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        <a href="Bio-module.html">Package&nbsp;Bio</a> ::
        <a href="Bio.IntelliGenetics-module.html">Package&nbsp;IntelliGenetics</a> ::
        Module&nbsp;intelligenetics_format
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module intelligenetics_format</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.IntelliGenetics.intelligenetics_format-pysrc.html">source&nbsp;code</a></span></p>
<p>Martel regular expression for Intelligenetic format.</p>
  <p>http://hiv-web.lanl.gov/ALIGN_97/HIV12SIV-index.html</p>

<!-- ==================== VARIABLES ==================== -->
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        <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#comment_line" class="summary-name">comment_line</a> = <code title="Martel.Group(&quot;comment_line&quot;, Martel.Str(';')+ Martel.ToEol(&quot;comment&quot;))">Martel.Group(&quot;comment_line&quot;, Martel.Str(';')+ M<code class="variable-ellipsis">...</code></code>
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      <span class="summary-type">&nbsp;</span>
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        <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#comment_lines" class="summary-name">comment_lines</a> = <code title="Martel.Group(&quot;comment_lines&quot;, Martel.Rep(comment_line))">Martel.Group(&quot;comment_lines&quot;, Martel.Rep(comme<code class="variable-ellipsis">...</code></code>
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      <span class="summary-type">&nbsp;</span>
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        <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#title_line" class="summary-name">title_line</a> = <code title="Martel.Group(&quot;title_line&quot;, Martel.Expression.Assert(Martel.Str(';'), 1\
)+ Martel.ToEol())">Martel.Group(&quot;title_line&quot;, Martel.Expression.Asse<code class="variable-ellipsis">...</code></code>
    </td>
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      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#residue_line" class="summary-name">residue_line</a> = <code title="Martel.Group(&quot;residue_line&quot;, Martel.Expression.Assert(Martel.Str(';'),\
 1)+ Martel.ToEol(&quot;sequence&quot;))">Martel.Group(&quot;residue_line&quot;, Martel.Expression.<code class="variable-ellipsis">...</code></code>
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      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.IntelliGenetics.intelligenetics_format-module.html#residue_lines" class="summary-name">residue_lines</a> = <code title="Martel.Group(&quot;residue_lines&quot;, Martel.Rep1(residue_line))">Martel.Group(&quot;residue_lines&quot;, Martel.Rep1(resi<code class="variable-ellipsis">...</code></code>
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      <span class="summary-type">&nbsp;</span>
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        <a name="intelligenetics_record"></a><span class="summary-name">intelligenetics_record</span> = <code title="comment_lines+ title_line+ residue_lines">comment_lines+ title_line+ residue_lines</code>
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<!-- ==================== VARIABLES DETAILS ==================== -->
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<a name="comment_line"></a>
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  <h3 class="epydoc">comment_line</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;comment_line&quot;, Martel.Str(';')+ Martel.ToEol(&quot;comment&quot;))
</pre></td></tr></table>
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<a name="comment_lines"></a>
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  <h3 class="epydoc">comment_lines</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;comment_lines&quot;, Martel.Rep(comment_line))
</pre></td></tr></table>
</dd>
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<a name="title_line"></a>
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  <h3 class="epydoc">title_line</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;title_line&quot;, Martel.Expression.Assert(Martel.Str(';'), 1<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
)+ Martel.ToEol())
</pre></td></tr></table>
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<a name="residue_line"></a>
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  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;residue_line&quot;, Martel.Expression.Assert(Martel.Str(';'),<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
 1)+ Martel.ToEol(&quot;sequence&quot;))
</pre></td></tr></table>
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<a name="residue_lines"></a>
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  <h3 class="epydoc">residue_lines</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
Martel.Group(&quot;residue_lines&quot;, Martel.Rep1(residue_line))
</pre></td></tr></table>
</dd>
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