<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.GenBank._RecordConsumer</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> Bio :: GenBank :: _RecordConsumer :: Class _RecordConsumer </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.GenBank._RecordConsumer-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class _RecordConsumer</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer">source code</a></span></p> <pre class="base-tree"> <a href="Bio.ParserSupport.AbstractConsumer-class.html">ParserSupport.AbstractConsumer</a> --+ | <a href="Bio.GenBank._BaseGenBankConsumer-class.html">_BaseGenBankConsumer</a> --+ | <strong class="uidshort">_RecordConsumer</strong> </pre> <hr /> <p>Create a GenBank Record object from scanner generated information.</p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.GenBank._RecordConsumer-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="locus"></a><span class="summary-sig-name">locus</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.locus">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="size"></a><span class="summary-sig-name">size</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.size">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="residue_type"></a><span class="summary-sig-name">residue_type</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.residue_type">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="data_file_division"></a><span class="summary-sig-name">data_file_division</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.data_file_division">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="date"></a><span class="summary-sig-name">date</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.date">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="definition"></a><span class="summary-sig-name">definition</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.definition">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="accession"></a><span class="summary-sig-name">accession</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.accession">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="nid"></a><span class="summary-sig-name">nid</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.nid">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="pid"></a><span class="summary-sig-name">pid</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.pid">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="version"></a><span class="summary-sig-name">version</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.version">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="db_source"></a><span class="summary-sig-name">db_source</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.db_source">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="gi"></a><span class="summary-sig-name">gi</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.gi">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="keywords"></a><span class="summary-sig-name">keywords</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.keywords">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="segment"></a><span class="summary-sig-name">segment</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.segment">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="source"></a><span class="summary-sig-name">source</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.source">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="organism"></a><span class="summary-sig-name">organism</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.organism">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="taxonomy"></a><span class="summary-sig-name">taxonomy</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.taxonomy">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="reference_num"></a><span class="summary-sig-name">reference_num</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Grab the reference number and signal the start of a new reference.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.reference_num">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="reference_bases"></a><span class="summary-sig-name">reference_bases</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.reference_bases">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="authors"></a><span class="summary-sig-name">authors</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.authors">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="consrtm"></a><span class="summary-sig-name">consrtm</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.consrtm">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="title"></a><span class="summary-sig-name">title</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.title">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="journal"></a><span class="summary-sig-name">journal</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.journal">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="medline_id"></a><span class="summary-sig-name">medline_id</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.medline_id">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="pubmed_id"></a><span class="summary-sig-name">pubmed_id</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.pubmed_id">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="remark"></a><span class="summary-sig-name">remark</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.remark">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="comment"></a><span class="summary-sig-name">comment</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.comment">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="primary_ref_line"></a><span class="summary-sig-name">primary_ref_line</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Data for the PRIMARY line</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.primary_ref_line">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="primary"></a><span class="summary-sig-name">primary</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.primary">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="features_line"></a><span class="summary-sig-name">features_line</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Get ready for the feature table when we reach the FEATURE line.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.features_line">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="start_feature_table"></a><span class="summary-sig-name">start_feature_table</span>(<span class="summary-sig-arg">self</span>)</span><br /> Signal the start of the feature table.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.start_feature_table">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="feature_key"></a><span class="summary-sig-name">feature_key</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Grab the key of the feature and signal the start of a new feature.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.feature_key">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.GenBank._RecordConsumer-class.html#_add_feature" class="summary-sig-name" onclick="show_private();">_add_feature</a>(<span class="summary-sig-arg">self</span>)</span><br /> Utility function to add a feature to the Record.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer._add_feature">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="location"></a><span class="summary-sig-name">location</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.location">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.GenBank._RecordConsumer-class.html#feature_qualifier_name" class="summary-sig-name">feature_qualifier_name</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content_list</span>)</span><br /> Deal with qualifier names</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.feature_qualifier_name">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="feature_qualifier_description"></a><span class="summary-sig-name">feature_qualifier_description</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.feature_qualifier_description">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="base_count"></a><span class="summary-sig-name">base_count</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.base_count">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="origin_name"></a><span class="summary-sig-name">origin_name</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.origin_name">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="contig_location"></a><span class="summary-sig-name">contig_location</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Signal that we have contig information to add to the record.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.contig_location">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.GenBank._RecordConsumer-class.html#sequence" class="summary-sig-name">sequence</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Add sequence information to a list of sequence strings.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.sequence">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="record_end"></a><span class="summary-sig-name">record_end</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">content</span>)</span><br /> Signal the end of the record and do any necessary clean-up.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.record_end">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html">_BaseGenBankConsumer</a></code></b> (private): <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_clean_location" onclick="show_private();">_clean_location</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_convert_to_python_numbers" onclick="show_private();">_convert_to_python_numbers</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_normalize_spaces" onclick="show_private();">_normalize_spaces</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_remove_newlines" onclick="show_private();">_remove_newlines</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_remove_spaces" onclick="show_private();">_remove_spaces</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_split_accessions" onclick="show_private();">_split_accessions</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_split_keywords" onclick="show_private();">_split_keywords</a></code>, <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#_split_taxonomy" onclick="show_private();">_split_taxonomy</a></code> </p></div> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.ParserSupport.AbstractConsumer-class.html">ParserSupport.AbstractConsumer</a></code></b>: <code><a href="Bio.ParserSupport.AbstractConsumer-class.html#__getattr__">__getattr__</a></code> </p> <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.ParserSupport.AbstractConsumer-class.html">ParserSupport.AbstractConsumer</a></code></b> (private): <code><a href="Bio.ParserSupport.AbstractConsumer-class.html#_unhandled" onclick="show_private();">_unhandled</a></code>, <code><a href="Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section" onclick="show_private();">_unhandled_section</a></code> </p></div> </td> </tr> </table> <!-- ==================== CLASS VARIABLES ==================== --> <a name="section-ClassVariables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Class Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-ClassVariables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html">_BaseGenBankConsumer</a></code></b>: <code><a href="Bio.GenBank._BaseGenBankConsumer-class.html#remove_space_keys">remove_space_keys</a></code> </p> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="__init__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>)</span> <br /><em class="fname">(Constructor)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.__init__">source code</a></span> </td> </tr></table> <dl class="fields"> <dt>Overrides: <a href="Bio.GenBank._BaseGenBankConsumer-class.html#__init__">_BaseGenBankConsumer.__init__</a> </dt> </dl> </td></tr></table> </div> <a name="_add_feature"></a> <div class="private"> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">_add_feature</span>(<span class="sig-arg">self</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer._add_feature">source code</a></span> </td> </tr></table> <p>Utility function to add a feature to the Record.</p> <p>This does all of the appropriate checking to make sure we haven't left any info behind, and that we are only adding info if it exists.</p> <dl class="fields"> </dl> </td></tr></table> </div> <a name="feature_qualifier_name"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">feature_qualifier_name</span>(<span class="sig-arg">self</span>, <span class="sig-arg">content_list</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.feature_qualifier_name">source code</a></span> </td> </tr></table> <p>Deal with qualifier names</p> <p>We receive a list of keys, since you can have valueless keys such as /pseudo which would be passed in with the next key (since no other tags separate them in the file)</p> <dl class="fields"> </dl> </td></tr></table> </div> <a name="sequence"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">sequence</span>(<span class="sig-arg">self</span>, <span class="sig-arg">content</span>)</span> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.GenBank-pysrc.html#_RecordConsumer.sequence">source code</a></span> </td> </tr></table> <p>Add sequence information to a list of sequence strings.</p> <p>This removes spaces in the data and uppercases the sequence, and then adds it to a list of sequences. Later on we'll join this list together to make the final sequence. This is faster than adding on the new string every time.</p> <dl class="fields"> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:35 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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