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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.AlignIO-module.html">Package AlignIO</a> ::
<a href="Bio.AlignIO.PhylipIO-module.html">Module PhylipIO</a> ::
Class PhylipWriter
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<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class PhylipWriter</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.AlignIO.PhylipIO-pysrc.html#PhylipWriter">source code</a></span></p>
<pre class="base-tree">
<a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html">Interfaces.AlignmentWriter</a> --+
|
<a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">Interfaces.SequentialAlignmentWriter</a> --+
|
<strong class="uidshort">PhylipWriter</strong>
</pre>
<hr />
<p>Phylip alignment writer.</p>
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<td><span class="summary-sig"><a href="Bio.AlignIO.PhylipIO.PhylipWriter-class.html#write_alignment" class="summary-sig-name">write_alignment</a>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">alignment</span>)</span><br />
Use this to write (another) single alignment to an open file.</td>
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<span class="codelink"><a href="Bio.AlignIO.PhylipIO-pysrc.html#PhylipWriter.write_alignment">source code</a></span>
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<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">Interfaces.SequentialAlignmentWriter</a></code></b>:
<code><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__">__init__</a></code>,
<code><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file">write_file</a></code>,
<code><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer">write_footer</a></code>,
<code><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header">write_header</a></code>
</p>
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html">Interfaces.AlignmentWriter</a></code></b>:
<code><a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean">clean</a></code>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">write_alignment</span>(<span class="sig-arg">self</span>,
<span class="sig-arg">alignment</span>)</span>
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</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.AlignIO.PhylipIO-pysrc.html#PhylipWriter.write_alignment">source code</a></span>
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<p>Use this to write (another) single alignment to an open file.</p>
<p>This code will write interlaced alignments (when the sequences are
longer than 50 characters).</p>
<p>Note that record identifiers are strictly truncated at 10
characters.</p>
<p>For more information on the file format, please see:
http://evolution.genetics.washington.edu/phylip/doc/sequence.html
http://evolution.genetics.washington.edu/phylip/doc/main.html#inputfiles</p>
<dl class="fields">
<dt>Overrides:
<a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_alignment">Interfaces.SequentialAlignmentWriter.write_alignment</a>
</dt>
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