<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Bio.KEGG</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<span class="breadcrumbs">
<a href="Bio-module.html">Package Bio</a> ::
Package KEGG
</span>
</td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="Bio.KEGG-pysrc.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<h1 class="epydoc">Source Code for <a href="Bio.KEGG-module.html">Package Bio.KEGG</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Copyright 2001 by Tarjei Mikkelsen. All rights reserved.</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># license. Please see the LICENSE file that should have been included</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">This module provides code to work with data from the KEGG database.</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring">References:</tt> </tt>
<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-docstring">Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes.</tt> </tt>
<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-docstring">Nucleic Acids Res. 28, 29-34 (2000). </tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"><tt class="py-docstring">URL: http://www.genome.ad.jp/kegg/</tt> </tt>
<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable Bio.KEGG.KEGG_ITEM_LENGTH=Bio.KEGG-module.html#KEGG_ITEM_LENGTH"><a title="Bio.KEGG.KEGG_ITEM_LENGTH" class="py-name" href="#" onclick="return doclink('link-0', 'KEGG_ITEM_LENGTH', 'link-0');">KEGG_ITEM_LENGTH</a></tt> <tt class="py-op">=</tt> <tt class="py-number">12</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable Bio.KEGG.KEGG_LINE_LENGTH=Bio.KEGG-module.html#KEGG_LINE_LENGTH"><a title="Bio.KEGG.KEGG_LINE_LENGTH" class="py-name" href="#" onclick="return doclink('link-1', 'KEGG_LINE_LENGTH', 'link-1');">KEGG_LINE_LENGTH</a></tt> <tt class="py-op">=</tt> <tt class="py-number">80</tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable Bio.KEGG.KEGG_DATA_LENGTH=Bio.KEGG-module.html#KEGG_DATA_LENGTH"><a title="Bio.KEGG.KEGG_DATA_LENGTH" class="py-name" href="#" onclick="return doclink('link-2', 'KEGG_DATA_LENGTH', 'link-2');">KEGG_DATA_LENGTH</a></tt> <tt class="py-op">=</tt> <tt id="link-3" class="py-name"><a title="Bio.KEGG.KEGG_LINE_LENGTH" class="py-name" href="#" onclick="return doclink('link-3', 'KEGG_LINE_LENGTH', 'link-1');">KEGG_LINE_LENGTH</a></tt> <tt class="py-op">-</tt> <tt id="link-4" class="py-name"><a title="Bio.KEGG.KEGG_ITEM_LENGTH" class="py-name" href="#" onclick="return doclink('link-4', 'KEGG_ITEM_LENGTH', 'link-0');">KEGG_ITEM_LENGTH</a></tt> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-comment"># wrap rule = [indent, connect, (splitstr, connect, splitafter, keep), ...]</tt> </tt>
<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-5" class="py-name" targets="Function Bio.KEGG._default_wrap()=Bio.KEGG-module.html#_default_wrap"><a title="Bio.KEGG._default_wrap" class="py-name" href="#" onclick="return doclink('link-5', '_default_wrap', 'link-5');">_default_wrap</a></tt> <tt class="py-op">=</tt> <tt class="py-keyword">lambda</tt> <tt class="py-name">indent</tt><tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-name">indent</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> </tt>
<a name="_wrap_kegg"></a><div id="_wrap_kegg-def"><a name="L23"></a><tt class="py-lineno">23</tt> <a class="py-toggle" href="#" id="_wrap_kegg-toggle" onclick="return toggle('_wrap_kegg');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.KEGG-module.html#_wrap_kegg">_wrap_kegg</a><tt class="py-op">(</tt><tt class="py-param">line</tt><tt class="py-op">,</tt> <tt class="py-param">max_width</tt> <tt class="py-op">=</tt> <tt id="link-6" class="py-name"><a title="Bio.KEGG.KEGG_DATA_LENGTH" class="py-name" href="#" onclick="return doclink('link-6', 'KEGG_DATA_LENGTH', 'link-2');">KEGG_DATA_LENGTH</a></tt><tt class="py-op">,</tt> <tt class="py-param">wrap_rule</tt> <tt class="py-op">=</tt> <tt id="link-7" class="py-name"><a title="Bio.KEGG._default_wrap" class="py-name" href="#" onclick="return doclink('link-7', '_default_wrap', 'link-5');">_default_wrap</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_wrap_kegg-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="_wrap_kegg-expanded"><a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt class="py-docstring">"""Wraps the input line for KEGG output.</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"><tt class="py-docstring"> Arguments:</tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"><tt class="py-docstring"> o info - String holding the information we want wrapped</tt> </tt>
<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"><tt class="py-docstring"> for KEGG output.</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"><tt class="py-docstring"> o max_width - Maximum width of a line.</tt> </tt>
<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"><tt class="py-docstring"> o wrap_rule - A wrap rule (see above) for deciding how to split</tt> </tt>
<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"><tt class="py-docstring"> strings that must be wrapped.</tt> </tt>
<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt id="link-8" class="py-name" targets="Variable Martel.test.test_swissprot38.s=Martel.test.test_swissprot38-module.html#s"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-8', 's', 'link-8');">s</a></tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-name">wrapped_line</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"> <tt class="py-name">indent</tt> <tt class="py-op">=</tt> <tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt class="py-name">wrap_rule</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-name">connect</tt> <tt class="py-op">=</tt> <tt class="py-name">wrap_rule</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"> <tt class="py-name">rules</tt> <tt class="py-op">=</tt> <tt class="py-name">wrap_rule</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> <tt class="py-op"><=</tt> <tt class="py-name">max_width</tt><tt class="py-op">:</tt> </tt>
<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-name">wrapped_line</tt> <tt class="py-op">=</tt> <tt class="py-name">wrapped_line</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt> </tt>
<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-9', 's', 'link-8');">s</a></tt> <tt class="py-op">=</tt> <tt id="link-10" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-10', 's', 'link-8');">s</a></tt> <tt class="py-op">+</tt> <tt class="py-name">wrapped_line</tt> </tt>
<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"> <tt class="py-name">did_split</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-11" class="py-name" targets="Method Bio.Prosite._RecordConsumer.rule()=Bio.Prosite._RecordConsumer-class.html#rule"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-11', 'rule', 'link-11');">rule</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">rules</tt><tt class="py-op">:</tt> </tt>
<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> <tt class="py-name">to</tt> <tt class="py-op">=</tt> <tt class="py-name">max_width</tt> </tt>
<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-12" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-12', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-name">to</tt> <tt class="py-op">=</tt> <tt class="py-name">to</tt> <tt class="py-op">+</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-13" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-13', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt class="py-name">split_idx</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">rfind</tt><tt class="py-op">(</tt><tt id="link-14" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-14', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">to</tt><tt class="py-op">)</tt> </tt>
<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">split_idx</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-15" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-15', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-keyword">and</tt> <tt id="link-16" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-16', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> <tt class="py-name">split_idx</tt> <tt class="py-op">=</tt> <tt class="py-name">split_idx</tt> <tt class="py-op">+</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-17" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-17', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-name">wrapped_line</tt> <tt class="py-op">=</tt> <tt class="py-name">wrapped_line</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-name">split_idx</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-18" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-18', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-name">split_idx</tt> <tt class="py-op">=</tt> <tt class="py-name">split_idx</tt> <tt class="py-op">+</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-19" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-19', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">indent</tt> <tt class="py-op">+</tt> <tt id="link-20" class="py-name"><a title="Bio.Prosite._RecordConsumer.rule" class="py-name" href="#" onclick="return doclink('link-20', 'rule', 'link-11');">rule</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-name">split_idx</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-name">did_split</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">did_split</tt><tt class="py-op">:</tt> </tt>
<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-name">wrapped_line</tt> <tt class="py-op">=</tt> <tt class="py-name">wrapped_line</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-name">max_width</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">indent</tt> <tt class="py-op">+</tt> <tt class="py-name">connect</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-name">max_width</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-21" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-21', 's', 'link-8');">s</a></tt> </tt>
</div><a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> </tt>
<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> </tt>
<a name="_write_kegg"></a><div id="_write_kegg-def"><a name="L66"></a><tt class="py-lineno">66</tt> <a class="py-toggle" href="#" id="_write_kegg-toggle" onclick="return toggle('_write_kegg');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.KEGG-module.html#_write_kegg">_write_kegg</a><tt class="py-op">(</tt><tt class="py-param">item</tt><tt class="py-op">,</tt> <tt class="py-param">info</tt><tt class="py-op">,</tt> <tt class="py-param">indent</tt> <tt class="py-op">=</tt> <tt id="link-22" class="py-name"><a title="Bio.KEGG.KEGG_ITEM_LENGTH" class="py-name" href="#" onclick="return doclink('link-22', 'KEGG_ITEM_LENGTH', 'link-0');">KEGG_ITEM_LENGTH</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_write_kegg-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="_write_kegg-expanded"><a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-docstring">"""Write a indented KEGG record item.</tt> </tt>
<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"><tt class="py-docstring"> Arguments:</tt> </tt>
<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"><tt class="py-docstring"> o item - The name of the item to be written.</tt> </tt>
<a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"><tt class="py-docstring"> o info - The (wrapped) information to write.</tt> </tt>
<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"><tt class="py-docstring"> o indent - Width of item field.</tt> </tt>
<a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> <tt id="link-23" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-23', 's', 'link-8');">s</a></tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">info</tt><tt class="py-op">:</tt> </tt>
<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"> <tt class="py-name">partial_lines</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">splitlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">l</tt> <tt class="py-keyword">in</tt> <tt class="py-name">partial_lines</tt><tt class="py-op">:</tt> </tt>
<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"> <tt id="link-24" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-24', 's', 'link-8');">s</a></tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-25', 's', 'link-8');">s</a></tt> <tt class="py-op">+</tt> <tt id="link-26" class="py-name" targets="Method Bio.EUtils.Datatypes.DBIds.item()=Bio.EUtils.Datatypes.DBIds-class.html#item"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-26', 'item', 'link-26');">item</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-name">indent</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-name">l</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-27" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-27', 'item', 'link-26');">item</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-string">""</tt><tt class="py-op">:</tt> <tt class="py-comment"># ensure item is only written on first line</tt> </tt>
<a name="L81"></a><tt class="py-lineno">81</tt> <tt class="py-line"> <tt id="link-28" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-28', 'item', 'link-26');">item</a></tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
<a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-29" class="py-name"><a title="Martel.test.test_swissprot38.s" class="py-name" href="#" onclick="return doclink('link-29', 's', 'link-8');">s</a></tt> </tt>
</div><a name="L83"></a><tt class="py-lineno">83</tt> <tt class="py-line"> </tt><script type="text/javascript">
<!--
expandto(location.href);
// -->
</script>
</pre>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:46 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
