361" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-361', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-362" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-362', 'open_list', 'link-58');">open_list</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L621"></a><tt class="py-lineno">621</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'scan_val'</tt> </tt>
<a name="L622"></a><tt class="py-lineno">622</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L623"></a><tt class="py-lineno">623</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-363" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-363', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-364" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-364', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L624"></a><tt class="py-lineno">624</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">:</tt> </tt>
<a name="L625"></a><tt class="py-lineno">625</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt><tt class="py-op">:</tt> </tt>
<a name="L626"></a><tt class="py-lineno">626</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L627"></a><tt class="py-lineno">627</tt> <tt class="py-line"> <tt id="link-365" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-365', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-366" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-366', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L628"></a><tt class="py-lineno">628</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-367" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-367', 'text', 'link-120');">text</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L629"></a><tt class="py-lineno">629</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-368" class="py-name" targets="Method Bio.LocusLink.web_parse.LocusLinkParser.add_text_to_object()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#add_text_to_object"><a title="Bio.LocusLink.web_parse.LocusLinkParser.add_text_to_object" class="py-name" href="#" onclick="return doclink('link-368', 'add_text_to_object', 'link-368');">add_text_to_object</a></tt><tt class="py-op">(</tt> <tt id="link-369" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-369', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L630"></a><tt class="py-lineno">630</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.do_br"></a><div id="LocusLinkParser.do_br-def"><a name="L631"></a><tt class="py-lineno">631</tt> <a class="py-toggle" href="#" id="LocusLinkParser.do_br-toggle" onclick="return toggle('LocusLinkParser.do_br');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#do_br">do_br</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.do_br-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.do_br-expanded"><a name="L632"></a><tt class="py-lineno">632</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L633"></a><tt class="py-lineno">633</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">section_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'local_contents'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L634"></a><tt class="py-lineno">634</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">detail_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'scan_val'</tt><tt class="py-op">:</tt> </tt>
<a name="L635"></a><tt class="py-lineno">635</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-370" class="py-name" targets="Method Bio.LocusLink.web_parse.LocusLinkParser.is_contained_by()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#is_contained_by"><a title="Bio.LocusLink.web_parse.LocusLinkParser.is_contained_by" class="py-name" href="#" onclick="return doclink('link-370', 'is_contained_by', 'link-370');">is_contained_by</a></tt><tt class="py-op">(</tt> <tt class="py-string">'open_table_data'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L636"></a><tt class="py-lineno">636</tt> <tt class="py-line"> <tt id="link-371" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-371', 'text', 'link-120');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-372" class="py-name"><a title="Bio.EUtils.POM.Comment.get_text
Bio.EUtils.POM.IndentedText.get_text
Bio.LocusLink.web_parse.LocusLinkParser.get_text" class="py-name" href="#" onclick="return doclink('link-372', 'get_text', 'link-208');">get_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L637"></a><tt class="py-lineno">637</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-373" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-373', 'text', 'link-120');">text</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L638"></a><tt class="py-lineno">638</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-374" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-374', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-375" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-375', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L639"></a><tt class="py-lineno">639</tt> <tt class="py-line"> </tt>
<a name="L640"></a><tt class="py-lineno">640</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.add_text_to_object"></a><div id="LocusLinkParser.add_text_to_object-def"><a name="L641"></a><tt class="py-lineno">641</tt> <a class="py-toggle" href="#" id="LocusLinkParser.add_text_to_object-toggle" onclick="return toggle('LocusLinkParser.add_text_to_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#add_text_to_object">add_text_to_object</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">text</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.add_text_to_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.add_text_to_object-expanded"><a name="L642"></a><tt class="py-lineno">642</tt> <tt class="py-line"> <tt class="py-name">stack_item</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-376" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-376', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L643"></a><tt class="py-lineno">643</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt> <tt class="py-name">stack_item</tt><tt class="py-op">,</tt> <tt id="link-377" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.Url
Bio.EUtils.DTDs.eLink_020511.Url
Bio.LocusLink.web_parse.Url
Bio.NetCatch.Url" class="py-name" href="#" onclick="return doclink('link-377', 'Url', 'link-201');">Url</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L644"></a><tt class="py-lineno">644</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">stack_item</tt><tt class="py-op">.</tt><tt id="link-378" class="py-name"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-378', 'description', 'link-78');">description</a></tt> <tt class="py-op">==</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
<a name="L645"></a><tt class="py-lineno">645</tt> <tt class="py-line"> <tt class="py-name">stack_item</tt><tt class="py-op">.</tt><tt id="link-379" class="py-name"><a title="Bio.Blast.NCBIStandalone._DescriptionConsumer.description
Bio.Enzyme._RecordConsumer.description
Bio.Prosite._RecordConsumer.description
Bio.Std.description
Bio.SwissProt.SProt._RecordConsumer.description
Bio.SwissProt.SProt._SequenceConsumer.description
Martel.setup.run_local_tests.description" class="py-name" href="#" onclick="return doclink('link-379', 'description', 'link-78');">description</a></tt> <tt class="py-op">=</tt> <tt id="link-380" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-380', 'text', 'link-120');">text</a></tt> </tt>
<a name="L646"></a><tt class="py-lineno">646</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-381" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-381', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">stack_item</tt> <tt class="py-op">)</tt> </tt>
<a name="L647"></a><tt class="py-lineno">647</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L648"></a><tt class="py-lineno">648</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-382" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-382', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">stack_item</tt> <tt class="py-op">)</tt> </tt>
<a name="L649"></a><tt class="py-lineno">649</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-383" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-383', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-384" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-384', 'text', 'link-120');">text</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L650"></a><tt class="py-lineno">650</tt> <tt class="py-line"> </tt>
<a name="L651"></a><tt class="py-lineno">651</tt> <tt class="py-line"> </tt>
<a name="L652"></a><tt class="py-lineno">652</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.is_contained_by"></a><div id="LocusLinkParser.is_contained_by-def"><a name="L653"></a><tt class="py-lineno">653</tt> <a class="py-toggle" href="#" id="LocusLinkParser.is_contained_by-toggle" onclick="return toggle('LocusLinkParser.is_contained_by');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#is_contained_by">is_contained_by</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">tag</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.is_contained_by-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.is_contained_by-expanded"><a name="L654"></a><tt class="py-lineno">654</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-385" class="py-name" targets="Variable Martel.Time.tag=Martel.Time-module.html#tag"><a title="Martel.Time.tag" class="py-name" href="#" onclick="return doclink('link-385', 'tag', 'link-385');">tag</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">open_tag_stack</tt> </tt>
</div><a name="L655"></a><tt class="py-lineno">655</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.process_structure_stack"></a><div id="LocusLinkParser.process_structure_stack-def"><a name="L656"></a><tt class="py-lineno">656</tt> <a class="py-toggle" href="#" id="LocusLinkParser.process_structure_stack-toggle" onclick="return toggle('LocusLinkParser.process_structure_stack');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#process_structure_stack">process_structure_stack</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.process_structure_stack-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.process_structure_stack-expanded"><a name="L657"></a><tt class="py-lineno">657</tt> <tt class="py-line"> <tt class="py-name">params</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L658"></a><tt class="py-lineno">658</tt> <tt class="py-line"> <tt class="py-name">outer_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt> </tt>
<a name="L659"></a><tt class="py-lineno">659</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">outer_state</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-string">'nomenclature'</tt><tt class="py-op">,</tt> <tt class="py-string">'overview'</tt><tt class="py-op">,</tt> <tt class="py-string">'function'</tt><tt class="py-op">,</tt> <tt class="py-string">'relationships'</tt><tt class="py-op">,</tt> <tt class="py-string">'refseq'</tt><tt class="py-op">,</tt> <tt class="py-string">'locus'</tt><tt class="py-op">,</tt> <tt class="py-string">'map'</tt><tt class="py-op">,</tt> <tt class="py-string">'genbank'</tt><tt class="py-op">,</tt> <tt class="py-string">'additional'</tt><tt class="py-op">,</tt> <tt class="py-string">'external'</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L660"></a><tt class="py-lineno">660</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt> <tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L661"></a><tt class="py-lineno">661</tt> <tt class="py-line"> <tt class="py-name">len_stack</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt> <tt class="py-op">)</tt> </tt>
<a name="L662"></a><tt class="py-lineno">662</tt> <tt class="py-line"><tt class="py-comment"># self.print_stack()</tt> </tt>
<a name="L663"></a><tt class="py-lineno">663</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt id="link-386" class="py-name" targets="Variable Bio.PDB.Polypeptide.i=Bio.PDB.Polypeptide-module.html#i"><a title="Bio.PDB.Polypeptide.i" class="py-name" href="#" onclick="return doclink('link-386', 'i', 'link-386');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt> <tt class="py-op">(</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len_stack</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L664"></a><tt class="py-lineno">664</tt> <tt class="py-line"> <tt id="link-387" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-387', 'item', 'link-3');">item</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-388" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-388', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L665"></a><tt class="py-lineno">665</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-389" class="py-name"><a title="Bio.LocusLink.web_parse.is_open_token" class="py-name" href="#" onclick="return doclink('link-389', 'is_open_token', 'link-16');">is_open_token</a></tt><tt class="py-op">(</tt> <tt id="link-390" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-390', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L666"></a><tt class="py-lineno">666</tt> <tt class="py-line"> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-391" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-391', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-392" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-392', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L667"></a><tt class="py-lineno">667</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-keyword">break</tt> </tt>
<a name="L668"></a><tt class="py-lineno">668</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt id="link-393" class="py-name"><a title="Bio.LocusLink.web_parse.open_list" class="py-name" href="#" onclick="return doclink('link-393', 'open_list', 'link-58');">open_list</a></tt><tt class="py-op">.</tt><tt id="link-394" class="py-name"><a title="Bio.Crystal.Chain.__eq__
Bio.Crystal.Hetero.__eq__
Bio.EUtils.Datatypes.CheckLinkSet.__eq__
Bio.EUtils.Datatypes.DBIds.__eq__
Bio.EUtils.Datatypes.Date.__eq__
Bio.EUtils.Datatypes.IdCheck.__eq__
Bio.EUtils.Datatypes.IdUrlSet.__eq__
Bio.EUtils.Datatypes.Link.__eq__
Bio.EUtils.Datatypes.LinkSetDb.__eq__
Bio.EUtils.Datatypes.LinksLinkSet.__eq__
Bio.EUtils.Datatypes.NeighborLinkSet.__eq__
Bio.EUtils.Datatypes.ObjUrl.__eq__
Bio.EUtils.Datatypes.Problem.__eq__
Bio.EUtils.Datatypes.Provider.__eq__
Bio.EUtils.MultiDict.OrderedMultiDict.__eq__
Bio.EUtils.MultiDict.UnorderedMultiDict.__eq__
Bio.LocusLink.web_parse.Token.__eq__
Bio.Pathway.Reaction.__eq__
Bio.Pathway.Rep.Graph.Graph.__eq__
Bio.Pathway.Rep.HashSet.HashSet.__eq__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__
Bio.Restriction.Restriction.FormattedSeq.__eq__
Bio.Restriction.Restriction.RestrictionType.__eq__" class="py-name" href="#" onclick="return doclink('link-394', '__eq__', 'link-68');">__eq__</a></tt><tt class="py-op">(</tt> <tt id="link-395" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-395', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L669"></a><tt class="py-lineno">669</tt> <tt class="py-line"> <tt class="py-name">container</tt> <tt class="py-op">=</tt> <tt id="link-396" class="py-name" targets="Function Bio.LocusLink.web_parse.process_list()=Bio.LocusLink.web_parse-module.html#process_list"><a title="Bio.LocusLink.web_parse.process_list" class="py-name" href="#" onclick="return doclink('link-396', 'process_list', 'link-396');">process_list</a></tt><tt class="py-op">(</tt> <tt class="py-name">params</tt> <tt class="py-op">)</tt> </tt>
<a name="L670"></a><tt class="py-lineno">670</tt> <tt class="py-line"> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-397" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-397', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">container</tt> <tt class="py-op">)</tt> </tt>
<a name="L671"></a><tt class="py-lineno">671</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L672"></a><tt class="py-lineno">672</tt> <tt class="py-line"> <tt class="py-name">container</tt> <tt class="py-op">=</tt> <tt id="link-398" class="py-name" targets="Function Bio.LocusLink.web_parse.process_dict()=Bio.LocusLink.web_parse-module.html#process_dict"><a title="Bio.LocusLink.web_parse.process_dict" class="py-name" href="#" onclick="return doclink('link-398', 'process_dict', 'link-398');">process_dict</a></tt><tt class="py-op">(</tt> <tt class="py-name">params</tt> <tt class="py-op">)</tt> </tt>
<a name="L673"></a><tt class="py-lineno">673</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">container</tt> <tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L674"></a><tt class="py-lineno">674</tt> <tt class="py-line"> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-399" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-399', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">container</tt> <tt class="py-op">)</tt> </tt>
<a name="L675"></a><tt class="py-lineno">675</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt> <tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt id="link-400" class="py-name"><a title="Bio.LocusLink.web_parse.is_open_token" class="py-name" href="#" onclick="return doclink('link-400', 'is_open_token', 'link-16');">is_open_token</a></tt><tt class="py-op">(</tt> </tt>
<a name="L676"></a><tt class="py-lineno">676</tt> <tt class="py-line"><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">[</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L677"></a><tt class="py-lineno">677</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt> <tt class="py-name">params</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L678"></a><tt class="py-lineno">678</tt> <tt class="py-line"> <tt id="link-401" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-401', 'item', 'link-3');">item</a></tt> <tt class="py-op">=</tt> <tt class="py-name">params</tt><tt class="py-op">.</tt><tt id="link-402" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-402', 'pop', 'link-13');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L679"></a><tt class="py-lineno">679</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">.</tt><tt id="link-403" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-403', 'append', 'link-18');">append</a></tt><tt class="py-op">(</tt> <tt id="link-404" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-404', 'item', 'link-3');">item</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L680"></a><tt class="py-lineno">680</tt> <tt class="py-line"> <tt class="py-name">params</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
</div><a name="L681"></a><tt class="py-lineno">681</tt> <tt class="py-line"> </tt>
<a name="L682"></a><tt class="py-lineno">682</tt> <tt class="py-line"> </tt>
<a name="LocusLinkParser.print_stack"></a><div id="LocusLinkParser.print_stack-def"><a name="L683"></a><tt class="py-lineno">683</tt> <a class="py-toggle" href="#" id="LocusLinkParser.print_stack-toggle" onclick="return toggle('LocusLinkParser.print_stack');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#print_stack">print_stack</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="LocusLinkParser.print_stack-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="LocusLinkParser.print_stack-expanded"><a name="L684"></a><tt class="py-lineno">684</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'%s!!!!!\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">outer_state</tt><tt class="py-op">.</tt><tt class="py-name">upper</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L685"></a><tt class="py-lineno">685</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">stack_item</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">structure_stack</tt><tt class="py-op">:</tt> </tt>
<a name="L686"></a><tt class="py-lineno">686</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'stack has '</tt> <tt class="py-op">+</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt> <tt class="py-name">stack_item</tt> <tt class="py-op">)</tt> </tt>
<a name="L687"></a><tt class="py-lineno">687</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'-----------------'</tt> </tt>
</div></div><a name="L688"></a><tt class="py-lineno">688</tt> <tt class="py-line"> </tt>
<a name="L689"></a><tt class="py-lineno">689</tt> <tt class="py-line"> </tt>
<a name="L690"></a><tt class="py-lineno">690</tt> <tt class="py-line"> </tt>
<a name="L691"></a><tt class="py-lineno">691</tt> <tt class="py-line"> </tt>
<a name="L692"></a><tt class="py-lineno">692</tt> <tt class="py-line"><tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L693"></a><tt class="py-lineno">693</tt> <tt class="py-line"> <tt id="link-405" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-405', 'handle', 'link-126');">handle</a></tt> <tt class="py-op">=</tt> <tt id="link-406" class="py-name" targets="Function Bio.Mindy.FlatDB.open()=Bio.Mindy.FlatDB-module.html#open,Function Bio.Mindy.open()=Bio.Mindy-module.html#open"><a title="Bio.Mindy.FlatDB.open
Bio.Mindy.open" class="py-name" href="#" onclick="return doclink('link-406', 'open', 'link-406');">open</a></tt><tt class="py-op">(</tt> <tt class="py-string">'Hs13225.htm'</tt><tt class="py-op">)</tt> </tt>
<a name="L694"></a><tt class="py-lineno">694</tt> <tt class="py-line"> <tt id="link-407" class="py-name" targets="Variable Bio.LocusLink.web_parse.undo_handle=Bio.LocusLink.web_parse-module.html#undo_handle,Variable Bio.Ndb.undo_handle=Bio.Ndb-module.html#undo_handle"><a title="Bio.LocusLink.web_parse.undo_handle
Bio.Ndb.undo_handle" class="py-name" href="#" onclick="return doclink('link-407', 'undo_handle', 'link-407');">undo_handle</a></tt> <tt class="py-op">=</tt> <tt id="link-408" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-408', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-409" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-409', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-410" class="py-name"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-410', 'UndoHandle', 'link-131');">UndoHandle</a></tt><tt class="py-op">(</tt> <tt id="link-411" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-411', 'handle', 'link-126');">handle</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L695"></a><tt class="py-lineno">695</tt> <tt class="py-line"> <tt id="link-412" class="py-name" targets="Variable Bio.LocusLink.web_parse.locuslink_parser=Bio.LocusLink.web_parse-module.html#locuslink_parser"><a title="Bio.LocusLink.web_parse.locuslink_parser" class="py-name" href="#" onclick="return doclink('link-412', 'locuslink_parser', 'link-412');">locuslink_parser</a></tt> <tt class="py-op">=</tt> <tt id="link-413" class="py-name" targets="Class Bio.LocusLink.web_parse.LocusLinkParser=Bio.LocusLink.web_parse.LocusLinkParser-class.html"><a title="Bio.LocusLink.web_parse.LocusLinkParser" class="py-name" href="#" onclick="return doclink('link-413', 'LocusLinkParser', 'link-413');">LocusLinkParser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L696"></a><tt class="py-lineno">696</tt> <tt class="py-line"> <tt id="link-414" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-414', 'record', 'link-121');">record</a></tt> <tt class="py-op">=</tt> <tt id="link-415" class="py-name"><a title="Bio.LocusLink.web_parse.locuslink_parser" class="py-name" href="#" onclick="return doclink('link-415', 'locuslink_parser', 'link-412');">locuslink_parser</a></tt><tt class="py-op">.</tt><tt id="link-416" class="py-name" targets="Method Bio.Affy.CelFile.CelParser.parse()=Bio.Affy.CelFile.CelParser-class.html#parse,Method Bio.AlignAce.Parser.AlignAceParser.parse()=Bio.AlignAce.Parser.AlignAceParser-class.html#parse,Method Bio.AlignAce.Parser.CompareAceParser.parse()=Bio.AlignAce.Parser.CompareAceParser-class.html#parse,Function Bio.AlignIO.parse()=Bio.AlignIO-module.html#parse,Method Bio.Blast.NCBIStandalone.BlastErrorParser.parse()=Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#parse,Method Bio.Blast.NCBIStandalone.BlastParser.parse()=Bio.Blast.NCBIStandalone.BlastParser-class.html#parse,Method Bio.Blast.NCBIStandalone.PSIBlastParser.parse()=Bio.Blast.NCBIStandalone.PSIBlastParser-class.html#parse,Method Bio.Blast.NCBIWWW.BlastParser.parse()=Bio.Blast.NCBIWWW.BlastParser-class.html#parse,Method Bio.Blast.NCBIXML.BlastParser.parse()=Bio.Blast.NCBIXML.BlastParser-class.html#parse,Function Bio.Blast.NCBIXML.parse()=Bio.Blast.NCBIXML-module.html#parse,Method Bio.CDD.RecordParser.parse()=Bio.CDD.RecordParser-class.html#parse,Method Bio.Compass.RecordParser.parse()=Bio.Compass.RecordParser-class.html#parse,Function Bio.Decode.parse()=Bio.Decode-module.html#parse,Method Bio.ECell.RecordParser.parse()=Bio.ECell.RecordParser-class.html#parse,Method Bio.EUtils.POM.POMDocument.parse()=Bio.EUtils.POM.POMDocument-class.html#parse,Module Bio.EUtils.parse=Bio.EUtils.parse-module.html,Method Bio.Emboss.Primer.Primer3Parser.parse()=Bio.Emboss.Primer.Primer3Parser-class.html#parse,Method Bio.Emboss.Primer.PrimerSearchParser.parse()=Bio.Emboss.Primer.PrimerSearchParser-class.html#parse,Method Bio.Enzyme.RecordParser.parse()=Bio.Enzyme.RecordParser-class.html#parse,Method Bio.Fasta.RecordParser.parse()=Bio.Fasta.RecordParser-class.html#parse,Method Bio.Fasta.SequenceParser.parse()=Bio.Fasta.SequenceParser-class.html#parse,Method Bio.GenBank.FeatureParser.parse()=Bio.GenBank.FeatureParser-class.html#parse,Function Bio.GenBank.LocationParser.parse()=Bio.GenBank.LocationParser-module.html#parse,Method Bio.GenBank.RecordParser.parse()=Bio.GenBank.RecordParser-class.html#parse,Method Bio.GenBank.Scanner.InsdcScanner.parse()=Bio.GenBank.Scanner.InsdcScanner-class.html#parse,Function Bio.Geo.parse()=Bio.Geo-module.html#parse,Method Bio.Gobase.RecordParser.parse()=Bio.Gobase.RecordParser-class.html#parse,Method Bio.IntelliGenetics.RecordParser.parse()=Bio.IntelliGenetics.RecordParser-class.html#parse,Method Bio.InterPro.InterProParser.parse()=Bio.InterPro.InterProParser-class.html#parse,Function Bio.KEGG.Compound.parse()=Bio.KEGG.Compound-module.html#parse,Function Bio.KEGG.Enzyme.parse()=Bio.KEGG.Enzyme-module.html#parse,Function Bio.KEGG.Map.parse()=Bio.KEGG.Map-module.html#parse,Method Bio.LocusLink.RecordParser.parse()=Bio.LocusLink.RecordParser-class.html#parse,Method Bio.LocusLink.web_parse.LocusLinkParser.parse()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#parse,Method Bio.MEME.Parser.MASTParser.parse()=Bio.MEME.Parser.MASTParser-class.html#parse,Method Bio.MEME.Parser.MEMEParser.parse()=Bio.MEME.Parser.MEMEParser-class.html#parse,Method Bio.Medline.RecordParser.parse()=Bio.Medline.RecordParser-class.html#parse,Method Bio.MetaTool.RecordParser.parse()=Bio.MetaTool.RecordParser-class.html#parse,Method Bio.NBRF.RecordParser.parse()=Bio.NBRF.RecordParser-class.html#parse,Method Bio.Ndb.NdbParser.parse()=Bio.Ndb.NdbParser-class.html#parse,Method Bio.ParserSupport.AbstractParser.parse()=Bio.ParserSupport.AbstractParser-class.html#parse,Method Bio.Parsers.spark.GenericParser.parse()=Bio.Parsers.spark.GenericParser-class.html#parse,Method Bio.PopGen.FDist.RecordParser.parse()=Bio.PopGen.FDist.RecordParser-class.html#parse,Method Bio.PopGen.GenePop.RecordParser.parse()=Bio.PopGen.GenePop.RecordParser-class.html#parse,Function Bio.PopGen.GenePop.parse()=Bio.PopGen.GenePop-module.html#parse,Method Bio.Prosite.Prodoc.RecordParser.parse()=Bio.Prosite.Prodoc.RecordParser-class.html#parse,Function Bio.Prosite.Prodoc.parse()=Bio.Prosite.Prodoc-module.html#parse,Method Bio.Prosite.RecordParser.parse()=Bio.Prosite.RecordParser-class.html#parse,Function Bio.Prosite.parse()=Bio.Prosite-module.html#parse,Method Bio.Rebase.RecordParser.parse()=Bio.Rebase.RecordParser-class.html#parse,Method Bio.SCOP.Cla.Parser.parse()=Bio.SCOP.Cla.Parser-class.html#parse,Function Bio.SCOP.Cla.parse()=Bio.SCOP.Cla-module.html#parse,Method Bio.SCOP.Des.Parser.parse()=Bio.SCOP.Des.Parser-class.html#parse,Function Bio.SCOP.Des.parse()=Bio.SCOP.Des-module.html#parse,Method Bio.SCOP.Dom.Parser.parse()=Bio.SCOP.Dom.Parser-class.html#parse,Function Bio.SCOP.Dom.parse()=Bio.SCOP.Dom-module.html#parse,Method Bio.SCOP.Hie.Parser.parse()=Bio.SCOP.Hie.Parser-class.html#parse,Function Bio.SCOP.Hie.parse()=Bio.SCOP.Hie-module.html#parse,Method Bio.SCOP.Raf.Parser.parse()=Bio.SCOP.Raf.Parser-class.html#parse,Function Bio.SCOP.Raf.parse()=Bio.SCOP.Raf-module.html#parse,Method Bio.Saf.RecordParser.parse()=Bio.Saf.RecordParser-class.html#parse,Function Bio.SeqIO.parse()=Bio.SeqIO-module.html#parse,Method Bio.Sequencing.Ace.ACEParser.parse()=Bio.Sequencing.Ace.ACEParser-class.html#parse,Method Bio.Sequencing.Ace.RecordParser.parse()=Bio.Sequencing.Ace.RecordParser-class.html#parse,Method Bio.Sequencing.Phd.RecordParser.parse()=Bio.Sequencing.Phd.RecordParser-class.html#parse,Method Bio.SwissProt.KeyWList.ListParser.parse()=Bio.SwissProt.KeyWList.ListParser-class.html#parse,Function Bio.SwissProt.KeyWList.parse()=Bio.SwissProt.KeyWList-module.html#parse,Method Bio.SwissProt.SProt.RecordParser.parse()=Bio.SwissProt.SProt.RecordParser-class.html#parse,Method Bio.SwissProt.SProt.SequenceParser.parse()=Bio.SwissProt.SProt.SequenceParser-class.html#parse,Function Bio.SwissProt.parse()=Bio.SwissProt-module.html#parse,Method Bio.UniGene.RecordParser.parse()=Bio.UniGene.RecordParser-class.html#parse,Function Bio.Wise.psw.parse()=Bio.Wise.psw-module.html#parse,Method Martel.Parser.HeaderFooterParser.parse()=Martel.Parser.HeaderFooterParser-class.html#parse,Method Martel.Parser.Parser.parse()=Martel.Parser.Parser-class.html#parse,Method Martel.Parser.RecordParser.parse()=Martel.Parser.RecordParser-class.html#parse,Function Martel.msre_parse.parse()=Martel.msre_parse-module.html#parse"><a title="Bio.Affy.CelFile.CelParser.parse
Bio.AlignAce.Parser.AlignAceParser.parse
Bio.AlignAce.Parser.CompareAceParser.parse
Bio.AlignIO.parse
Bio.Blast.NCBIStandalone.BlastErrorParser.parse
Bio.Blast.NCBIStandalone.BlastParser.parse
Bio.Blast.NCBIStandalone.PSIBlastParser.parse
Bio.Blast.NCBIWWW.BlastParser.parse
Bio.Blast.NCBIXML.BlastParser.parse
Bio.Blast.NCBIXML.parse
Bio.CDD.RecordParser.parse
Bio.Compass.RecordParser.parse
Bio.Decode.parse
Bio.ECell.RecordParser.parse
Bio.EUtils.POM.POMDocument.parse
Bio.EUtils.parse
Bio.Emboss.Primer.Primer3Parser.parse
Bio.Emboss.Primer.PrimerSearchParser.parse
Bio.Enzyme.RecordParser.parse
Bio.Fasta.RecordParser.parse
Bio.Fasta.SequenceParser.parse
Bio.GenBank.FeatureParser.parse
Bio.GenBank.LocationParser.parse
Bio.GenBank.RecordParser.parse
Bio.GenBank.Scanner.InsdcScanner.parse
Bio.Geo.parse
Bio.Gobase.RecordParser.parse
Bio.IntelliGenetics.RecordParser.parse
Bio.InterPro.InterProParser.parse
Bio.KEGG.Compound.parse
Bio.KEGG.Enzyme.parse
Bio.KEGG.Map.parse
Bio.LocusLink.RecordParser.parse
Bio.LocusLink.web_parse.LocusLinkParser.parse
Bio.MEME.Parser.MASTParser.parse
Bio.MEME.Parser.MEMEParser.parse
Bio.Medline.RecordParser.parse
Bio.MetaTool.RecordParser.parse
Bio.NBRF.RecordParser.parse
Bio.Ndb.NdbParser.parse
Bio.ParserSupport.AbstractParser.parse
Bio.Parsers.spark.GenericParser.parse
Bio.PopGen.FDist.RecordParser.parse
Bio.PopGen.GenePop.RecordParser.parse
Bio.PopGen.GenePop.parse
Bio.Prosite.Prodoc.RecordParser.parse
Bio.Prosite.Prodoc.parse
Bio.Prosite.RecordParser.parse
Bio.Prosite.parse
Bio.Rebase.RecordParser.parse
Bio.SCOP.Cla.Parser.parse
Bio.SCOP.Cla.parse
Bio.SCOP.Des.Parser.parse
Bio.SCOP.Des.parse
Bio.SCOP.Dom.Parser.parse
Bio.SCOP.Dom.parse
Bio.SCOP.Hie.Parser.parse
Bio.SCOP.Hie.parse
Bio.SCOP.Raf.Parser.parse
Bio.SCOP.Raf.parse
Bio.Saf.RecordParser.parse
Bio.SeqIO.parse
Bio.Sequencing.Ace.ACEParser.parse
Bio.Sequencing.Ace.RecordParser.parse
Bio.Sequencing.Phd.RecordParser.parse
Bio.SwissProt.KeyWList.ListParser.parse
Bio.SwissProt.KeyWList.parse
Bio.SwissProt.SProt.RecordParser.parse
Bio.SwissProt.SProt.SequenceParser.parse
Bio.SwissProt.parse
Bio.UniGene.RecordParser.parse
Bio.Wise.psw.parse
Martel.Parser.HeaderFooterParser.parse
Martel.Parser.Parser.parse
Martel.Parser.RecordParser.parse
Martel.msre_parse.parse" class="py-name" href="#" onclick="return doclink('link-416', 'parse', 'link-416');">parse</a></tt><tt class="py-op">(</tt> <tt id="link-417" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-417', 'handle', 'link-126');">handle</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L697"></a><tt class="py-lineno">697</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-418" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-418', 'record', 'link-121');">record</a></tt> </tt>
<a name="L698"></a><tt class="py-lineno">698</tt> <tt class="py-line"> </tt><script type="text/javascript">
<!--
expandto(location.href);
// -->
</script>
</pre>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:43 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
