Sophie: biopython-doc-1.47-2mdv2008.1 x86

biopython-doc-1.47-2mdv2008.1.x86_64.rpm

<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>Bio.InterPro</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

      <th class="navbar" width="100%"></th>
  </tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
  <tr valign="top">
    <td width="100%">
      <span class="breadcrumbs">
        <a href="Bio-module.html">Package&nbsp;Bio</a> ::
        Package&nbsp;InterPro
      </span>
    </td>
    <td>
      <table cellpadding="0" cellspacing="0">
        <!-- hide/show private -->
        <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
    onclick="toggle_private();">hide&nbsp;private</a>]</span></td></tr>
        <tr><td align="right"><span class="options"
            >[<a href="frames.html" target="_top">frames</a
            >]&nbsp;|&nbsp;<a href="Bio.InterPro-pysrc.html"
            target="_top">no&nbsp;frames</a>]</span></td></tr>
      </table>
    </td>
  </tr>
</table>
<h1 class="epydoc">Source Code for <a href="Bio.InterPro-module.html">Package Bio.InterPro</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">  1</tt>  <tt class="py-line"><tt class="py-comment"># Copyright 2001 by Katharine Lindner.  All rights reserved.</tt> </tt>
<a name="L2"></a><tt class="py-lineno">  2</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This code is part of the Biopython distribution and governed by its</tt> </tt>
<a name="L3"></a><tt class="py-lineno">  3</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># license.  Please see the LICENSE file that should have been included</tt> </tt>
<a name="L4"></a><tt class="py-lineno">  4</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as part of this package.</tt> </tt>
<a name="L5"></a><tt class="py-lineno">  5</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L6"></a><tt class="py-lineno">  6</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L7"></a><tt class="py-lineno">  7</tt>  <tt class="py-line"><tt class="py-docstring">This module provides code to work with html files from InterPro,</tt> </tt>
<a name="L8"></a><tt class="py-lineno">  8</tt>  <tt class="py-line"><tt class="py-docstring">and code to access resources at InterPro over the WWW.</tt> </tt>
<a name="L9"></a><tt class="py-lineno">  9</tt>  <tt class="py-line"><tt class="py-docstring">http://www.ebi.ac.uk/interpro/</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt>  <tt class="py-line"><tt class="py-docstring">Classes:</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt>  <tt class="py-line"><tt class="py-docstring">Record             Holds interpro sequence data.</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt>  <tt class="py-line"><tt class="py-docstring">InterProParser     Parses interpro sequence data into a Record object.</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt>  <tt class="py-line"><tt class="py-docstring">Functions:</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt>  <tt class="py-line"><tt class="py-docstring">get_interpro_entry</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt>  <tt class="py-line"> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Module Bio.File=Bio.File-module.html"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-1', 'File', 'link-1');">File</a></tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">sgmllib</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-2', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Module Bio.SeqFeature=Bio.SeqFeature-module.html,Class Bio.SeqFeature.SeqFeature=Bio.SeqFeature.SeqFeature-class.html"><a title="Bio.SeqFeature
Bio.SeqFeature.SeqFeature" class="py-name" href="#" onclick="return doclink('link-3', 'SeqFeature', 'link-3');">SeqFeature</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Class Bio.GenBank.Record.Reference=Bio.GenBank.Record.Reference-class.html,Class Bio.Prosite.Prodoc.Reference=Bio.Prosite.Prodoc.Reference-class.html,Class Bio.SeqFeature.Reference=Bio.SeqFeature.Reference-class.html,Class Bio.SwissProt.SProt.Reference=Bio.SwissProt.SProt.Reference-class.html"><a title="Bio.GenBank.Record.Reference
Bio.Prosite.Prodoc.Reference
Bio.SeqFeature.Reference
Bio.SwissProt.SProt.Reference" class="py-name" href="#" onclick="return doclink('link-4', 'Reference', 'link-4');">Reference</a></tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt>  <tt class="py-line"> </tt>
<a name="Record"></a><div id="Record-def"><a name="L25"></a><tt class="py-lineno"> 25</tt> <a class="py-toggle" href="#" id="Record-toggle" onclick="return toggle('Record');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.InterPro.Record-class.html">Record</a><tt class="py-op">(</tt> <tt class="py-base-class">dict</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Record-expanded"><a name="L26"></a><tt class="py-lineno"> 26</tt>  <tt class="py-line"> </tt>
<a name="Record.__str__"></a><div id="Record.__str__-def"><a name="L27"></a><tt class="py-lineno"> 27</tt> <a class="py-toggle" href="#" id="Record.__str__-toggle" onclick="return toggle('Record.__str__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.Record-class.html#__str__">__str__</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Record.__str__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Record.__str__-expanded"><a name="L28"></a><tt class="py-lineno"> 28</tt>  <tt class="py-line">        <tt id="link-5" class="py-name" targets="Method Bio.Crystal.Crystal.keys()=Bio.Crystal.Crystal-class.html#keys,Method Bio.EUtils.MultiDict._BaseMultiDict.keys()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#keys,Method Bio.GenBank.NCBIDictionary.keys()=Bio.GenBank.NCBIDictionary-class.html#keys,Method Bio.Mindy.BaseDB.DictLookup.keys()=Bio.Mindy.BaseDB.DictLookup-class.html#keys,Method Bio.Mindy.BaseDB.OpenDB.keys()=Bio.Mindy.BaseDB.OpenDB-class.html#keys,Method Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys()=Bio.Mindy.BerkeleyDB.PrimaryNamespace-class.html#keys,Method Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys()=Bio.Mindy.BerkeleyDB.SecondaryNamespace-class.html#keys,Method Bio.Mindy.FlatDB.PrimaryNamespace.keys()=Bio.Mindy.FlatDB.PrimaryNamespace-class.html#keys,Method Bio.Mindy.FlatDB.PrimaryTable.keys()=Bio.Mindy.FlatDB.PrimaryTable-class.html#keys,Method Bio.Mindy.FlatDB.SecondaryNamespace.keys()=Bio.Mindy.FlatDB.SecondaryNamespace-class.html#keys,Method Bio.Mindy.FlatDB.SecondaryTable.keys()=Bio.Mindy.FlatDB.SecondaryTable-class.html#keys,Method Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys()=Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys,Method Bio.Prosite.ExPASyDictionary.keys()=Bio.Prosite.ExPASyDictionary-class.html#keys,Method Bio.Prosite.Prodoc.ExPASyDictionary.keys()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#keys,Method Bio.PubMed.Dictionary.keys()=Bio.PubMed.Dictionary-class.html#keys,Method Bio.SwissProt.SProt.Dictionary.keys()=Bio.SwissProt.SProt.Dictionary-class.html#keys,Method Bio.SwissProt.SProt.ExPASyDictionary.keys()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#keys,Method Bio.config.Registry.Registry.keys()=Bio.config.Registry.Registry-class.html#keys,Method BioSQL.BioSeqDatabase.BioSeqDatabase.keys()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#keys,Method BioSQL.BioSeqDatabase.DBServer.keys()=BioSQL.BioSeqDatabase.DBServer-class.html#keys,Method Martel.Parser.MartelAttributeList.keys()=Martel.Parser.MartelAttributeList-class.html#keys"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-5', 'keys', 'link-5');">keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-6', 'keys', 'link-5');">keys</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt>  <tt class="py-line">        <tt id="link-7" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-7', 'keys', 'link-5');">keys</a></tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Method Bio.PDB.Residue.DisorderedResidue.sort()=Bio.PDB.Residue.DisorderedResidue-class.html#sort,Method Bio.PDB.Residue.Residue.sort()=Bio.PDB.Residue.Residue-class.html#sort,Method Bio.Sequencing.Ace.ACEFileRecord.sort()=Bio.Sequencing.Ace.ACEFileRecord-class.html#sort"><a title="Bio.PDB.Residue.DisorderedResidue.sort
Bio.PDB.Residue.Residue.sort
Bio.Sequencing.Ace.ACEFileRecord.sort" class="py-name" href="#" onclick="return doclink('link-8', 'sort', 'link-8');">sort</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt>  <tt class="py-line">        <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt id="link-9" class="py-name" targets="Variable Bio.Translate.key=Bio.Translate-module.html#key"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-9', 'key', 'link-9');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-10" class="py-name"><a title="Bio.Crystal.Crystal.keys
Bio.EUtils.MultiDict._BaseMultiDict.keys
Bio.GenBank.NCBIDictionary.keys
Bio.Mindy.BaseDB.DictLookup.keys
Bio.Mindy.BaseDB.OpenDB.keys
Bio.Mindy.BerkeleyDB.PrimaryNamespace.keys
Bio.Mindy.BerkeleyDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryNamespace.keys
Bio.Mindy.FlatDB.PrimaryTable.keys
Bio.Mindy.FlatDB.SecondaryNamespace.keys
Bio.Mindy.FlatDB.SecondaryTable.keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys
Bio.Prosite.ExPASyDictionary.keys
Bio.Prosite.Prodoc.ExPASyDictionary.keys
Bio.PubMed.Dictionary.keys
Bio.SwissProt.SProt.Dictionary.keys
Bio.SwissProt.SProt.ExPASyDictionary.keys
Bio.config.Registry.Registry.keys
BioSQL.BioSeqDatabase.BioSeqDatabase.keys
BioSQL.BioSeqDatabase.DBServer.keys
Martel.Parser.MartelAttributeList.keys" class="py-name" href="#" onclick="return doclink('link-10', 'keys', 'link-5');">keys</a></tt><tt class="py-op">:</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt>  <tt class="py-line">            <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt id="link-11" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-11', 'key', 'link-9');">key</a></tt> <tt class="py-op">]</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt id="link-12" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-12', 'key', 'link-9');">key</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'References'</tt><tt class="py-op">:</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'\n%s\n'</tt> <tt class="py-op">%</tt> <tt id="link-13" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-13', 'key', 'link-9');">key</a></tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt id="link-14" class="py-name" targets="Method Bio.Blast.NCBIStandalone._HeaderConsumer.reference()=Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference,Method Bio.Prosite.Prodoc._RecordConsumer.reference()=Bio.Prosite.Prodoc._RecordConsumer-class.html#reference,Variable Bio.expressions.embl.embl65.reference=Bio.expressions.embl.embl65-module.html#reference,Variable Bio.expressions.genbank.reference=Bio.expressions.genbank-module.html#reference,Variable Bio.expressions.swissprot.sprot38.reference=Bio.expressions.swissprot.sprot38-module.html#reference,Variable Martel.test.test_swissprot38.reference=Martel.test.test_swissprot38-module.html#reference,Variable Martel.test.testformats.swissprot38.reference=Martel.test.testformats.swissprot38-module.html#reference"><a title="Bio.Blast.NCBIStandalone._HeaderConsumer.reference
Bio.Prosite.Prodoc._RecordConsumer.reference
Bio.expressions.embl.embl65.reference
Bio.expressions.genbank.reference
Bio.expressions.swissprot.sprot38.reference
Martel.test.test_swissprot38.reference
Martel.test.testformats.swissprot38.reference" class="py-name" href="#" onclick="return doclink('link-14', 'reference', 'link-14');">reference</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">val</tt><tt class="py-op">:</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt>  <tt class="py-line">                    <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt> <tt id="link-15" class="py-name"><a title="Bio.Blast.NCBIStandalone._HeaderConsumer.reference
Bio.Prosite.Prodoc._RecordConsumer.reference
Bio.expressions.embl.embl65.reference
Bio.expressions.genbank.reference
Bio.expressions.swissprot.sprot38.reference
Martel.test.test_swissprot38.reference
Martel.test.testformats.swissprot38.reference" class="py-name" href="#" onclick="return doclink('link-15', 'reference', 'link-14');">reference</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'\n'</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt id="link-16" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-16', 'key', 'link-9');">key</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'Examples'</tt><tt class="py-op">:</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'\n%s\n'</tt> <tt class="py-op">%</tt> <tt id="link-17" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-17', 'key', 'link-9');">key</a></tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt class="py-name">example</tt> <tt class="py-keyword">in</tt> <tt class="py-name">val</tt><tt class="py-op">:</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt>  <tt class="py-line">                    <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">example</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt id="link-18" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-18', 'key', 'link-9');">key</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'Abstract'</tt><tt class="py-op">:</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'\n%s\n'</tt> <tt class="py-op">%</tt> <tt id="link-19" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-19', 'key', 'link-9');">key</a></tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s...\n'</tt> <tt class="py-op">%</tt> <tt class="py-name">val</tt><tt class="py-op">[</tt> <tt class="py-op">:</tt> <tt class="py-number">80</tt> <tt class="py-op">]</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt id="link-20" class="py-name" targets="Variable Bio.GenBank.LocationParser.Integer.type=Bio.GenBank.LocationParser.Integer-class.html#type,Variable Bio.GenBank.LocationParser.Symbol.type=Bio.GenBank.LocationParser.Symbol-class.html#type,Variable Bio.GenBank.LocationParser.UnsignedInteger.type=Bio.GenBank.LocationParser.UnsignedInteger-class.html#type"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-20', 'type', 'link-20');">type</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt id="link-21" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-21', 'key', 'link-9');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt id="link-22" class="py-name" targets="Method Bio.Pathway.Rep.HashSet.HashSet.list()=Bio.Pathway.Rep.HashSet.HashSet-class.html#list"><a title="Bio.Pathway.Rep.HashSet.HashSet.list" class="py-name" href="#" onclick="return doclink('link-22', 'list', 'link-22');">list</a></tt><tt class="py-op">:</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'\n%s\n'</tt> <tt class="py-op">%</tt> <tt id="link-23" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-23', 'key', 'link-9');">key</a></tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt id="link-24" class="py-name" targets="Method Bio.EUtils.Datatypes.DBIds.item()=Bio.EUtils.Datatypes.DBIds-class.html#item"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-24', 'item', 'link-24');">item</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">val</tt><tt class="py-op">:</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt>  <tt class="py-line">                    <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s\n'</tt> <tt class="py-op">%</tt> <tt id="link-25" class="py-name"><a title="Bio.EUtils.Datatypes.DBIds.item" class="py-name" href="#" onclick="return doclink('link-25', 'item', 'link-24');">item</a></tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt>  <tt class="py-line"> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt>  <tt class="py-line">                <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt> <tt class="py-op">+</tt> <tt class="py-string">'%s: %s\n'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> <tt id="link-26" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-26', 'key', 'link-9');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt id="link-27" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-27', 'key', 'link-9');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">out</tt> </tt>
</div></div><a name="L53"></a><tt class="py-lineno"> 53</tt>  <tt class="py-line"> </tt>
<a name="InterProParser"></a><div id="InterProParser-def"><a name="L54"></a><tt class="py-lineno"> 54</tt> <a class="py-toggle" href="#" id="InterProParser-toggle" onclick="return toggle('InterProParser');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html">InterProParser</a><tt class="py-op">(</tt>  <tt class="py-base-class">sgmllib</tt><tt class="py-op">.</tt><tt class="py-base-class">SGMLParser</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="InterProParser-expanded"><a name="L55"></a><tt class="py-lineno"> 55</tt>  <tt class="py-line">    <tt class="py-docstring">"""Parses InterPro sequence data into a Record object.</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="InterProParser.reset"></a><div id="InterProParser.reset-def"><a name="L58"></a><tt class="py-lineno"> 58</tt> <a class="py-toggle" href="#" id="InterProParser.reset-toggle" onclick="return toggle('InterProParser.reset');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#reset">reset</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.reset-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.reset-expanded"><a name="L59"></a><tt class="py-lineno"> 59</tt>  <tt class="py-line">        <tt class="py-name">sgmllib</tt><tt class="py-op">.</tt><tt class="py-name">SGMLParser</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method Bio.Blast.NCBIXML.BlastParser.reset()=Bio.Blast.NCBIXML.BlastParser-class.html#reset,Method Bio.InterPro.InterProParser.reset()=Bio.InterPro.InterProParser-class.html#reset,Method Bio.LocusLink.web_parse.LocusLinkParser.reset()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#reset,Method Bio.Ndb.NdbParser.reset()=Bio.Ndb.NdbParser-class.html#reset,Method Bio.NetCatch.ExtractUrls.reset()=Bio.NetCatch.ExtractUrls-class.html#reset"><a title="Bio.Blast.NCBIXML.BlastParser.reset
Bio.InterPro.InterProParser.reset
Bio.LocusLink.web_parse.LocusLinkParser.reset
Bio.Ndb.NdbParser.reset
Bio.NetCatch.ExtractUrls.reset" class="py-name" href="#" onclick="return doclink('link-28', 'reset', 'link-28');">reset</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt> <tt class="py-op">)</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method Bio.EUtils.POM.ElementNode.text()=Bio.EUtils.POM.ElementNode-class.html#text,Method Bio.Prosite.Prodoc._RecordConsumer.text()=Bio.Prosite.Prodoc._RecordConsumer-class.html#text,Variable Martel.test.test_Iterator.text=Martel.test.test_Iterator-module.html#text,Variable Martel.test.test_ParseRecords.text=Martel.test.test_ParseRecords-module.html#text"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-29', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt> <tt class="py-op">=</tt> <tt id="link-30" class="py-name" targets="Module Bio.Blast.Record=Bio.Blast.Record-module.html,Module Bio.CDD.Record=Bio.CDD.Record-module.html,Class Bio.CDD.Record.Record=Bio.CDD.Record.Record-class.html,Class Bio.Cluster.Record=Bio.Cluster.Record-class.html,Class Bio.Compass.Record=Bio.Compass.Record-class.html,Module Bio.ECell.Record=Bio.ECell.Record-module.html,Class Bio.ECell.Record.Record=Bio.ECell.Record.Record-class.html,Class Bio.Fasta.Record=Bio.Fasta.Record-class.html,Module Bio.GenBank.Record=Bio.GenBank.Record-module.html,Class Bio.GenBank.Record.Record=Bio.GenBank.Record.Record-class.html,Module Bio.Geo.Record=Bio.Geo.Record-module.html,Class Bio.Geo.Record.Record=Bio.Geo.Record.Record-class.html,Class Bio.Gobase.Record=Bio.Gobase.Record-class.html,Module Bio.IntelliGenetics.Record=Bio.IntelliGenetics.Record-module.html,Class Bio.IntelliGenetics.Record.Record=Bio.IntelliGenetics.Record.Record-class.html,Class Bio.InterPro.Record=Bio.InterPro.Record-class.html,Class Bio.KEGG.Compound.Record=Bio.KEGG.Compound.Record-class.html,Class Bio.KEGG.Enzyme.Record=Bio.KEGG.Enzyme.Record-class.html,Class Bio.LocusLink.Record=Bio.LocusLink.Record-class.html,Class Bio.LocusLink.web_parse.Record=Bio.LocusLink.web_parse.Record-class.html,Class Bio.Medline.Record=Bio.Medline.Record-class.html,Module Bio.MetaTool.Record=Bio.MetaTool.Record-module.html,Class Bio.MetaTool.Record.Record=Bio.MetaTool.Record.Record-class.html,Module Bio.NBRF.Record=Bio.NBRF.Record-module.html,Class Bio.NBRF.Record.Record=Bio.NBRF.Record.Record-class.html,Class Bio.Ndb.Record=Bio.Ndb.Record-class.html,Class Bio.PopGen.FDist.Record=Bio.PopGen.FDist.Record-class.html,Class Bio.PopGen.GenePop.Record=Bio.PopGen.GenePop.Record-class.html,Class Bio.Prosite.Prodoc.Record=Bio.Prosite.Prodoc.Record-class.html,Class Bio.Prosite.Record=Bio.Prosite.Record-class.html,Class Bio.Rebase.Record=Bio.Rebase.Record-class.html,Class Bio.SCOP.Cla.Record=Bio.SCOP.Cla.Record-class.html,Class Bio.SCOP.Des.Record=Bio.SCOP.Des.Record-class.html,Class Bio.SCOP.Dom.Record=Bio.SCOP.Dom.Record-class.html,Class Bio.SCOP.Hie.Record=Bio.SCOP.Hie.Record-class.html,Module Bio.Saf.Record=Bio.Saf.Record-module.html,Class Bio.Saf.Record.Record=Bio.Saf.Record.Record-class.html,Class Bio.Sequencing.Phd.Record=Bio.Sequencing.Phd.Record-class.html,Class Bio.SwissProt.KeyWList.Record=Bio.SwissProt.KeyWList.Record-class.html,Class Bio.SwissProt.SProt.Record=Bio.SwissProt.SProt.Record-class.html"><a title="Bio.Blast.Record
Bio.CDD.Record
Bio.CDD.Record.Record
Bio.Cluster.Record
Bio.Compass.Record
Bio.ECell.Record
Bio.ECell.Record.Record
Bio.Fasta.Record
Bio.GenBank.Record
Bio.GenBank.Record.Record
Bio.Geo.Record
Bio.Geo.Record.Record
Bio.Gobase.Record
Bio.IntelliGenetics.Record
Bio.IntelliGenetics.Record.Record
Bio.InterPro.Record
Bio.KEGG.Compound.Record
Bio.KEGG.Enzyme.Record
Bio.LocusLink.Record
Bio.LocusLink.web_parse.Record
Bio.Medline.Record
Bio.MetaTool.Record
Bio.MetaTool.Record.Record
Bio.NBRF.Record
Bio.NBRF.Record.Record
Bio.Ndb.Record
Bio.PopGen.FDist.Record
Bio.PopGen.GenePop.Record
Bio.Prosite.Prodoc.Record
Bio.Prosite.Record
Bio.Rebase.Record
Bio.SCOP.Cla.Record
Bio.SCOP.Des.Record
Bio.SCOP.Dom.Record
Bio.SCOP.Hie.Record
Bio.Saf.Record
Bio.Saf.Record.Record
Bio.Sequencing.Phd.Record
Bio.SwissProt.KeyWList.Record
Bio.SwissProt.SProt.Record" class="py-name" href="#" onclick="return doclink('link-30', 'Record', 'link-30');">Record</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Database'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Accession'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Name'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Dates'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Type'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Parent'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Process'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Function'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Component'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Signatures'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Abstract'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Examples'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'References'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Database links'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'title'</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
</div><a name="L80"></a><tt class="py-lineno"> 80</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.parse"></a><div id="InterProParser.parse-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="InterProParser.parse-toggle" onclick="return toggle('InterProParser.parse');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#parse">parse</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.parse-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.parse-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="Bio.Blast.NCBIXML.BlastParser.reset
Bio.InterPro.InterProParser.reset
Bio.LocusLink.web_parse.LocusLinkParser.reset
Bio.Ndb.NdbParser.reset
Bio.NetCatch.ExtractUrls.reset" class="py-name" href="#" onclick="return doclink('link-31', 'reset', 'link-28');">reset</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name" targets="Method Bio.Affy.CelFile.CelScanner.feed()=Bio.Affy.CelFile.CelScanner-class.html#feed,Method Bio.AlignAce.Scanner.AlignAceScanner.feed()=Bio.AlignAce.Scanner.AlignAceScanner-class.html#feed,Method Bio.AlignAce.Scanner.CompareAceScanner.feed()=Bio.AlignAce.Scanner.CompareAceScanner-class.html#feed,Method Bio.Blast.NCBIStandalone._Scanner.feed()=Bio.Blast.NCBIStandalone._Scanner-class.html#feed,Method Bio.Blast.NCBIWWW._Scanner.feed()=Bio.Blast.NCBIWWW._Scanner-class.html#feed,Method Bio.CDD._Scanner.feed()=Bio.CDD._Scanner-class.html#feed,Method Bio.Compass._Scanner.feed()=Bio.Compass._Scanner-class.html#feed,Method Bio.ECell._Scanner.feed()=Bio.ECell._Scanner-class.html#feed,Method Bio.Emboss.Primer._Primer3Scanner.feed()=Bio.Emboss.Primer._Primer3Scanner-class.html#feed,Method Bio.Emboss.Primer._PrimerSearchScanner.feed()=Bio.Emboss.Primer._PrimerSearchScanner-class.html#feed,Method Bio.Enzyme._Scanner.feed()=Bio.Enzyme._Scanner-class.html#feed,Method Bio.GenBank.Scanner.InsdcScanner.feed()=Bio.GenBank.Scanner.InsdcScanner-class.html#feed,Method Bio.Gobase._Scanner.feed()=Bio.Gobase._Scanner-class.html#feed,Method Bio.IntelliGenetics._Scanner.feed()=Bio.IntelliGenetics._Scanner-class.html#feed,Method Bio.InterPro.InterProParser.feed()=Bio.InterPro.InterProParser-class.html#feed,Method Bio.LocusLink._Scanner.feed()=Bio.LocusLink._Scanner-class.html#feed,Method Bio.LocusLink.web_parse.LocusLinkParser.feed()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#feed,Method Bio.MEME.Parser._MASTScanner.feed()=Bio.MEME.Parser._MASTScanner-class.html#feed,Method Bio.MEME.Parser._MEMEScanner.feed()=Bio.MEME.Parser._MEMEScanner-class.html#feed,Method Bio.Medline._Scanner.feed()=Bio.Medline._Scanner-class.html#feed,Method Bio.MetaTool._Scanner.feed()=Bio.MetaTool._Scanner-class.html#feed,Method Bio.NBRF._Scanner.feed()=Bio.NBRF._Scanner-class.html#feed,Method Bio.Ndb.NdbParser.feed()=Bio.Ndb.NdbParser-class.html#feed,Method Bio.NetCatch.ExtractUrls.feed()=Bio.NetCatch.ExtractUrls-class.html#feed,Method Bio.PopGen.FDist._Scanner.feed()=Bio.PopGen.FDist._Scanner-class.html#feed,Method Bio.PopGen.GenePop._Scanner.feed()=Bio.PopGen.GenePop._Scanner-class.html#feed,Method Bio.Prosite.Prodoc._Scanner.feed()=Bio.Prosite.Prodoc._Scanner-class.html#feed,Method Bio.Prosite._Scanner.feed()=Bio.Prosite._Scanner-class.html#feed,Method Bio.Rebase._Scanner.feed()=Bio.Rebase._Scanner-class.html#feed,Method Bio.Saf._Scanner.feed()=Bio.Saf._Scanner-class.html#feed,Method Bio.Sequencing.Ace._Scanner.feed()=Bio.Sequencing.Ace._Scanner-class.html#feed,Method Bio.Sequencing.Phd._Scanner.feed()=Bio.Sequencing.Phd._Scanner-class.html#feed,Method Bio.SwissProt.KeyWList._Scanner.feed()=Bio.SwissProt.KeyWList._Scanner-class.html#feed,Method Bio.SwissProt.SProt._Scanner.feed()=Bio.SwissProt.SProt._Scanner-class.html#feed,Method Bio.UniGene._Scanner.feed()=Bio.UniGene._Scanner-class.html#feed"><a title="Bio.Affy.CelFile.CelScanner.feed
Bio.AlignAce.Scanner.AlignAceScanner.feed
Bio.AlignAce.Scanner.CompareAceScanner.feed
Bio.Blast.NCBIStandalone._Scanner.feed
Bio.Blast.NCBIWWW._Scanner.feed
Bio.CDD._Scanner.feed
Bio.Compass._Scanner.feed
Bio.ECell._Scanner.feed
Bio.Emboss.Primer._Primer3Scanner.feed
Bio.Emboss.Primer._PrimerSearchScanner.feed
Bio.Enzyme._Scanner.feed
Bio.GenBank.Scanner.InsdcScanner.feed
Bio.Gobase._Scanner.feed
Bio.IntelliGenetics._Scanner.feed
Bio.InterPro.InterProParser.feed
Bio.LocusLink._Scanner.feed
Bio.LocusLink.web_parse.LocusLinkParser.feed
Bio.MEME.Parser._MASTScanner.feed
Bio.MEME.Parser._MEMEScanner.feed
Bio.Medline._Scanner.feed
Bio.MetaTool._Scanner.feed
Bio.NBRF._Scanner.feed
Bio.Ndb.NdbParser.feed
Bio.NetCatch.ExtractUrls.feed
Bio.PopGen.FDist._Scanner.feed
Bio.PopGen.GenePop._Scanner.feed
Bio.Prosite.Prodoc._Scanner.feed
Bio.Prosite._Scanner.feed
Bio.Rebase._Scanner.feed
Bio.Saf._Scanner.feed
Bio.Sequencing.Ace._Scanner.feed
Bio.Sequencing.Phd._Scanner.feed
Bio.SwissProt.KeyWList._Scanner.feed
Bio.SwissProt.SProt._Scanner.feed
Bio.UniGene._Scanner.feed" class="py-name" href="#" onclick="return doclink('link-32', 'feed', 'link-32');">feed</a></tt><tt class="py-op">(</tt><tt id="link-33" class="py-name" targets="Variable Bio.LocusLink.web_parse.handle=Bio.LocusLink.web_parse-module.html#handle,Variable Bio.Ndb.handle=Bio.Ndb-module.html#handle"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-33', 'handle', 'link-33');">handle</a></tt><tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt> </tt>
</div><a name="L85"></a><tt class="py-lineno"> 85</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.feed"></a><div id="InterProParser.feed-def"><a name="L86"></a><tt class="py-lineno"> 86</tt> <a class="py-toggle" href="#" id="InterProParser.feed-toggle" onclick="return toggle('InterProParser.feed');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#feed">feed</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">handle</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.feed-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.feed-expanded"><a name="L87"></a><tt class="py-lineno"> 87</tt>  <tt class="py-line">        <tt class="py-docstring">"""feed(self, handle )</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt>  <tt class="py-line"><tt class="py-docstring">        Feed in interpro data for scanning.  handle is a file-like object</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt>  <tt class="py-line"><tt class="py-docstring">        containing interpro data.  consumer is a Consumer object that will</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt>  <tt class="py-line"><tt class="py-docstring">        receive events as the ndb data is scanned.</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt id="link-34" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-34', 'handle', 'link-33');">handle</a></tt><tt class="py-op">,</tt> <tt id="link-35" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-35', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-36" class="py-name" targets="Class Bio.File.UndoHandle=Bio.File.UndoHandle-class.html"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-36', 'UndoHandle', 'link-36');">UndoHandle</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt>  <tt class="py-line">            <tt class="py-name">uhandle</tt> <tt class="py-op">=</tt> <tt id="link-37" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-37', 'handle', 'link-33');">handle</a></tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt>  <tt class="py-line">            <tt class="py-name">uhandle</tt> <tt class="py-op">=</tt> <tt id="link-38" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-38', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-39', 'UndoHandle', 'link-36');">UndoHandle</a></tt><tt class="py-op">(</tt><tt id="link-40" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-40', 'handle', 'link-33');">handle</a></tt><tt class="py-op">)</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt>  <tt class="py-line">        <tt id="link-41" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-41', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt>  <tt class="py-line">        <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt>  <tt class="py-line">            <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">uhandle</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Method Bio.EUtils.ReseekFile.ReseekFile.readline()=Bio.EUtils.ReseekFile.ReseekFile-class.html#readline,Method Bio.File.SGMLHandle.readline()=Bio.File.SGMLHandle-class.html#readline,Method Bio.File.UndoHandle.readline()=Bio.File.UndoHandle-class.html#readline,Method Bio.SGMLExtractor.SGMLExtractorHandle.readline()=Bio.SGMLExtractor.SGMLExtractorHandle-class.html#readline"><a title="Bio.EUtils.ReseekFile.ReseekFile.readline
Bio.File.SGMLHandle.readline
Bio.File.UndoHandle.readline
Bio.SGMLExtractor.SGMLExtractorHandle.readline" class="py-name" href="#" onclick="return doclink('link-42', 'readline', 'link-42');">readline</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">line</tt><tt class="py-op">:</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt>  <tt class="py-line">                <tt class="py-keyword">break</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt>  <tt class="py-line">            <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name" targets="Class Bio.EUtils.DTDs.LinkOut.strip=Bio.EUtils.DTDs.LinkOut.strip-class.html,Method Bio.File.SGMLStripper.strip()=Bio.File.SGMLStripper-class.html#strip,Method Bio.SGMLExtractor.SGMLExtractor.strip()=Bio.SGMLExtractor.SGMLExtractor-class.html#strip"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-43', 'strip', 'link-43');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt> <tt class="py-op">-</tt><tt class="py-number">7</tt><tt class="py-op">:</tt> <tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'&lt;/HTML&gt;'</tt><tt class="py-op">:</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt>  <tt class="py-line">                <tt class="py-keyword">break</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt>  <tt class="py-line">            <tt id="link-44" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-44', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt id="link-45" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-45', 'text', 'link-29');">text</a></tt> <tt class="py-op">+</tt> <tt class="py-string">' '</tt> <tt class="py-op">+</tt> <tt class="py-name">line</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt>  <tt class="py-line"> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt>  <tt class="py-line">        <tt class="py-name">sgmllib</tt><tt class="py-op">.</tt><tt class="py-name">SGMLParser</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="Bio.Affy.CelFile.CelScanner.feed
Bio.AlignAce.Scanner.AlignAceScanner.feed
Bio.AlignAce.Scanner.CompareAceScanner.feed
Bio.Blast.NCBIStandalone._Scanner.feed
Bio.Blast.NCBIWWW._Scanner.feed
Bio.CDD._Scanner.feed
Bio.Compass._Scanner.feed
Bio.ECell._Scanner.feed
Bio.Emboss.Primer._Primer3Scanner.feed
Bio.Emboss.Primer._PrimerSearchScanner.feed
Bio.Enzyme._Scanner.feed
Bio.GenBank.Scanner.InsdcScanner.feed
Bio.Gobase._Scanner.feed
Bio.IntelliGenetics._Scanner.feed
Bio.InterPro.InterProParser.feed
Bio.LocusLink._Scanner.feed
Bio.LocusLink.web_parse.LocusLinkParser.feed
Bio.MEME.Parser._MASTScanner.feed
Bio.MEME.Parser._MEMEScanner.feed
Bio.Medline._Scanner.feed
Bio.MetaTool._Scanner.feed
Bio.NBRF._Scanner.feed
Bio.Ndb.NdbParser.feed
Bio.NetCatch.ExtractUrls.feed
Bio.PopGen.FDist._Scanner.feed
Bio.PopGen.GenePop._Scanner.feed
Bio.Prosite.Prodoc._Scanner.feed
Bio.Prosite._Scanner.feed
Bio.Rebase._Scanner.feed
Bio.Saf._Scanner.feed
Bio.Sequencing.Ace._Scanner.feed
Bio.Sequencing.Phd._Scanner.feed
Bio.SwissProt.KeyWList._Scanner.feed
Bio.SwissProt.SProt._Scanner.feed
Bio.UniGene._Scanner.feed" class="py-name" href="#" onclick="return doclink('link-46', 'feed', 'link-32');">feed</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-47" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-47', 'text', 'link-29');">text</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L109"></a><tt class="py-lineno">109</tt>  <tt class="py-line"> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.handle_data"></a><div id="InterProParser.handle_data-def"><a name="L111"></a><tt class="py-lineno">111</tt> <a class="py-toggle" href="#" id="InterProParser.handle_data-toggle" onclick="return toggle('InterProParser.handle_data');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#handle_data">handle_data</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">newtext</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.handle_data-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.handle_data-expanded"><a name="L112"></a><tt class="py-lineno">112</tt>  <tt class="py-line">        <tt class="py-name">newtext</tt> <tt class="py-op">=</tt> <tt class="py-name">newtext</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-48', 'strip', 'link-43');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-49', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-50', 'text', 'link-29');">text</a></tt> <tt class="py-op">+</tt> <tt class="py-name">newtext</tt> </tt>
</div><a name="L114"></a><tt class="py-lineno">114</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_table"></a><div id="InterProParser.start_table-def"><a name="L115"></a><tt class="py-lineno">115</tt> <a class="py-toggle" href="#" id="InterProParser.start_table-toggle" onclick="return toggle('InterProParser.start_table');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_table">start_table</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_table-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_table-expanded"><a name="L116"></a><tt class="py-lineno">116</tt>  <tt class="py-line">        <tt class="py-name">dictionary</tt> <tt class="py-op">=</tt> <tt class="py-name">dict</tt><tt class="py-op">(</tt> <tt id="link-51" class="py-name" targets="Variable Martel.Time.attrs=Martel.Time-module.html#attrs"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-51', 'attrs', 'link-51');">attrs</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt id="link-52" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-52', 'key', 'link-9');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">dictionary</tt><tt class="py-op">:</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt>  <tt class="py-line">            <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">dictionary</tt><tt class="py-op">[</tt><tt id="link-53" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-53', 'key', 'link-9');">key</a></tt><tt class="py-op">]</tt> </tt>
</div><a name="L119"></a><tt class="py-lineno">119</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_h2"></a><div id="InterProParser.start_h2-def"><a name="L120"></a><tt class="py-lineno">120</tt> <a class="py-toggle" href="#" id="InterProParser.start_h2-toggle" onclick="return toggle('InterProParser.start_h2');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_h2">start_h2</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_h2-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_h2-expanded"><a name="L121"></a><tt class="py-lineno">121</tt>  <tt class="py-line">        <tt class="py-keyword">pass</tt> </tt>
</div><a name="L122"></a><tt class="py-lineno">122</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_h2"></a><div id="InterProParser.end_h2-def"><a name="L123"></a><tt class="py-lineno">123</tt> <a class="py-toggle" href="#" id="InterProParser.end_h2-toggle" onclick="return toggle('InterProParser.end_h2');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_h2">end_h2</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_h2-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_h2-expanded"><a name="L124"></a><tt class="py-lineno">124</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'chugging_along'</tt> </tt>
</div><a name="L125"></a><tt class="py-lineno">125</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_td"></a><div id="InterProParser.start_td-def"><a name="L126"></a><tt class="py-lineno">126</tt> <a class="py-toggle" href="#" id="InterProParser.start_td-toggle" onclick="return toggle('InterProParser.start_td');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_td">start_td</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_td-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_td-expanded"><a name="L127"></a><tt class="py-lineno">127</tt>  <tt class="py-line">        <tt class="py-name">dictionary</tt> <tt class="py-op">=</tt> <tt class="py-name">dict</tt><tt class="py-op">(</tt> <tt id="link-54" class="py-name"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-54', 'attrs', 'link-51');">attrs</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'chugging_along'</tt><tt class="py-op">:</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">dictionary</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Method Bio.Crystal.Crystal.has_key()=Bio.Crystal.Crystal-class.html#has_key,Method Bio.EUtils.POM.ElementNode.has_key()=Bio.EUtils.POM.ElementNode-class.html#has_key,Method Bio.GenBank.NCBIDictionary.has_key()=Bio.GenBank.NCBIDictionary-class.html#has_key,Method Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key()=Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key,Method Bio.PDB.FragmentMapper'.FragmentMapper.has_key()=Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#has_key,Method Bio.Prosite.ExPASyDictionary.has_key()=Bio.Prosite.ExPASyDictionary-class.html#has_key,Method Bio.Prosite.Prodoc.ExPASyDictionary.has_key()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#has_key,Method Bio.PubMed.Dictionary.has_key()=Bio.PubMed.Dictionary-class.html#has_key,Method Bio.SwissProt.SProt.ExPASyDictionary.has_key()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#has_key,Method Martel.Parser.MartelAttributeList.has_key()=Martel.Parser.MartelAttributeList-class.html#has_key"><a title="Bio.Crystal.Crystal.has_key
Bio.EUtils.POM.ElementNode.has_key
Bio.GenBank.NCBIDictionary.has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key
Bio.PDB.FragmentMapper'.FragmentMapper.has_key
Bio.Prosite.ExPASyDictionary.has_key
Bio.Prosite.Prodoc.ExPASyDictionary.has_key
Bio.PubMed.Dictionary.has_key
Bio.SwissProt.SProt.ExPASyDictionary.has_key
Martel.Parser.MartelAttributeList.has_key" class="py-name" href="#" onclick="return doclink('link-55', 'has_key', 'link-55');">has_key</a></tt><tt class="py-op">(</tt> <tt class="py-string">'class'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">dictionary</tt><tt class="py-op">[</tt> <tt class="py-string">'class'</tt> <tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'tag'</tt><tt class="py-op">:</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_tag'</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name" targets="Method Bio.InterPro.InterProParser._flush_text()=Bio.InterPro.InterProParser-class.html#_flush_text,Method Bio.Ndb.NdbParser._flush_text()=Bio.Ndb.NdbParser-class.html#_flush_text"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-56', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt>  <tt class="py-line">                <tt class="py-keyword">elif</tt> <tt class="py-name">dictionary</tt><tt class="py-op">[</tt> <tt class="py-string">'class'</tt> <tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'inf'</tt><tt class="py-op">:</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'waiting_inf'</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-57', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L136"></a><tt class="py-lineno">136</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_td"></a><div id="InterProParser.end_td-def"><a name="L137"></a><tt class="py-lineno">137</tt> <a class="py-toggle" href="#" id="InterProParser.end_td-toggle" onclick="return toggle('InterProParser.end_td');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_td">end_td</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_td-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_td-expanded"><a name="L138"></a><tt class="py-lineno">138</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'waiting_tag'</tt><tt class="py-op">:</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-58', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'chugging_along'</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'waiting_inf'</tt><tt class="py-op">:</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt>  <tt class="py-line">            <tt id="link-59" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-59', 'key', 'link-9');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="Bio.Crystal.Crystal.has_key
Bio.EUtils.POM.ElementNode.has_key
Bio.GenBank.NCBIDictionary.has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key
Bio.PDB.FragmentMapper'.FragmentMapper.has_key
Bio.Prosite.ExPASyDictionary.has_key
Bio.Prosite.Prodoc.ExPASyDictionary.has_key
Bio.PubMed.Dictionary.has_key
Bio.SwissProt.SProt.ExPASyDictionary.has_key
Martel.Parser.MartelAttributeList.has_key" class="py-name" href="#" onclick="return doclink('link-60', 'has_key', 'link-55');">has_key</a></tt><tt class="py-op">(</tt> <tt id="link-61" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-61', 'key', 'link-9');">key</a></tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt>  <tt class="py-line">                <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-62', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt id="link-63" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-63', 'key', 'link-9');">key</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'Signatures'</tt><tt class="py-op">:</tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt>  <tt class="py-line">                    <tt class="py-keyword">pass</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt>  <tt class="py-line">                <tt class="py-keyword">elif</tt> <tt id="link-64" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-64', 'key', 'link-9');">key</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'Database links'</tt><tt class="py-op">:</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt>  <tt class="py-line">                    <tt class="py-keyword">pass</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt>  <tt class="py-line">                <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt id="link-65" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-65', 'key', 'link-9');">key</a></tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">val</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'chugging_along'</tt> </tt>
</div><a name="L153"></a><tt class="py-lineno">153</tt>  <tt class="py-line"> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_ul"></a><div id="InterProParser.start_ul-def"><a name="L155"></a><tt class="py-lineno">155</tt> <a class="py-toggle" href="#" id="InterProParser.start_ul-toggle" onclick="return toggle('InterProParser.start_ul');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_ul">start_ul</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_ul-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_ul-expanded"><a name="L156"></a><tt class="py-lineno">156</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">==</tt> <tt class="py-string">'Examples'</tt><tt class="py-op">:</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'examples'</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-66', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L159"></a><tt class="py-lineno">159</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_ul"></a><div id="InterProParser.end_ul-def"><a name="L160"></a><tt class="py-lineno">160</tt> <a class="py-toggle" href="#" id="InterProParser.end_ul-toggle" onclick="return toggle('InterProParser.end_ul');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_ul">end_ul</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_ul-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_ul-expanded"><a name="L161"></a><tt class="py-lineno">161</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'chugging_along'</tt> </tt>
</div><a name="L163"></a><tt class="py-lineno">163</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_ol"></a><div id="InterProParser.start_ol-def"><a name="L164"></a><tt class="py-lineno">164</tt> <a class="py-toggle" href="#" id="InterProParser.start_ol-toggle" onclick="return toggle('InterProParser.start_ol');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_ol">start_ol</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_ol-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_ol-expanded"><a name="L165"></a><tt class="py-lineno">165</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">==</tt> <tt class="py-string">'References'</tt><tt class="py-op">:</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'references'</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'pubmed_id'</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-67', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_references</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
</div><a name="L170"></a><tt class="py-lineno">170</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_ol"></a><div id="InterProParser.end_ol-def"><a name="L171"></a><tt class="py-lineno">171</tt> <a class="py-toggle" href="#" id="InterProParser.end_ol-toggle" onclick="return toggle('InterProParser.end_ol');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_ol">end_ol</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_ol-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_ol-expanded"><a name="L172"></a><tt class="py-lineno">172</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_references</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name" targets="Method Bio.Crystal.Chain.append()=Bio.Crystal.Chain-class.html#append,Method Bio.EUtils.POM.ElementNode.append()=Bio.EUtils.POM.ElementNode-class.html#append,Method Bio.EUtils.sourcegen.SourceFile.append()=Bio.EUtils.sourcegen.SourceFile-class.html#append,Method Bio.SCOP.Raf.SeqMap.append()=Bio.SCOP.Raf.SeqMap-class.html#append,Method Bio.Seq.MutableSeq.append()=Bio.Seq.MutableSeq-class.html#append,Method Bio.Wise.psw.Alignment.append()=Bio.Wise.psw.Alignment-class.html#append,Method Bio.Wise.psw.AlignmentColumn.append()=Bio.Wise.psw.AlignmentColumn-class.html#append,Method Martel.msre_parse.SubPattern.append()=Martel.msre_parse.SubPattern-class.html#append"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-68', 'append', 'link-68');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt> <tt class="py-op">)</tt> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'References'</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_references</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'chugging_along'</tt> </tt>
</div><a name="L176"></a><tt class="py-lineno">176</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_li"></a><div id="InterProParser.start_li-def"><a name="L177"></a><tt class="py-lineno">177</tt> <a class="py-toggle" href="#" id="InterProParser.start_li-toggle" onclick="return toggle('InterProParser.start_li');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_li">start_li</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_li-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_li-expanded"><a name="L178"></a><tt class="py-lineno">178</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'pubmed_id'</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-69', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt> <tt class="py-op">!=</tt> <tt class="py-string">''</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_references</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-70', 'append', 'link-68');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt> <tt class="py-op">)</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt> <tt class="py-op">=</tt> <tt id="link-71" class="py-name"><a title="Bio.GenBank.Record.Reference
Bio.Prosite.Prodoc.Reference
Bio.SeqFeature.Reference
Bio.SwissProt.SProt.Reference" class="py-name" href="#" onclick="return doclink('link-71', 'Reference', 'link-4');">Reference</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L184"></a><tt class="py-lineno">184</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_li"></a><div id="InterProParser.end_li-def"><a name="L185"></a><tt class="py-lineno">185</tt> <a class="py-toggle" href="#" id="InterProParser.end_li-toggle" onclick="return toggle('InterProParser.end_li');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_li">end_li</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_li-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_li-expanded"><a name="L186"></a><tt class="py-lineno">186</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'examples'</tt><tt class="py-op">:</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt>  <tt class="py-line">            <tt id="link-72" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-72', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-73', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Examples'</tt> <tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-74', 'append', 'link-68');">append</a></tt><tt class="py-op">(</tt> <tt id="link-75" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-75', 'text', 'link-29');">text</a></tt> <tt class="py-op">)</tt> </tt>
</div><a name="L189"></a><tt class="py-lineno">189</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_a"></a><div id="InterProParser.start_a-def"><a name="L190"></a><tt class="py-lineno">190</tt> <a class="py-toggle" href="#" id="InterProParser.start_a-toggle" onclick="return toggle('InterProParser.start_a');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_a">start_a</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_a-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_a-expanded"><a name="L191"></a><tt class="py-lineno">191</tt>  <tt class="py-line">        <tt class="py-name">dictionary</tt> <tt class="py-op">=</tt> <tt class="py-name">dict</tt><tt class="py-op">(</tt> <tt id="link-76" class="py-name"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-76', 'attrs', 'link-51');">attrs</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'pubmed_id'</tt><tt class="py-op">:</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">dictionary</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="Bio.Crystal.Crystal.has_key
Bio.EUtils.POM.ElementNode.has_key
Bio.GenBank.NCBIDictionary.has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key
Bio.PDB.FragmentMapper'.FragmentMapper.has_key
Bio.Prosite.ExPASyDictionary.has_key
Bio.Prosite.Prodoc.ExPASyDictionary.has_key
Bio.PubMed.Dictionary.has_key
Bio.SwissProt.SProt.ExPASyDictionary.has_key
Martel.Parser.MartelAttributeList.has_key" class="py-name" href="#" onclick="return doclink('link-77', 'has_key', 'link-55');">has_key</a></tt><tt class="py-op">(</tt> <tt class="py-string">'name'</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.pubmed_id()=Bio.GenBank._FeatureConsumer-class.html#pubmed_id,Method Bio.GenBank._RecordConsumer.pubmed_id()=Bio.GenBank._RecordConsumer-class.html#pubmed_id,Method Bio.Medline._RecordConsumer.pubmed_id()=Bio.Medline._RecordConsumer-class.html#pubmed_id"><a title="Bio.GenBank._FeatureConsumer.pubmed_id
Bio.GenBank._RecordConsumer.pubmed_id
Bio.Medline._RecordConsumer.pubmed_id" class="py-name" href="#" onclick="return doclink('link-78', 'pubmed_id', 'link-78');">pubmed_id</a></tt> <tt class="py-op">=</tt> <tt class="py-name">dictionary</tt><tt class="py-op">[</tt> <tt class="py-string">'name'</tt> <tt class="py-op">]</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'authors'</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'journal'</tt><tt class="py-op">:</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.journal()=Bio.GenBank._FeatureConsumer-class.html#journal,Method Bio.GenBank._RecordConsumer.journal()=Bio.GenBank._RecordConsumer-class.html#journal"><a title="Bio.GenBank._FeatureConsumer.journal
Bio.GenBank._RecordConsumer.journal" class="py-name" href="#" onclick="return doclink('link-79', 'journal', 'link-79');">journal</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-80', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'medline_id'</tt> </tt>
</div><a name="L200"></a><tt class="py-lineno">200</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_a"></a><div id="InterProParser.end_a-def"><a name="L201"></a><tt class="py-lineno">201</tt> <a class="py-toggle" href="#" id="InterProParser.end_a-toggle" onclick="return toggle('InterProParser.end_a');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_a">end_a</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_a-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_a-expanded"><a name="L202"></a><tt class="py-lineno">202</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'medline_id'</tt><tt class="py-op">:</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt>  <tt class="py-line">                <tt id="link-81" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-81', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-82', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt>  <tt class="py-line">                <tt class="py-name">cols</tt> <tt class="py-op">=</tt> <tt id="link-83" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-83', 'text', 'link-29');">text</a></tt><tt class="py-op">.</tt><tt id="link-84" class="py-name" targets="Method Bio.Nexus.Trees.Tree.split()=Bio.Nexus.Trees.Tree-class.html#split,Method Bio.Restriction.Restriction.RestrictionBatch.split()=Bio.Restriction.Restriction.RestrictionBatch-class.html#split"><a title="Bio.Nexus.Trees.Tree.split
Bio.Restriction.Restriction.RestrictionBatch.split" class="py-name" href="#" onclick="return doclink('link-84', 'split', 'link-84');">split</a></tt><tt class="py-op">(</tt> <tt class="py-string">':'</tt> <tt class="py-op">)</tt> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt>  <tt class="py-line">                <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt>  <tt class="py-line">                    <tt id="link-85" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.medline_id()=Bio.GenBank._FeatureConsumer-class.html#medline_id,Method Bio.GenBank._RecordConsumer.medline_id()=Bio.GenBank._RecordConsumer-class.html#medline_id"><a title="Bio.GenBank._FeatureConsumer.medline_id
Bio.GenBank._RecordConsumer.medline_id" class="py-name" href="#" onclick="return doclink('link-85', 'medline_id', 'link-85');">medline_id</a></tt> <tt class="py-op">=</tt> <tt class="py-name">cols</tt><tt class="py-op">[</tt> <tt class="py-number">1</tt> <tt class="py-op">]</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt>  <tt class="py-line">                <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt>  <tt class="py-line">                    <tt id="link-86" class="py-name"><a title="Bio.GenBank._FeatureConsumer.medline_id
Bio.GenBank._RecordConsumer.medline_id" class="py-name" href="#" onclick="return doclink('link-86', 'medline_id', 'link-85');">medline_id</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt>  <tt class="py-line">                <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt>  <tt class="py-line">                    <tt id="link-87" class="py-name"><a title="Bio.GenBank._FeatureConsumer.medline_id
Bio.GenBank._RecordConsumer.medline_id" class="py-name" href="#" onclick="return doclink('link-87', 'medline_id', 'link-85');">medline_id</a></tt> <tt class="py-op">=</tt> <tt id="link-88" class="py-name"><a title="Bio.GenBank._FeatureConsumer.medline_id
Bio.GenBank._RecordConsumer.medline_id" class="py-name" href="#" onclick="return doclink('link-88', 'medline_id', 'link-85');">medline_id</a></tt><tt class="py-op">[</tt> <tt class="py-op">:</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt> <tt class="py-op">]</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="Bio.GenBank._FeatureConsumer.medline_id
Bio.GenBank._RecordConsumer.medline_id" class="py-name" href="#" onclick="return doclink('link-89', 'medline_id', 'link-85');">medline_id</a></tt> <tt class="py-op">=</tt> <tt id="link-90" class="py-name"><a title="Bio.GenBank._FeatureConsumer.medline_id
Bio.GenBank._RecordConsumer.medline_id" class="py-name" href="#" onclick="return doclink('link-90', 'medline_id', 'link-85');">medline_id</a></tt> </tt>
</div><a name="L213"></a><tt class="py-lineno">213</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.do_br"></a><div id="InterProParser.do_br-def"><a name="L214"></a><tt class="py-lineno">214</tt> <a class="py-toggle" href="#" id="InterProParser.do_br-toggle" onclick="return toggle('InterProParser.do_br');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#do_br">do_br</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.do_br-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.do_br-expanded"><a name="L215"></a><tt class="py-lineno">215</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'authors'</tt><tt class="py-op">:</tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name" targets="Method Bio.GenBank._FeatureConsumer.authors()=Bio.GenBank._FeatureConsumer-class.html#authors,Method Bio.GenBank._RecordConsumer.authors()=Bio.GenBank._RecordConsumer-class.html#authors"><a title="Bio.GenBank._FeatureConsumer.authors
Bio.GenBank._RecordConsumer.authors" class="py-name" href="#" onclick="return doclink('link-91', 'authors', 'link-91');">authors</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-92', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'title'</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">==</tt> <tt class="py-string">'Signatures'</tt><tt class="py-op">:</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Signatures'</tt> <tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-93', 'append', 'link-68');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-94', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_key_waiting</tt> <tt class="py-op">==</tt> <tt class="py-string">'Database links'</tt><tt class="py-op">:</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">inter_pro_dict</tt><tt class="py-op">[</tt> <tt class="py-string">'Database links'</tt> <tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="Bio.Crystal.Chain.append
Bio.EUtils.POM.ElementNode.append
Bio.EUtils.sourcegen.SourceFile.append
Bio.SCOP.Raf.SeqMap.append
Bio.Seq.MutableSeq.append
Bio.Wise.psw.Alignment.append
Bio.Wise.psw.AlignmentColumn.append
Martel.msre_parse.SubPattern.append" class="py-name" href="#" onclick="return doclink('link-95', 'append', 'link-68');">append</a></tt><tt class="py-op">(</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-96', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">)</tt> </tt>
</div><a name="L223"></a><tt class="py-lineno">223</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.start_i"></a><div id="InterProParser.start_i-def"><a name="L224"></a><tt class="py-lineno">224</tt> <a class="py-toggle" href="#" id="InterProParser.start_i-toggle" onclick="return toggle('InterProParser.start_i');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#start_i">start_i</a><tt class="py-op">(</tt> <tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.start_i-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.start_i-expanded"><a name="L225"></a><tt class="py-lineno">225</tt>  <tt class="py-line">        <tt class="py-keyword">pass</tt> </tt>
</div><a name="L226"></a><tt class="py-lineno">226</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.end_i"></a><div id="InterProParser.end_i-def"><a name="L227"></a><tt class="py-lineno">227</tt> <a class="py-toggle" href="#" id="InterProParser.end_i-toggle" onclick="return toggle('InterProParser.end_i');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#end_i">end_i</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.end_i-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.end_i-expanded"><a name="L228"></a><tt class="py-lineno">228</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'title'</tt><tt class="py-op">:</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt>  <tt class="py-line">                <tt id="link-97" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-97', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="Bio.InterPro.InterProParser._flush_text
Bio.Ndb.NdbParser._flush_text" class="py-name" href="#" onclick="return doclink('link-98', '_flush_text', 'link-56');">_flush_text</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current_reference</tt><tt class="py-op">.</tt><tt id="link-99" class="py-name" targets="Method Bio.Blast.NCBIStandalone._AlignmentConsumer.title()=Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title,Method Bio.GenBank._FeatureConsumer.title()=Bio.GenBank._FeatureConsumer-class.html#title,Method Bio.GenBank._RecordConsumer.title()=Bio.GenBank._RecordConsumer-class.html#title,Method Bio.Medline._RecordConsumer.title()=Bio.Medline._RecordConsumer-class.html#title,Variable Bio.expressions.fasta.title=Bio.expressions.fasta-module.html#title"><a title="Bio.Blast.NCBIStandalone._AlignmentConsumer.title
Bio.GenBank._FeatureConsumer.title
Bio.GenBank._RecordConsumer.title
Bio.Medline._RecordConsumer.title
Bio.expressions.fasta.title" class="py-name" href="#" onclick="return doclink('link-99', 'title', 'link-99');">title</a></tt> <tt class="py-op">=</tt> <tt id="link-100" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-100', 'text', 'link-29');">text</a></tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">=</tt> <tt class="py-string">'journal'</tt> </tt>
</div><a name="L233"></a><tt class="py-lineno">233</tt>  <tt class="py-line"> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt>  <tt class="py-line"> </tt>
<a name="InterProParser.handle_starttag"></a><div id="InterProParser.handle_starttag-def"><a name="L235"></a><tt class="py-lineno">235</tt> <a class="py-toggle" href="#" id="InterProParser.handle_starttag-toggle" onclick="return toggle('InterProParser.handle_starttag');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#handle_starttag">handle_starttag</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">tag</tt><tt class="py-op">,</tt> <tt class="py-param">method</tt><tt class="py-op">,</tt> <tt class="py-param">attrs</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser.handle_starttag-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser.handle_starttag-expanded"><a name="L236"></a><tt class="py-lineno">236</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'references'</tt><tt class="py-op">:</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt id="link-101" class="py-name" targets="Variable Martel.Time.tag=Martel.Time-module.html#tag"><a title="Martel.Time.tag" class="py-name" href="#" onclick="return doclink('link-101', 'tag', 'link-101');">tag</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'li'</tt><tt class="py-op">:</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stack</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name" targets="Method Bio.Seq.MutableSeq.pop()=Bio.Seq.MutableSeq-class.html#pop"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-102', 'pop', 'link-102');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt>  <tt class="py-line">            <tt class="py-keyword">elif</tt> <tt id="link-103" class="py-name"><a title="Martel.Time.tag" class="py-name" href="#" onclick="return doclink('link-103', 'tag', 'link-101');">tag</a></tt> <tt class="py-op">==</tt> <tt class="py-string">'a'</tt><tt class="py-op">:</tt> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_reference_state</tt> <tt class="py-op">==</tt> <tt class="py-string">'pubmed_id'</tt><tt class="py-op">:</tt> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt>  <tt class="py-line">                    <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stack</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name"><a title="Bio.Seq.MutableSeq.pop" class="py-name" href="#" onclick="return doclink('link-104', 'pop', 'link-102');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt>  <tt class="py-line">        <tt class="py-name">method</tt><tt class="py-op">(</tt><tt id="link-105" class="py-name"><a title="Martel.Time.attrs" class="py-name" href="#" onclick="return doclink('link-105', 'attrs', 'link-51');">attrs</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L243"></a><tt class="py-lineno">243</tt>  <tt class="py-line"> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt>  <tt class="py-line"> </tt>
<a name="InterProParser._flush_text"></a><div id="InterProParser._flush_text-def"><a name="L245"></a><tt class="py-lineno">245</tt> <a class="py-toggle" href="#" id="InterProParser._flush_text-toggle" onclick="return toggle('InterProParser._flush_text');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro.InterProParser-class.html#_flush_text">_flush_text</a><tt class="py-op">(</tt> <tt class="py-param">self</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="InterProParser._flush_text-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="InterProParser._flush_text-expanded"><a name="L246"></a><tt class="py-lineno">246</tt>  <tt class="py-line">        <tt id="link-106" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-106', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-107', 'text', 'link-29');">text</a></tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.strip
Bio.File.SGMLStripper.strip
Bio.SGMLExtractor.SGMLExtractor.strip" class="py-name" href="#" onclick="return doclink('link-108', 'strip', 'link-43');">strip</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-109" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-109', 'text', 'link-29');">text</a></tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt id="link-110" class="py-name"><a title="Bio.EUtils.POM.ElementNode.text
Bio.Prosite.Prodoc._RecordConsumer.text
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text" class="py-name" href="#" onclick="return doclink('link-110', 'text', 'link-29');">text</a></tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
</div></div><a name="L249"></a><tt class="py-lineno">249</tt>  <tt class="py-line"> </tt>
<a name="pairlist_to_dict"></a><div id="pairlist_to_dict-def"><a name="L250"></a><tt class="py-lineno">250</tt> <a class="py-toggle" href="#" id="pairlist_to_dict-toggle" onclick="return toggle('pairlist_to_dict');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro-module.html#pairlist_to_dict">pairlist_to_dict</a><tt class="py-op">(</tt> <tt class="py-param">pairs</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="pairlist_to_dict-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="pairlist_to_dict-expanded"><a name="L251"></a><tt class="py-lineno">251</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">warnings</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt>  <tt class="py-line">    <tt class="py-name">warnings</tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"pairlist_to_dict was deprecated. Please use dict() instead of pairlist_to_dict"</tt><tt class="py-op">)</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt>  <tt class="py-line">    <tt class="py-keyword">return</tt> <tt class="py-name">dict</tt><tt class="py-op">(</tt><tt class="py-name">pairs</tt><tt class="py-op">)</tt> </tt>
</div><a name="L254"></a><tt class="py-lineno">254</tt>  <tt class="py-line"> </tt>
<a name="get_interpro_entry"></a><div id="get_interpro_entry-def"><a name="L255"></a><tt class="py-lineno">255</tt> <a class="py-toggle" href="#" id="get_interpro_entry-toggle" onclick="return toggle('get_interpro_entry');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.InterPro-module.html#get_interpro_entry">get_interpro_entry</a><tt class="py-op">(</tt> <tt class="py-param">id</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="get_interpro_entry-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="get_interpro_entry-expanded"><a name="L256"></a><tt class="py-lineno">256</tt>  <tt class="py-line">    <tt class="py-docstring">"""get specified interpro entry"""</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt class="py-name">urllib</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt>  <tt class="py-line">    <tt id="link-111" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-111', 'handle', 'link-33');">handle</a></tt> <tt class="py-op">=</tt> <tt class="py-name">urllib</tt><tt class="py-op">.</tt><tt class="py-name">urlopen</tt><tt class="py-op">(</tt><tt class="py-string">"http://www.ebi.ac.uk/interpro/IEntry?ac="</tt> <tt class="py-op">+</tt> <tt id="link-112" class="py-name" targets="Variable Bio.Data.CodonTable.id=Bio.Data.CodonTable-module.html#id,Variable Bio.Encodings.IUPACEncoding.id=Bio.Encodings.IUPACEncoding-module.html#id,Method Bio.GFF.Feature.id()=Bio.GFF.Feature-class.html#id"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-112', 'id', 'link-112');">id</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt>  <tt class="py-line"> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt>  <tt class="py-line">    <tt class="py-comment"># XXX need to check to see if the entry exists!</tt> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt>  <tt class="py-line"><tt class="py-comment"></tt>    <tt class="py-keyword">return</tt> <tt id="link-113" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-113', 'handle', 'link-33');">handle</a></tt> </tt>
</div><a name="L262"></a><tt class="py-lineno">262</tt>  <tt class="py-line"> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt>  <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt><tt class="py-op">:</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt>  <tt class="py-line">    <tt class="py-keyword">import</tt> <tt id="link-114" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-114', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-115" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-115', 'File', 'link-1');">File</a></tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt>  <tt class="py-line">    <tt id="link-116" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-116', 'handle', 'link-33');">handle</a></tt> <tt class="py-op">=</tt> <tt id="link-117" class="py-name" targets="Function Bio.Mindy.FlatDB.open()=Bio.Mindy.FlatDB-module.html#open,Function Bio.Mindy.open()=Bio.Mindy-module.html#open"><a title="Bio.Mindy.FlatDB.open
Bio.Mindy.open" class="py-name" href="#" onclick="return doclink('link-117', 'open', 'link-117');">open</a></tt><tt class="py-op">(</tt><tt class="py-string">'IPR001064.htm'</tt><tt class="py-op">)</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt>  <tt class="py-line">    <tt id="link-118" class="py-name" targets="Variable Bio.LocusLink.web_parse.undo_handle=Bio.LocusLink.web_parse-module.html#undo_handle,Variable Bio.Ndb.undo_handle=Bio.Ndb-module.html#undo_handle"><a title="Bio.LocusLink.web_parse.undo_handle
Bio.Ndb.undo_handle" class="py-name" href="#" onclick="return doclink('link-118', 'undo_handle', 'link-118');">undo_handle</a></tt> <tt class="py-op">=</tt> <tt id="link-119" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-119', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="Bio.File" class="py-name" href="#" onclick="return doclink('link-120', 'File', 'link-1');">File</a></tt><tt class="py-op">.</tt><tt id="link-121" class="py-name"><a title="Bio.File.UndoHandle" class="py-name" href="#" onclick="return doclink('link-121', 'UndoHandle', 'link-36');">UndoHandle</a></tt><tt class="py-op">(</tt> <tt id="link-122" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-122', 'handle', 'link-33');">handle</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt>  <tt class="py-line">    <tt class="py-name">interpro_parser</tt> <tt class="py-op">=</tt> <tt id="link-123" class="py-name" targets="Class Bio.InterPro.InterProParser=Bio.InterPro.InterProParser-class.html"><a title="Bio.InterPro.InterProParser" class="py-name" href="#" onclick="return doclink('link-123', 'InterProParser', 'link-123');">InterProParser</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt>  <tt class="py-line">    <tt id="link-124" class="py-name" targets="Variable Bio.Emboss.primer3_format.record=Bio.Emboss.primer3_format-module.html#record,Variable Bio.Emboss.primersearch_format.record=Bio.Emboss.primersearch_format-module.html#record,Method Bio.GFF.Feature.record()=Bio.GFF.Feature-class.html#record,Variable Bio.LocusLink.web_parse.record=Bio.LocusLink.web_parse-module.html#record,Variable Bio.Ndb.record=Bio.Ndb-module.html#record,Function Bio.Std.record()=Bio.Std-module.html#record,Variable Bio.expressions.blocks.record=Bio.expressions.blocks-module.html#record,Variable Bio.expressions.embl.embl65.record=Bio.expressions.embl.embl65-module.html#record,Variable Bio.expressions.fasta.record=Bio.expressions.fasta-module.html#record,Variable Bio.expressions.genbank.record=Bio.expressions.genbank-module.html#record,Variable Bio.expressions.hmmpfam.record=Bio.expressions.hmmpfam-module.html#record,Variable Bio.expressions.swissprot.ipi.record=Bio.expressions.swissprot.ipi-module.html#record,Variable Bio.expressions.swissprot.speclist.record=Bio.expressions.swissprot.speclist-module.html#record,Variable Bio.expressions.swissprot.sprot38.record=Bio.expressions.swissprot.sprot38-module.html#record,Variable Bio.expressions.swissprot.sprot40.record=Bio.expressions.swissprot.sprot40-module.html#record,Variable Martel.test.test_swissprot38.record=Martel.test.test_swissprot38-module.html#record,Variable Martel.test.testformats.swissprot38.record=Martel.test.testformats.swissprot38-module.html#record"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-124', 'record', 'link-124');">record</a></tt> <tt class="py-op">=</tt> <tt class="py-name">interpro_parser</tt><tt class="py-op">.</tt><tt id="link-125" class="py-name" targets="Method Bio.Affy.CelFile.CelParser.parse()=Bio.Affy.CelFile.CelParser-class.html#parse,Method Bio.AlignAce.Parser.AlignAceParser.parse()=Bio.AlignAce.Parser.AlignAceParser-class.html#parse,Method Bio.AlignAce.Parser.CompareAceParser.parse()=Bio.AlignAce.Parser.CompareAceParser-class.html#parse,Function Bio.AlignIO.parse()=Bio.AlignIO-module.html#parse,Method Bio.Blast.NCBIStandalone.BlastErrorParser.parse()=Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#parse,Method Bio.Blast.NCBIStandalone.BlastParser.parse()=Bio.Blast.NCBIStandalone.BlastParser-class.html#parse,Method Bio.Blast.NCBIStandalone.PSIBlastParser.parse()=Bio.Blast.NCBIStandalone.PSIBlastParser-class.html#parse,Method Bio.Blast.NCBIWWW.BlastParser.parse()=Bio.Blast.NCBIWWW.BlastParser-class.html#parse,Method Bio.Blast.NCBIXML.BlastParser.parse()=Bio.Blast.NCBIXML.BlastParser-class.html#parse,Function Bio.Blast.NCBIXML.parse()=Bio.Blast.NCBIXML-module.html#parse,Method Bio.CDD.RecordParser.parse()=Bio.CDD.RecordParser-class.html#parse,Method Bio.Compass.RecordParser.parse()=Bio.Compass.RecordParser-class.html#parse,Function Bio.Decode.parse()=Bio.Decode-module.html#parse,Method Bio.ECell.RecordParser.parse()=Bio.ECell.RecordParser-class.html#parse,Method Bio.EUtils.POM.POMDocument.parse()=Bio.EUtils.POM.POMDocument-class.html#parse,Module Bio.EUtils.parse=Bio.EUtils.parse-module.html,Method Bio.Emboss.Primer.Primer3Parser.parse()=Bio.Emboss.Primer.Primer3Parser-class.html#parse,Method Bio.Emboss.Primer.PrimerSearchParser.parse()=Bio.Emboss.Primer.PrimerSearchParser-class.html#parse,Method Bio.Enzyme.RecordParser.parse()=Bio.Enzyme.RecordParser-class.html#parse,Method Bio.Fasta.RecordParser.parse()=Bio.Fasta.RecordParser-class.html#parse,Method Bio.Fasta.SequenceParser.parse()=Bio.Fasta.SequenceParser-class.html#parse,Method Bio.GenBank.FeatureParser.parse()=Bio.GenBank.FeatureParser-class.html#parse,Function Bio.GenBank.LocationParser.parse()=Bio.GenBank.LocationParser-module.html#parse,Method Bio.GenBank.RecordParser.parse()=Bio.GenBank.RecordParser-class.html#parse,Method Bio.GenBank.Scanner.InsdcScanner.parse()=Bio.GenBank.Scanner.InsdcScanner-class.html#parse,Function Bio.Geo.parse()=Bio.Geo-module.html#parse,Method Bio.Gobase.RecordParser.parse()=Bio.Gobase.RecordParser-class.html#parse,Method Bio.IntelliGenetics.RecordParser.parse()=Bio.IntelliGenetics.RecordParser-class.html#parse,Method Bio.InterPro.InterProParser.parse()=Bio.InterPro.InterProParser-class.html#parse,Function Bio.KEGG.Compound.parse()=Bio.KEGG.Compound-module.html#parse,Function Bio.KEGG.Enzyme.parse()=Bio.KEGG.Enzyme-module.html#parse,Function Bio.KEGG.Map.parse()=Bio.KEGG.Map-module.html#parse,Method Bio.LocusLink.RecordParser.parse()=Bio.LocusLink.RecordParser-class.html#parse,Method Bio.LocusLink.web_parse.LocusLinkParser.parse()=Bio.LocusLink.web_parse.LocusLinkParser-class.html#parse,Method Bio.MEME.Parser.MASTParser.parse()=Bio.MEME.Parser.MASTParser-class.html#parse,Method Bio.MEME.Parser.MEMEParser.parse()=Bio.MEME.Parser.MEMEParser-class.html#parse,Method Bio.Medline.RecordParser.parse()=Bio.Medline.RecordParser-class.html#parse,Method Bio.MetaTool.RecordParser.parse()=Bio.MetaTool.RecordParser-class.html#parse,Method Bio.NBRF.RecordParser.parse()=Bio.NBRF.RecordParser-class.html#parse,Method Bio.Ndb.NdbParser.parse()=Bio.Ndb.NdbParser-class.html#parse,Method Bio.ParserSupport.AbstractParser.parse()=Bio.ParserSupport.AbstractParser-class.html#parse,Method Bio.Parsers.spark.GenericParser.parse()=Bio.Parsers.spark.GenericParser-class.html#parse,Method Bio.PopGen.FDist.RecordParser.parse()=Bio.PopGen.FDist.RecordParser-class.html#parse,Method Bio.PopGen.GenePop.RecordParser.parse()=Bio.PopGen.GenePop.RecordParser-class.html#parse,Function Bio.PopGen.GenePop.parse()=Bio.PopGen.GenePop-module.html#parse,Method Bio.Prosite.Prodoc.RecordParser.parse()=Bio.Prosite.Prodoc.RecordParser-class.html#parse,Function Bio.Prosite.Prodoc.parse()=Bio.Prosite.Prodoc-module.html#parse,Method Bio.Prosite.RecordParser.parse()=Bio.Prosite.RecordParser-class.html#parse,Function Bio.Prosite.parse()=Bio.Prosite-module.html#parse,Method Bio.Rebase.RecordParser.parse()=Bio.Rebase.RecordParser-class.html#parse,Method Bio.SCOP.Cla.Parser.parse()=Bio.SCOP.Cla.Parser-class.html#parse,Function Bio.SCOP.Cla.parse()=Bio.SCOP.Cla-module.html#parse,Method Bio.SCOP.Des.Parser.parse()=Bio.SCOP.Des.Parser-class.html#parse,Function Bio.SCOP.Des.parse()=Bio.SCOP.Des-module.html#parse,Method Bio.SCOP.Dom.Parser.parse()=Bio.SCOP.Dom.Parser-class.html#parse,Function Bio.SCOP.Dom.parse()=Bio.SCOP.Dom-module.html#parse,Method Bio.SCOP.Hie.Parser.parse()=Bio.SCOP.Hie.Parser-class.html#parse,Function Bio.SCOP.Hie.parse()=Bio.SCOP.Hie-module.html#parse,Method Bio.SCOP.Raf.Parser.parse()=Bio.SCOP.Raf.Parser-class.html#parse,Function Bio.SCOP.Raf.parse()=Bio.SCOP.Raf-module.html#parse,Method Bio.Saf.RecordParser.parse()=Bio.Saf.RecordParser-class.html#parse,Function Bio.SeqIO.parse()=Bio.SeqIO-module.html#parse,Method Bio.Sequencing.Ace.ACEParser.parse()=Bio.Sequencing.Ace.ACEParser-class.html#parse,Method Bio.Sequencing.Ace.RecordParser.parse()=Bio.Sequencing.Ace.RecordParser-class.html#parse,Method Bio.Sequencing.Phd.RecordParser.parse()=Bio.Sequencing.Phd.RecordParser-class.html#parse,Method Bio.SwissProt.KeyWList.ListParser.parse()=Bio.SwissProt.KeyWList.ListParser-class.html#parse,Function Bio.SwissProt.KeyWList.parse()=Bio.SwissProt.KeyWList-module.html#parse,Method Bio.SwissProt.SProt.RecordParser.parse()=Bio.SwissProt.SProt.RecordParser-class.html#parse,Method Bio.SwissProt.SProt.SequenceParser.parse()=Bio.SwissProt.SProt.SequenceParser-class.html#parse,Function Bio.SwissProt.parse()=Bio.SwissProt-module.html#parse,Method Bio.UniGene.RecordParser.parse()=Bio.UniGene.RecordParser-class.html#parse,Function Bio.Wise.psw.parse()=Bio.Wise.psw-module.html#parse,Method Martel.Parser.HeaderFooterParser.parse()=Martel.Parser.HeaderFooterParser-class.html#parse,Method Martel.Parser.Parser.parse()=Martel.Parser.Parser-class.html#parse,Method Martel.Parser.RecordParser.parse()=Martel.Parser.RecordParser-class.html#parse,Function Martel.msre_parse.parse()=Martel.msre_parse-module.html#parse"><a title="Bio.Affy.CelFile.CelParser.parse
Bio.AlignAce.Parser.AlignAceParser.parse
Bio.AlignAce.Parser.CompareAceParser.parse
Bio.AlignIO.parse
Bio.Blast.NCBIStandalone.BlastErrorParser.parse
Bio.Blast.NCBIStandalone.BlastParser.parse
Bio.Blast.NCBIStandalone.PSIBlastParser.parse
Bio.Blast.NCBIWWW.BlastParser.parse
Bio.Blast.NCBIXML.BlastParser.parse
Bio.Blast.NCBIXML.parse
Bio.CDD.RecordParser.parse
Bio.Compass.RecordParser.parse
Bio.Decode.parse
Bio.ECell.RecordParser.parse
Bio.EUtils.POM.POMDocument.parse
Bio.EUtils.parse
Bio.Emboss.Primer.Primer3Parser.parse
Bio.Emboss.Primer.PrimerSearchParser.parse
Bio.Enzyme.RecordParser.parse
Bio.Fasta.RecordParser.parse
Bio.Fasta.SequenceParser.parse
Bio.GenBank.FeatureParser.parse
Bio.GenBank.LocationParser.parse
Bio.GenBank.RecordParser.parse
Bio.GenBank.Scanner.InsdcScanner.parse
Bio.Geo.parse
Bio.Gobase.RecordParser.parse
Bio.IntelliGenetics.RecordParser.parse
Bio.InterPro.InterProParser.parse
Bio.KEGG.Compound.parse
Bio.KEGG.Enzyme.parse
Bio.KEGG.Map.parse
Bio.LocusLink.RecordParser.parse
Bio.LocusLink.web_parse.LocusLinkParser.parse
Bio.MEME.Parser.MASTParser.parse
Bio.MEME.Parser.MEMEParser.parse
Bio.Medline.RecordParser.parse
Bio.MetaTool.RecordParser.parse
Bio.NBRF.RecordParser.parse
Bio.Ndb.NdbParser.parse
Bio.ParserSupport.AbstractParser.parse
Bio.Parsers.spark.GenericParser.parse
Bio.PopGen.FDist.RecordParser.parse
Bio.PopGen.GenePop.RecordParser.parse
Bio.PopGen.GenePop.parse
Bio.Prosite.Prodoc.RecordParser.parse
Bio.Prosite.Prodoc.parse
Bio.Prosite.RecordParser.parse
Bio.Prosite.parse
Bio.Rebase.RecordParser.parse
Bio.SCOP.Cla.Parser.parse
Bio.SCOP.Cla.parse
Bio.SCOP.Des.Parser.parse
Bio.SCOP.Des.parse
Bio.SCOP.Dom.Parser.parse
Bio.SCOP.Dom.parse
Bio.SCOP.Hie.Parser.parse
Bio.SCOP.Hie.parse
Bio.SCOP.Raf.Parser.parse
Bio.SCOP.Raf.parse
Bio.Saf.RecordParser.parse
Bio.SeqIO.parse
Bio.Sequencing.Ace.ACEParser.parse
Bio.Sequencing.Ace.RecordParser.parse
Bio.Sequencing.Phd.RecordParser.parse
Bio.SwissProt.KeyWList.ListParser.parse
Bio.SwissProt.KeyWList.parse
Bio.SwissProt.SProt.RecordParser.parse
Bio.SwissProt.SProt.SequenceParser.parse
Bio.SwissProt.parse
Bio.UniGene.RecordParser.parse
Bio.Wise.psw.parse
Martel.Parser.HeaderFooterParser.parse
Martel.Parser.Parser.parse
Martel.Parser.RecordParser.parse
Martel.msre_parse.parse" class="py-name" href="#" onclick="return doclink('link-125', 'parse', 'link-125');">parse</a></tt><tt class="py-op">(</tt> <tt id="link-126" class="py-name"><a title="Bio.LocusLink.web_parse.handle
Bio.Ndb.handle" class="py-name" href="#" onclick="return doclink('link-126', 'handle', 'link-33');">handle</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt>  <tt class="py-line">    <tt class="py-keyword">print</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt> <tt id="link-127" class="py-name"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-127', 'record', 'link-124');">record</a></tt> <tt class="py-op">)</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt>  <tt class="py-line"> </tt><script type="text/javascript">
<!--
expandto(location.href);
// -->
</script>
</pre>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

      <th class="navbar" width="100%"></th>
  </tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
  <tr>
    <td align="left" class="footer">
    Generated by Epydoc 3.0.1 on Mon Sep 15 09:27:03 2008
    </td>
    <td align="right" class="footer">
      <a target="mainFrame" href="http://epydoc.sourceforge.net"
        >http://epydoc.sourceforge.net</a>
    </td>
  </tr>
</table>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>