<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Bio.LocusLink.locus_format</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<span class="breadcrumbs">
<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.LocusLink-module.html">Package LocusLink</a> ::
Module locus_format
</span>
</td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="Bio.LocusLink.locus_format-pysrc.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<h1 class="epydoc">Source Code for <a href="Bio.LocusLink.locus_format-module.html">Module Bio.LocusLink.locus_format</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">"""Martel based parser to read LocusLink flat files.</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">This is a huge regular expression for LocusLink,</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">built using the 'regular expressions on steroids' capabilities of</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">Martel.</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring">A description of the format can be found in the 'ligand.doc' file</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring">from the Ligand distribution, available from:</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"> http://www.ncbi.nih.gov/LocusLink</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-comment"># Martel</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Class Martel.Expression.Str=Martel.Expression.Str-class.html,Function Martel.Str()=Martel-module.html#Str"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-1', 'Str', 'link-1');">Str</a></tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-2', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-3" class="py-name" targets="Function Martel.Str1()=Martel-module.html#Str1"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-3', 'Str1', 'link-3');">Str1</a></tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-4', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Function Martel.Alt()=Martel-module.html#Alt,Class Martel.Expression.Alt=Martel.Expression.Alt-class.html"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-5', 'Alt', 'link-5');">Alt</a></tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-6" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-6', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-7" class="py-name" targets="Package Bio.Pathway.Rep=Bio.Pathway.Rep-module.html,Function Martel.Rep()=Martel-module.html#Rep"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-7', 'Rep', 'link-7');">Rep</a></tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-8" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-8', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-9" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-9', 'Group', 'link-9');">Group</a></tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-10" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-10', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-11" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-11', 'ToEol', 'link-11');">ToEol</a></tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-12" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-12', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-13" class="py-name" targets="Class Martel.Expression.AnyEol=Martel.Expression.AnyEol-class.html"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-13', 'AnyEol', 'link-13');">AnyEol</a></tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-14" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-14', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-15" class="py-name" targets="Function Martel.Any()=Martel-module.html#Any,Class Martel.Expression.Any=Martel.Expression.Any-class.html"><a title="Martel.Any
Martel.Expression.Any" class="py-name" href="#" onclick="return doclink('link-15', 'Any', 'link-15');">Any</a></tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-16" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-16', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-17" class="py-name" targets="Function Martel.Word()=Martel-module.html#Word"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-17', 'Word', 'link-17');">Word</a></tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-18" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-18', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-19" class="py-name" targets="Function Martel.Opt()=Martel-module.html#Opt"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-19', 'Opt', 'link-19');">Opt</a></tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-20" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-20', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-21" class="py-name" targets="Function Martel.AssertNot()=Martel-module.html#AssertNot"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-21', 'AssertNot', 'link-21');">AssertNot</a></tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-22" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-22', 'Martel', 'link-0');">Martel</a></tt> <tt class="py-keyword">import</tt> <tt id="link-23" class="py-name" targets="Module Martel.RecordReader=Martel.RecordReader-module.html,Class Martel.RecordReader.RecordReader=Martel.RecordReader.RecordReader-class.html"><a title="Martel.RecordReader
Martel.RecordReader.RecordReader" class="py-name" href="#" onclick="return doclink('link-23', 'RecordReader', 'link-23');">RecordReader</a></tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">warnings</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-name">warnings</tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"Bio.LocusLink was deprecated, as NCBI's LocusLink was superceded by Entrez Gene. If you still need this module, please get in touch with the Biopython developers (biopython-dev@biopython.org) to avoid permanent removal of this module"</tt><tt class="py-op">,</tt> <tt class="py-name">DeprecationWarning</tt><tt class="py-op">)</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-comment"># --- First set up some helper constants and functions</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-24" class="py-name" targets="Variable Bio.LocusLink.locus_format.INDENT=Bio.LocusLink.locus_format-module.html#INDENT,Variable Bio.expressions.genbank.INDENT=Bio.expressions.genbank-module.html#INDENT"><a title="Bio.LocusLink.locus_format.INDENT
Bio.expressions.genbank.INDENT" class="py-name" href="#" onclick="return doclink('link-24', 'INDENT', 'link-24');">INDENT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">12</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt id="link-25" class="py-name" targets="Variable Bio.LocusLink.locus_format.blank_spaces=Bio.LocusLink.locus_format-module.html#blank_spaces"><a title="Bio.LocusLink.locus_format.blank_spaces" class="py-name" href="#" onclick="return doclink('link-25', 'blank_spaces', 'link-25');">blank_spaces</a></tt> <tt class="py-op">=</tt> <tt id="link-26" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-26', 'Rep', 'link-7');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-27" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-27', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt id="link-28" class="py-name" targets="Variable Bio.LocusLink.locus_format.point=Bio.LocusLink.locus_format-module.html#point"><a title="Bio.LocusLink.locus_format.point" class="py-name" href="#" onclick="return doclink('link-28', 'point', 'link-28');">point</a></tt> <tt class="py-op">=</tt> <tt id="link-29" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-29', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt><tt class="py-string">"."</tt><tt class="py-op">)</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"><tt id="link-30" class="py-name" targets="Variable Bio.CDD.cdd_format.white_space=Bio.CDD.cdd_format-module.html#white_space,Variable Bio.LocusLink.locus_format.white_space=Bio.LocusLink.locus_format-module.html#white_space,Variable Bio.MetaTool.metatool_format.white_space=Bio.MetaTool.metatool_format-module.html#white_space,Variable Bio.Saf.saf_format.white_space=Bio.Saf.saf_format-module.html#white_space"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-30', 'white_space', 'link-30');">white_space</a></tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-31', 'Rep', 'link-7');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-32" class="py-name"><a title="Martel.Any
Martel.Expression.Any" class="py-name" href="#" onclick="return doclink('link-32', 'Any', 'link-15');">Any</a></tt><tt class="py-op">(</tt> <tt class="py-string">" "</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt id="link-33" class="py-name" targets="Variable Bio.LocusLink.locus_format.locus_keys=Bio.LocusLink.locus_format-module.html#locus_keys"><a title="Bio.LocusLink.locus_format.locus_keys" class="py-name" href="#" onclick="return doclink('link-33', 'locus_keys', 'link-33');">locus_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> \ </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-string">'LOCUSID'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-string">'LOCUS_CONFIRMED'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-string">'LOCUS_TYPE'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-string">'ORGANISM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-string">'STATUS'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-string">'NM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-string">'NP'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-string">'CDD'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-string">'PRODUCT'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-string">'ASSEMBLY'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-string">'CONTIG'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-string">'EVID'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-string">'XM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-string">'XP'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-string">'ACCNUM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-string">'TYPE'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-string">'PROT'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-string">'OFFICIAL_SYMBOL'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-string">'OFFICIAL_GENE_NAME'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-string">'PREFERRED_PRODUCT'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-string">'ALIAS_SYMBOL'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-string">'SUMMARY'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-string">'CHR'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-string">'STS'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-string">'COMP'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-string">'ALIAS_PROT'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-string">'UNIGENE'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-string">'BUTTON'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-string">'LINK'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-string">'OMIM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-string">'MAP'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-string">'MAPLINK'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-string">'ECNUM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-string">'PROTOTYPE'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-string">'DB_DESCR'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-string">'DB_LINK'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-string">'PMID'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-string">'GRIF'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-string">'SUBFUNC'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-string">'GO'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-string">'EXTANNOT'</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt id="link-34" class="py-name" targets="Variable Bio.LocusLink.locus_format.accnum_block_keys=Bio.LocusLink.locus_format-module.html#accnum_block_keys"><a title="Bio.LocusLink.locus_format.accnum_block_keys" class="py-name" href="#" onclick="return doclink('link-34', 'accnum_block_keys', 'link-34');">accnum_block_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> \ </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-string">'ACCNUM'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-string">'TYPE'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-string">'PROT'</tt> \ </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"><tt id="link-35" class="py-name" targets="Variable Bio.LocusLink.locus_format.phenotype=Bio.LocusLink.locus_format-module.html#phenotype"><a title="Bio.LocusLink.locus_format.phenotype" class="py-name" href="#" onclick="return doclink('link-35', 'phenotype', 'link-35');">phenotype</a></tt> <tt class="py-op">=</tt> <tt id="link-36" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-36', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt> <tt class="py-string">'PHENOTYPE'</tt> <tt class="py-op">)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt id="link-37" class="py-name" targets="Variable Bio.LocusLink.locus_format.db=Bio.LocusLink.locus_format-module.html#db,Variable Bio.config.DBRegistry.db=Bio.config.DBRegistry-module.html#db"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-37', 'db', 'link-37');">db</a></tt> <tt class="py-op">=</tt> <tt id="link-38" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-38', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt> <tt class="py-string">'DB'</tt> <tt class="py-op">)</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt id="link-39" class="py-name" targets="Variable Bio.LocusLink.locus_format.accnum_block_key=Bio.LocusLink.locus_format-module.html#accnum_block_key"><a title="Bio.LocusLink.locus_format.accnum_block_key" class="py-name" href="#" onclick="return doclink('link-39', 'accnum_block_key', 'link-39');">accnum_block_key</a></tt> <tt class="py-op">=</tt> <tt id="link-40" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-40', 'Str', 'link-1');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-op">*</tt><tt id="link-41" class="py-name"><a title="Bio.LocusLink.locus_format.accnum_block_keys" class="py-name" href="#" onclick="return doclink('link-41', 'accnum_block_keys', 'link-34');">accnum_block_keys</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt id="link-42" class="py-name" targets="Variable Bio.LocusLink.locus_format.valid_locus_key=Bio.LocusLink.locus_format-module.html#valid_locus_key"><a title="Bio.LocusLink.locus_format.valid_locus_key" class="py-name" href="#" onclick="return doclink('link-42', 'valid_locus_key', 'link-42');">valid_locus_key</a></tt> <tt class="py-op">=</tt> <tt id="link-43" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-43', 'Str', 'link-1');">Str</a></tt><tt class="py-op">(</tt> <tt class="py-op">*</tt><tt id="link-44" class="py-name"><a title="Bio.LocusLink.locus_format.locus_keys" class="py-name" href="#" onclick="return doclink('link-44', 'locus_keys', 'link-33');">locus_keys</a></tt> <tt class="py-op">)</tt> </tt>
<a name="define_locus_line"></a><div id="define_locus_line-def"><a name="L101"></a><tt class="py-lineno">101</tt> <a class="py-toggle" href="#" id="define_locus_line-toggle" onclick="return toggle('define_locus_line');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.locus_format-module.html#define_locus_line">define_locus_line</a><tt class="py-op">(</tt> <tt class="py-param">entry_tag</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="define_locus_line-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="define_locus_line-expanded"><a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">return</tt><tt class="py-op">(</tt> <tt id="link-45" class="py-name"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-45', 'white_space', 'link-30');">white_space</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt id="link-46" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-46', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt><tt class="py-name">entry_tag</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt id="link-47" class="py-name"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-47', 'white_space', 'link-30');">white_space</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt id="link-48" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-48', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt> <tt class="py-string">":"</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-49', 'white_space', 'link-30');">white_space</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt id="link-50" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-50', 'ToEol', 'link-11');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
<a name="define_locus_group"></a><div id="define_locus_group-def"><a name="L110"></a><tt class="py-lineno">110</tt> <a class="py-toggle" href="#" id="define_locus_group-toggle" onclick="return toggle('define_locus_group');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.LocusLink.locus_format-module.html#define_locus_group">define_locus_group</a><tt class="py-op">(</tt> <tt class="py-param">entry_name</tt><tt class="py-op">,</tt> <tt class="py-param">entry_tag</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-51" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-51', 'Group', 'link-9');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-name">entry_name</tt><tt class="py-op">,</tt> \ </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt id="link-52" class="py-name" targets="Function Bio.LocusLink.locus_format.define_locus_line()=Bio.LocusLink.locus_format-module.html#define_locus_line"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-52', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-name">entry_tag</tt> <tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"><tt id="link-53" class="py-name" targets="Variable Bio.LocusLink.locus_format.accnum_block=Bio.LocusLink.locus_format-module.html#accnum_block"><a title="Bio.LocusLink.locus_format.accnum_block" class="py-name" href="#" onclick="return doclink('link-53', 'accnum_block', 'link-53');">accnum_block</a></tt> <tt class="py-op">=</tt> <tt id="link-54" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-54', 'Group', 'link-9');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">'accnum_block'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt id="link-55" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-55', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'ACCNUM'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt id="link-56" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-56', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'TYPE'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt id="link-57" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-57', 'Opt', 'link-19');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-58" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-58', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'PROT'</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt id="link-59" class="py-name" targets="Variable Bio.LocusLink.locus_format.phenotype_block=Bio.LocusLink.locus_format-module.html#phenotype_block"><a title="Bio.LocusLink.locus_format.phenotype_block" class="py-name" href="#" onclick="return doclink('link-59', 'phenotype_block', 'link-59');">phenotype_block</a></tt> <tt class="py-op">=</tt> <tt id="link-60" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-60', 'Group', 'link-9');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">'phenotype_block'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt id="link-61" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-61', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'PHENOTYPE'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-62', 'Opt', 'link-19');">Opt</a></tt><tt class="py-op">(</tt> <tt id="link-63" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-63', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'PHENOTYPE_ID'</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"><tt id="link-64" class="py-name" targets="Variable Bio.LocusLink.locus_format.db_block=Bio.LocusLink.locus_format-module.html#db_block"><a title="Bio.LocusLink.locus_format.db_block" class="py-name" href="#" onclick="return doclink('link-64', 'db_block', 'link-64');">db_block</a></tt> <tt class="py-op">=</tt> <tt id="link-65" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-65', 'Group', 'link-9');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">'db_block'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-66" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-66', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'DB_DESCR'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt id="link-67" class="py-name"><a title="Bio.LocusLink.locus_format.define_locus_line" class="py-name" href="#" onclick="return doclink('link-67', 'define_locus_line', 'link-52');">define_locus_line</a></tt><tt class="py-op">(</tt> <tt class="py-string">'DB_LINK'</tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"><tt id="link-68" class="py-name" targets="Variable Bio.LocusLink.locus_format.begin_record_line=Bio.LocusLink.locus_format-module.html#begin_record_line"><a title="Bio.LocusLink.locus_format.begin_record_line" class="py-name" href="#" onclick="return doclink('link-68', 'begin_record_line', 'link-68');">begin_record_line</a></tt> <tt class="py-op">=</tt> <tt id="link-69" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-69', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt> <tt class="py-string">'>>'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-70" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-70', 'ToEol', 'link-11');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt id="link-71" class="py-name" targets="Variable Bio.LocusLink.locus_format.locus_line=Bio.LocusLink.locus_format-module.html#locus_line,Variable Bio.expressions.genbank.locus_line=Bio.expressions.genbank-module.html#locus_line"><a title="Bio.LocusLink.locus_format.locus_line
Bio.expressions.genbank.locus_line" class="py-name" href="#" onclick="return doclink('link-71', 'locus_line', 'link-71');">locus_line</a></tt> <tt class="py-op">=</tt> <tt id="link-72" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-72', 'Group', 'link-9');">Group</a></tt><tt class="py-op">(</tt> <tt class="py-string">'locus_line'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt id="link-73" class="py-name"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-73', 'white_space', 'link-30');">white_space</a></tt> <tt class="py-op">+</tt> <tt id="link-74" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-74', 'AssertNot', 'link-21');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-75" class="py-name"><a title="Bio.LocusLink.locus_format.accnum_block_key" class="py-name" href="#" onclick="return doclink('link-75', 'accnum_block_key', 'link-39');">accnum_block_key</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-76" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-76', 'AssertNot', 'link-21');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-77" class="py-name"><a title="Bio.LocusLink.locus_format.phenotype" class="py-name" href="#" onclick="return doclink('link-77', 'phenotype', 'link-35');">phenotype</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-78" class="py-name"><a title="Martel.AssertNot" class="py-name" href="#" onclick="return doclink('link-78', 'AssertNot', 'link-21');">AssertNot</a></tt><tt class="py-op">(</tt> <tt id="link-79" class="py-name"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-79', 'db', 'link-37');">db</a></tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-80" class="py-name"><a title="Martel.Word" class="py-name" href="#" onclick="return doclink('link-80', 'Word', 'link-17');">Word</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-81" class="py-name"><a title="Bio.CDD.cdd_format.white_space
Bio.LocusLink.locus_format.white_space
Bio.MetaTool.metatool_format.white_space
Bio.Saf.saf_format.white_space" class="py-name" href="#" onclick="return doclink('link-81', 'white_space', 'link-30');">white_space</a></tt> <tt class="py-op">+</tt> <tt id="link-82" class="py-name"><a title="Martel.Str1" class="py-name" href="#" onclick="return doclink('link-82', 'Str1', 'link-3');">Str1</a></tt><tt class="py-op">(</tt> <tt class="py-string">':'</tt> <tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-83" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-83', 'ToEol', 'link-11');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"><tt id="link-84" class="py-name" targets="Variable Bio.LocusLink.locus_format.locus_record=Bio.LocusLink.locus_format-module.html#locus_record"><a title="Bio.LocusLink.locus_format.locus_record" class="py-name" href="#" onclick="return doclink('link-84', 'locus_record', 'link-84');">locus_record</a></tt> <tt class="py-op">=</tt> <tt id="link-85" class="py-name"><a title="Bio.LocusLink.locus_format.begin_record_line" class="py-name" href="#" onclick="return doclink('link-85', 'begin_record_line', 'link-68');">begin_record_line</a></tt> <tt class="py-op">+</tt> <tt id="link-86" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-86', 'Rep', 'link-7');">Rep</a></tt><tt class="py-op">(</tt> <tt id="link-87" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-87', 'Alt', 'link-5');">Alt</a></tt><tt class="py-op">(</tt> <tt id="link-88" class="py-name"><a title="Bio.LocusLink.locus_format.locus_line
Bio.expressions.genbank.locus_line" class="py-name" href="#" onclick="return doclink('link-88', 'locus_line', 'link-71');">locus_line</a></tt><tt class="py-op">,</tt> <tt id="link-89" class="py-name"><a title="Bio.LocusLink.locus_format.accnum_block" class="py-name" href="#" onclick="return doclink('link-89', 'accnum_block', 'link-53');">accnum_block</a></tt><tt class="py-op">,</tt> <tt id="link-90" class="py-name"><a title="Bio.LocusLink.locus_format.phenotype_block" class="py-name" href="#" onclick="return doclink('link-90', 'phenotype_block', 'link-59');">phenotype_block</a></tt><tt class="py-op">,</tt> <tt id="link-91" class="py-name"><a title="Bio.LocusLink.locus_format.db_block" class="py-name" href="#" onclick="return doclink('link-91', 'db_block', 'link-64');">db_block</a></tt> <tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"><tt class="py-comment">#locus_record = Rep( locus_line )</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt><script type="text/javascript">
<!--
expandto(location.href);
// -->
</script>
</pre>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:49 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
