<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.IntelliGenetics.intelligenetics_format</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.IntelliGenetics-module.html">Package IntelliGenetics</a> :: Module intelligenetics_format </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.IntelliGenetics.intelligenetics_format-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module intelligenetics_format</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.IntelliGenetics.intelligenetics_format-pysrc.html">source code</a></span></p> <p>Martel regular expression for Intelligenetic format.</p> <p>http://hiv-web.lanl.gov/ALIGN_97/HIV12SIV-index.html</p> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#comment_line" class="summary-name">comment_line</a> = <code title="Martel.Group("comment_line", Martel.Str(';')+ Martel.ToEol("comment"))">Martel.Group("comment_line", Martel.Str(';')+ M<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#comment_lines" class="summary-name">comment_lines</a> = <code title="Martel.Group("comment_lines", Martel.Rep(comment_line))">Martel.Group("comment_lines", Martel.Rep(comme<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#title_line" class="summary-name">title_line</a> = <code title="Martel.Group("title_line", Martel.Expression.Assert(Martel.Str(';'), 1\ )+ Martel.ToEol())">Martel.Group("title_line", Martel.Expression.Asse<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#residue_line" class="summary-name">residue_line</a> = <code title="Martel.Group("residue_line", Martel.Expression.Assert(Martel.Str(';'),\ 1)+ Martel.ToEol("sequence"))">Martel.Group("residue_line", Martel.Expression.<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#residue_lines" class="summary-name">residue_lines</a> = <code title="Martel.Group("residue_lines", Martel.Rep1(residue_line))">Martel.Group("residue_lines", Martel.Rep1(resi<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="intelligenetics_record"></a><span class="summary-name">intelligenetics_record</span> = <code title="comment_lines+ title_line+ residue_lines">comment_lines+ title_line+ residue_lines</code> </td> </tr> </table> <!-- ==================== VARIABLES DETAILS ==================== --> <a name="section-VariablesDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-VariablesDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="comment_line"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">comment_line</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> Martel.Group("comment_line", Martel.Str(';')+ Martel.ToEol("comment")) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="comment_lines"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">comment_lines</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> Martel.Group("comment_lines", Martel.Rep(comment_line)) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="title_line"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">title_line</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> Martel.Group("title_line", Martel.Expression.Assert(Martel.Str(';'), 1<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> )+ Martel.ToEol()) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="residue_line"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">residue_line</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> Martel.Group("residue_line", Martel.Expression.Assert(Martel.Str(';'),<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> 1)+ Martel.ToEol("sequence")) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <a name="residue_lines"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">residue_lines</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> Martel.Group("residue_lines", Martel.Rep1(residue_line)) </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:24 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // 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