<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Bio.GenBank.Record</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<span class="breadcrumbs">
<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.GenBank-module.html">Package GenBank</a> ::
Module Record
</span>
</td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="Bio.GenBank.Record-module.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module Record</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.GenBank.Record-pysrc.html">source code</a></span></p>
<p>Hold GenBank data in a straightforward format.</p>
<p>classes: o Record - All of the information in a GenBank record. o
Reference - hold reference data for a record. o Feature - Hold the
information in a Feature Table. o Qualifier - Qualifiers on a
Feature.</p>
<!-- ==================== CLASSES ==================== -->
<a name="section-Classes"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Classes</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-Classes"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.GenBank.Record.Record-class.html" class="summary-name">Record</a><br />
Hold GenBank information in a format similar to the original
record.
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.GenBank.Record.Reference-class.html" class="summary-name">Reference</a><br />
Hold information from a GenBank reference.
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.GenBank.Record.Feature-class.html" class="summary-name">Feature</a><br />
Hold information about a Feature in the Feature Table of GenBank
record.
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.GenBank.Record.Qualifier-class.html" class="summary-name">Qualifier</a><br />
Hold information about a qualifier in a GenBank feature.
</td>
</tr>
</table>
<!-- ==================== FUNCTIONS ==================== -->
<a name="section-Functions"></a>
<table class="summary" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Functions</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-Functions"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a href="Bio.GenBank.Record-module.html#_wrapped_genbank" class="summary-sig-name" onclick="show_private();">_wrapped_genbank</a>(<span class="summary-sig-arg">information</span>,
<span class="summary-sig-arg">indent</span>,
<span class="summary-sig-arg">wrap_space</span>=<span class="summary-sig-default">1</span>,
<span class="summary-sig-arg">split_char</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string"> </code><code class="variable-quote">'</code></span>)</span><br />
Write a line of GenBank info that can wrap over multiple lines.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.GenBank.Record-pysrc.html#_wrapped_genbank">source code</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr class="private">
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type"> </span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a href="Bio.GenBank.Record-module.html#_indent_genbank" class="summary-sig-name" onclick="show_private();">_indent_genbank</a>(<span class="summary-sig-arg">information</span>,
<span class="summary-sig-arg">indent</span>)</span><br />
Write out information with the specified indent.</td>
<td align="right" valign="top">
<span class="codelink"><a href="Bio.GenBank.Record-pysrc.html#_indent_genbank">source code</a></span>
</td>
</tr>
</table>
</td>
</tr>
</table>
<!-- ==================== FUNCTION DETAILS ==================== -->
<a name="section-FunctionDetails"></a>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
<td colspan="2" class="table-header">
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr valign="top">
<td align="left"><span class="table-header">Function Details</span></td>
<td align="right" valign="top"
><span class="options">[<a href="#section-FunctionDetails"
class="privatelink" onclick="toggle_private();"
>hide private</a>]</span></td>
</tr>
</table>
</td>
</tr>
</table>
<a name="_wrapped_genbank"></a>
<div class="private">
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">_wrapped_genbank</span>(<span class="sig-arg">information</span>,
<span class="sig-arg">indent</span>,
<span class="sig-arg">wrap_space</span>=<span class="sig-default">1</span>,
<span class="sig-arg">split_char</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string"> </code><code class="variable-quote">'</code></span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.GenBank.Record-pysrc.html#_wrapped_genbank">source code</a></span>
</td>
</tr></table>
<p>Write a line of GenBank info that can wrap over multiple lines.</p>
<p>This takes a line of information which can potentially wrap over
multiple lines, and breaks it up with carriage returns and indentation so
it fits properly into a GenBank record.</p>
<p>Arguments:</p>
<p>o information - The string holding the information we want wrapped in
GenBank method.</p>
<p>o indent - The indentation on the lines we are writing.</p>
<p>o wrap_space - Whether or not to wrap only on spaces in the
information.</p>
<p>o split_char - A specific character to split the lines on. By default
spaces are used.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<a name="_indent_genbank"></a>
<div class="private">
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr valign="top"><td>
<h3 class="epydoc"><span class="sig"><span class="sig-name">_indent_genbank</span>(<span class="sig-arg">information</span>,
<span class="sig-arg">indent</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Bio.GenBank.Record-pysrc.html#_indent_genbank">source code</a></span>
</td>
</tr></table>
<p>Write out information with the specified indent.</p>
<p>Unlike _wrapped_genbank, this function makes no attempt to wrap lines
-- it assumes that the information already has newlines in the
appropriate places, and will add the specified indent to the start of
each line.</p>
<dl class="fields">
</dl>
</td></tr></table>
</div>
<br />
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th> <a
href="identifier-index.html">Indices</a> </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:23 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
