<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.KDTree.CKDTree.KDTree</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.KDTree-module.html">Package KDTree</a> :: <a href="Bio.KDTree.CKDTree-module.html">Module CKDTree</a> :: Class KDTree </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.KDTree.CKDTree.KDTree-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class KDTree</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree">source code</a></span></p> <pre class="base-tree"> <a href="Bio.KDTree.CKDTree._object-class.html" onclick="show_private();">_object</a> --+ | <strong class="uidshort">KDTree</strong> </pre> <hr /> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__del__"></a><span class="summary-sig-name">__del__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">destroy</span>=<span class="summary-sig-default">_CKDTree.delete_KDTree</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.__del__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="set_data"></a><span class="summary-sig-name">set_data</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.set_data">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="search_center_radius"></a><span class="summary-sig-name">search_center_radius</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.search_center_radius">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="get_count"></a><span class="summary-sig-name">get_count</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.get_count">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="neighbor_search"></a><span class="summary-sig-name">neighbor_search</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.neighbor_search">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="neighbor_simple_search"></a><span class="summary-sig-name">neighbor_simple_search</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.neighbor_simple_search">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="neighbor_get_count"></a><span class="summary-sig-name">neighbor_get_count</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.neighbor_get_count">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="get_indices"></a><span class="summary-sig-name">get_indices</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.get_indices">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="get_radii"></a><span class="summary-sig-name">get_radii</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.get_radii">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="neighbor_get_indices"></a><span class="summary-sig-name">neighbor_get_indices</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.neighbor_get_indices">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="neighbor_get_radii"></a><span class="summary-sig-name">neighbor_get_radii</span>(<span class="summary-sig-arg">*args</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.neighbor_get_radii">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__repr__"></a><span class="summary-sig-name">__repr__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.KDTree.CKDTree-pysrc.html#KDTree.__repr__">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== CLASS VARIABLES ==================== --> <a name="section-ClassVariables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassVariables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="__swig_setmethods__"></a><span class="summary-name">__swig_setmethods__</span> = <code title="{}">{}</code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="__setattr__"></a><span class="summary-name">__setattr__</span> = <code title="lambda self, name, value:">lambda self, name, value:</code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="__swig_getmethods__"></a><span class="summary-name">__swig_getmethods__</span> = <code title="{}">{}</code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="__getattr__"></a><span class="summary-name">__getattr__</span> = <code title="lambda self, name:">lambda self, name:</code> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" 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