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<a href="Bio-module.html">Package Bio</a> ::
Package KEGG
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<!-- ==================== PACKAGE DESCRIPTION ==================== -->
<h1 class="epydoc">Package KEGG</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.KEGG-pysrc.html">source code</a></span></p>
<p>This module provides code to work with data from the KEGG
database.</p>
<p>References:</p>
<p>Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and
Genomes. Nucleic Acids Res. 28, 29-34 (2000).</p>
<p>URL: http://www.genome.ad.jp/kegg/</p>
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<li> <strong class="uidlink"><a href="Bio.KEGG.Compound-module.html">Bio.KEGG.Compound</a></strong>: <em class="summary">This module provides code to work with the KEGG Ligand/Compound
database.</em> </li>
<li> <strong class="uidlink"><a href="Bio.KEGG.Enzyme-module.html">Bio.KEGG.Enzyme</a></strong>: <em class="summary">This module provides code to work with the KEGG Enzyme database.</em> </li>
<li> <strong class="uidlink"><a href="Bio.KEGG.Map-module.html">Bio.KEGG.Map</a></strong>: <em class="summary">This module provides code to import KEGG Pathway maps for use with
the Biopython Pathway module.</em> </li>
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<td><span class="summary-sig"><a name="_default_wrap"></a><span class="summary-sig-name">_default_wrap</span>(<span class="summary-sig-arg">indent</span>)</span></td>
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<span class="codelink"><a href="Bio.KEGG-pysrc.html#_default_wrap">source code</a></span>
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<td><span class="summary-sig"><a href="Bio.KEGG-module.html#_wrap_kegg" class="summary-sig-name" onclick="show_private();">_wrap_kegg</a>(<span class="summary-sig-arg">line</span>,
<span class="summary-sig-arg">max_width</span>=<span class="summary-sig-default">68</span>,
<span class="summary-sig-arg">wrap_rule</span>=<span class="summary-sig-default"><function <lambda> at 0x3fe2758></span>)</span><br />
Wraps the input line for KEGG output.</td>
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<span class="summary-type"> </span>
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<td><span class="summary-sig"><a href="Bio.KEGG-module.html#_write_kegg" class="summary-sig-name" onclick="show_private();">_write_kegg</a>(<span class="summary-sig-arg">item</span>,
<span class="summary-sig-arg">info</span>,
<span class="summary-sig-arg">indent</span>=<span class="summary-sig-default">12</span>)</span><br />
Write a indented KEGG record item.</td>
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<span class="codelink"><a href="Bio.KEGG-pysrc.html#_write_kegg">source code</a></span>
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<span class="summary-type"> </span>
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<a name="KEGG_ITEM_LENGTH"></a><span class="summary-name">KEGG_ITEM_LENGTH</span> = <code title="12">12</code>
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<span class="summary-type"> </span>
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<a name="KEGG_LINE_LENGTH"></a><span class="summary-name">KEGG_LINE_LENGTH</span> = <code title="80">80</code>
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<a name="KEGG_DATA_LENGTH"></a><span class="summary-name">KEGG_DATA_LENGTH</span> = <code title="68">68</code>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">_wrap_kegg</span>(<span class="sig-arg">line</span>,
<span class="sig-arg">max_width</span>=<span class="sig-default">68</span>,
<span class="sig-arg">wrap_rule</span>=<span class="sig-default"><function <lambda> at 0x3fe2758></span>)</span>
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<p>Wraps the input line for KEGG output.</p>
<p>Arguments:</p>
<p>o info - String holding the information we want wrapped for KEGG
output. o max_width - Maximum width of a line. o wrap_rule - A wrap rule
(see above) for deciding how to split strings that must be wrapped.</p>
<dl class="fields">
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<h3 class="epydoc"><span class="sig"><span class="sig-name">_write_kegg</span>(<span class="sig-arg">item</span>,
<span class="sig-arg">info</span>,
<span class="sig-arg">indent</span>=<span class="sig-default">12</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.KEGG-pysrc.html#_write_kegg">source code</a></span>
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<p>Write a indented KEGG record item.</p>
<p>Arguments:</p>
<p>o item - The name of the item to be written. o info - The (wrapped)
information to write. o indent - Width of item field.</p>
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