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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.AlignIO-module.html">Package AlignIO</a> ::
Module FastaIO
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<h1 class="epydoc">Module FastaIO</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.AlignIO.FastaIO-pysrc.html">source code</a></span></p>
<p>This module contains a parser for the pairwise alignments produced by
Bill Pearson's FASTA tool, for use from the Bio.AlignIO interface where
it is refered to as the "fasta-m10" file format (as we only
support the machine readable output format selected with the -m 10
command line option).</p>
<p>This module does NOT cover the generic "fasta" file format
originally developed as an input format to the FASTA tools. The
Bio.AlignIO and Bio.SeqIO both use the Bio.SeqIO.FastaIO module to deal
with these files, which can also be used to store a multiple sequence
alignments.</p>
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<a href="Bio.AlignIO.FastaIO.FastaM10Iterator-class.html" class="summary-name">FastaM10Iterator</a><br />
Alignment iterator for the FASTA tool's pairwise alignment output.
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