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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.FSSP-module.html">Package FSSP</a> ::
Module fssp_rec
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<h1 class="epydoc">Source Code for <a href="Bio.FSSP.fssp_rec-module.html">Module Bio.FSSP.fssp_rec</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">types</tt> <tt class="py-keyword">import</tt> <tt class="py-name">ListType</tt><tt class="py-op">,</tt> <tt class="py-name">TupleType</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"># A superclass for reading [f]ixed-column type [f]lat-[f]ile records. (e.g.</tt> </tt>
<a name="fff_rec"></a><div id="fff_rec-def"><a name="L3"></a><tt class="py-lineno"> 3</tt> <a class="py-toggle" href="#" id="fff_rec-toggle" onclick="return toggle('fff_rec');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.fff_rec-class.html">fff_rec</a><tt class="py-op">:</tt> </tt>
</div><div id="fff_rec-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="fff_rec-expanded"><a name="fff_rec.__init__"></a><div id="fff_rec.__init__-def"><a name="L4"></a><tt class="py-lineno"> 4</tt> <a class="py-toggle" href="#" id="fff_rec.__init__-toggle" onclick="return toggle('fff_rec.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.fff_rec-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">inrec</tt><tt class="py-op">=</tt><tt class="py-string">''</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="fff_rec.__init__-collapsed" style="display:none;" pad="++" indent="+++++++"></div><div id="fff_rec.__init__-expanded"><a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-0" class="py-name" targets="Variable BioSQL.BioSeq.DBSeq.data=BioSQL.BioSeq.DBSeq-class.html#data"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-0', 'data', 'link-0');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">inrec</tt> </tt>
</div><a name="fff_rec.__repr__"></a><div id="fff_rec.__repr__-def"><a name="L6"></a><tt class="py-lineno"> 6</tt> <a class="py-toggle" href="#" id="fff_rec.__repr__-toggle" onclick="return toggle('fff_rec.__repr__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.fff_rec-class.html#__repr__">__repr__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="fff_rec.__repr__-collapsed" style="display:none;" pad="++" indent="+++++++"></div><div id="fff_rec.__repr__-expanded"><a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">str</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-1" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-1', 'data', 'link-0');">data</a></tt><tt class="py-op">)</tt> </tt>
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Martel.Expression.PassThrough.__str__
Martel.Expression.Seq.__str__
Martel.Expression.Str.__str__
Martel.Parser.HeaderFooterParser.__str__
Martel.Parser.MartelAttributeList.__str__
Martel.Parser.Parser.__str__
Martel.Parser.RecordParser.__str__" class="py-name" href="#" onclick="return doclink('link-2', '__str__', 'link-2');">__str__</a></tt> <tt class="py-op">=</tt> <tt id="link-3" class="py-name" targets="Method Bio.Align.Generic.Alignment.__repr__()=Bio.Align.Generic.Alignment-class.html#__repr__,Method Bio.Alphabet.Alphabet.__repr__()=Bio.Alphabet.Alphabet-class.html#__repr__,Method Bio.Alphabet.AlphabetEncoder.__repr__()=Bio.Alphabet.AlphabetEncoder-class.html#__repr__,Method Bio.Crystal.Crystal.__repr__()=Bio.Crystal.Crystal-class.html#__repr__,Method Bio.Crystal.Hetero.__repr__()=Bio.Crystal.Hetero-class.html#__repr__,Method Bio.Decode.Token.__repr__()=Bio.Decode.Token-class.html#__repr__,Method Bio.Decode.ValueToken.__repr__()=Bio.Decode.ValueToken-class.html#__repr__,Method Bio.DocSQL.Query.__repr__()=Bio.DocSQL.Query-class.html#__repr__,Method Bio.EUtils.Datatypes.CheckLinkSet.__repr__()=Bio.EUtils.Datatypes.CheckLinkSet-class.html#__repr__,Method 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Bio.EUtils.POM._AttributeType.__repr__()=Bio.EUtils.POM._AttributeType-class.html#__repr__,Method Bio.EUtils.POM._ContentModelGenerator.__repr__()=Bio.EUtils.POM._ContentModelGenerator-class.html#__repr__,Method Bio.Enzyme.EnzymeRecord.__repr__()=Bio.Enzyme.EnzymeRecord-class.html#__repr__,Method Bio.FSSP.FSSPSumRec.__repr__()=Bio.FSSP.FSSPSumRec-class.html#__repr__,Method Bio.FSSP.PosAlign.__repr__()=Bio.FSSP.PosAlign-class.html#__repr__,Method Bio.FSSP.fssp_rec.fff_rec.__repr__()=Bio.FSSP.fssp_rec.fff_rec-class.html#__repr__,Method Bio.GFF.easy.Location.__repr__()=Bio.GFF.easy.Location-class.html#__repr__,Method Bio.GenBank.LocationParser.AbsoluteLocation.__repr__()=Bio.GenBank.LocationParser.AbsoluteLocation-class.html#__repr__,Method Bio.GenBank.LocationParser.Between.__repr__()=Bio.GenBank.LocationParser.Between-class.html#__repr__,Method Bio.GenBank.LocationParser.FeatureName.__repr__()=Bio.GenBank.LocationParser.FeatureName-class.html#__repr__,Method Bio.GenBank.LocationParser.Function.__repr__()=Bio.GenBank.LocationParser.Function-class.html#__repr__,Method Bio.GenBank.LocationParser.HighBound.__repr__()=Bio.GenBank.LocationParser.HighBound-class.html#__repr__,Method Bio.GenBank.LocationParser.Integer.__repr__()=Bio.GenBank.LocationParser.Integer-class.html#__repr__,Method Bio.GenBank.LocationParser.LowBound.__repr__()=Bio.GenBank.LocationParser.LowBound-class.html#__repr__,Method Bio.GenBank.LocationParser.Path.__repr__()=Bio.GenBank.LocationParser.Path-class.html#__repr__,Method Bio.GenBank.LocationParser.Range.__repr__()=Bio.GenBank.LocationParser.Range-class.html#__repr__,Method Bio.GenBank.LocationParser.Symbol.__repr__()=Bio.GenBank.LocationParser.Symbol-class.html#__repr__,Method Bio.GenBank.LocationParser.Token.__repr__()=Bio.GenBank.LocationParser.Token-class.html#__repr__,Method Bio.GenBank.LocationParser.TwoBound.__repr__()=Bio.GenBank.LocationParser.TwoBound-class.html#__repr__,Method Bio.GenBank.LocationParser.UnsignedInteger.__repr__()=Bio.GenBank.LocationParser.UnsignedInteger-class.html#__repr__,Method Bio.KDTree.CKDTree.KDTree.__repr__()=Bio.KDTree.CKDTree.KDTree-class.html#__repr__,Method Bio.Mindy.Location.Location.__repr__()=Bio.Mindy.Location.Location-class.html#__repr__,Method Bio.PDB.Atom.Atom.__repr__()=Bio.PDB.Atom.Atom-class.html#__repr__,Method Bio.PDB.Atom.DisorderedAtom.__repr__()=Bio.PDB.Atom.DisorderedAtom-class.html#__repr__,Method Bio.PDB.Chain.Chain.__repr__()=Bio.PDB.Chain.Chain-class.html#__repr__,Method Bio.PDB.FragmentMapper'.Fragment.__repr__()=Bio.PDB.FragmentMapper%27.Fragment-class.html#__repr__,Method Bio.PDB.Model.Model.__repr__()=Bio.PDB.Model.Model-class.html#__repr__,Method Bio.PDB.PDBIO'.Select.__repr__()=Bio.PDB.PDBIO%27.Select-class.html#__repr__,Method Bio.PDB.Polypeptide.Polypeptide.__repr__()=Bio.PDB.Polypeptide.Polypeptide-class.html#__repr__,Method Bio.PDB.Residue.DisorderedResidue.__repr__()=Bio.PDB.Residue.DisorderedResidue-class.html#__repr__,Method Bio.PDB.Residue.Residue.__repr__()=Bio.PDB.Residue.Residue-class.html#__repr__,Method Bio.PDB.Structure.Structure.__repr__()=Bio.PDB.Structure.Structure-class.html#__repr__,Method Bio.PDB.Vector'.Vector.__repr__()=Bio.PDB.Vector%27.Vector-class.html#__repr__,Method Bio.Pathway.Interaction.__repr__()=Bio.Pathway.Interaction-class.html#__repr__,Method Bio.Pathway.Network.__repr__()=Bio.Pathway.Network-class.html#__repr__,Method Bio.Pathway.Reaction.__repr__()=Bio.Pathway.Reaction-class.html#__repr__,Method Bio.Pathway.Rep.Graph.Graph.__repr__()=Bio.Pathway.Rep.Graph.Graph-class.html#__repr__,Method Bio.Pathway.Rep.HashSet.HashSet.__repr__()=Bio.Pathway.Rep.HashSet.HashSet-class.html#__repr__,Method Bio.Pathway.Rep.MultiGraph.MultiGraph.__repr__()=Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__repr__,Method Bio.Pathway.System.__repr__()=Bio.Pathway.System-class.html#__repr__,Method Bio.Prosite.Pattern.Prosite.__repr__()=Bio.Prosite.Pattern.Prosite-class.html#__repr__,Method Bio.Prosite.Pattern.PrositeMatch.__repr__()=Bio.Prosite.Pattern.PrositeMatch-class.html#__repr__,Method Bio.Restriction.Restriction.Analysis.__repr__()=Bio.Restriction.Restriction.Analysis-class.html#__repr__,Method Bio.Restriction.Restriction.FormattedSeq.__repr__()=Bio.Restriction.Restriction.FormattedSeq-class.html#__repr__,Method Bio.Restriction.Restriction.RestrictionBatch.__repr__()=Bio.Restriction.Restriction.RestrictionBatch-class.html#__repr__,Method Bio.Restriction.Restriction.RestrictionType.__repr__()=Bio.Restriction.Restriction.RestrictionType-class.html#__repr__,Method Bio.Seq.MutableSeq.__repr__()=Bio.Seq.MutableSeq-class.html#__repr__,Method Bio.Seq.Seq.__repr__()=Bio.Seq.Seq-class.html#__repr__,Method Bio.SeqRecord.SeqRecord.__repr__()=Bio.SeqRecord.SeqRecord-class.html#__repr__,Method Bio.SwissProt.SProt._RecordConsumer.__repr__()=Bio.SwissProt.SProt._RecordConsumer-class.html#__repr__,Method Bio.UniGene.UnigeneProtsimRecord.__repr__()=Bio.UniGene.UnigeneProtsimRecord-class.html#__repr__,Method Bio.UniGene.UnigeneRecord.__repr__()=Bio.UniGene.UnigeneRecord-class.html#__repr__,Method Bio.UniGene.UnigeneSTSRecord.__repr__()=Bio.UniGene.UnigeneSTSRecord-class.html#__repr__,Method Bio.UniGene.UnigeneSequenceRecord.__repr__()=Bio.UniGene.UnigeneSequenceRecord-class.html#__repr__,Method Bio.Wise.psw.AlignmentColumn.__repr__()=Bio.Wise.psw.AlignmentColumn-class.html#__repr__,Method BioSQL.BioSeqDatabase.BioSeqDatabase.__repr__()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#__repr__,Method BioSQL.BioSeqDatabase.DBServer.__repr__()=BioSQL.BioSeqDatabase.DBServer-class.html#__repr__,Method Martel.Parser.MartelAttributeList.__repr__()=Martel.Parser.MartelAttributeList-class.html#__repr__,Method Martel.msre_parse.SubPattern.__repr__()=Martel.msre_parse.SubPattern-class.html#__repr__"><a title="Bio.Align.Generic.Alignment.__repr__
Bio.Alphabet.Alphabet.__repr__
Bio.Alphabet.AlphabetEncoder.__repr__
Bio.Crystal.Crystal.__repr__
Bio.Crystal.Hetero.__repr__
Bio.Decode.Token.__repr__
Bio.Decode.ValueToken.__repr__
Bio.DocSQL.Query.__repr__
Bio.EUtils.Datatypes.CheckLinkSet.__repr__
Bio.EUtils.Datatypes.DBIds.__repr__
Bio.EUtils.Datatypes.Date.__repr__
Bio.EUtils.Datatypes.EUtilsSearchError.__repr__
Bio.EUtils.Datatypes.IdCheck.__repr__
Bio.EUtils.Datatypes.IdUrlSet.__repr__
Bio.EUtils.Datatypes.Link.__repr__
Bio.EUtils.Datatypes.LinkSetDb.__repr__
Bio.EUtils.Datatypes.LinksLinkSet.__repr__
Bio.EUtils.Datatypes.NeighborLinkSet.__repr__
Bio.EUtils.Datatypes.ObjUrl.__repr__
Bio.EUtils.Datatypes.Problem.__repr__
Bio.EUtils.Datatypes.Provider.__repr__
Bio.EUtils.Datatypes.Summary.__repr__
Bio.EUtils.MultiDict.OrderedMultiDict.__repr__
Bio.EUtils.MultiDict.UnorderedMultiDict.__repr__
Bio.EUtils.POM.AttributeList.__repr__
Bio.EUtils.POM.ContentModel.__repr__
Bio.EUtils.POM.ElementNode.__repr__
Bio.EUtils.POM.IndentedText.__repr__
Bio.EUtils.POM.XMLAttribute.__repr__
Bio.EUtils.POM._AttributeType.__repr__
Bio.EUtils.POM._ContentModelGenerator.__repr__
Bio.Enzyme.EnzymeRecord.__repr__
Bio.FSSP.FSSPSumRec.__repr__
Bio.FSSP.PosAlign.__repr__
Bio.FSSP.fssp_rec.fff_rec.__repr__
Bio.GFF.easy.Location.__repr__
Bio.GenBank.LocationParser.AbsoluteLocation.__repr__
Bio.GenBank.LocationParser.Between.__repr__
Bio.GenBank.LocationParser.FeatureName.__repr__
Bio.GenBank.LocationParser.Function.__repr__
Bio.GenBank.LocationParser.HighBound.__repr__
Bio.GenBank.LocationParser.Integer.__repr__
Bio.GenBank.LocationParser.LowBound.__repr__
Bio.GenBank.LocationParser.Path.__repr__
Bio.GenBank.LocationParser.Range.__repr__
Bio.GenBank.LocationParser.Symbol.__repr__
Bio.GenBank.LocationParser.Token.__repr__
Bio.GenBank.LocationParser.TwoBound.__repr__
Bio.GenBank.LocationParser.UnsignedInteger.__repr__
Bio.KDTree.CKDTree.KDTree.__repr__
Bio.Mindy.Location.Location.__repr__
Bio.PDB.Atom.Atom.__repr__
Bio.PDB.Atom.DisorderedAtom.__repr__
Bio.PDB.Chain.Chain.__repr__
Bio.PDB.FragmentMapper'.Fragment.__repr__
Bio.PDB.Model.Model.__repr__
Bio.PDB.PDBIO'.Select.__repr__
Bio.PDB.Polypeptide.Polypeptide.__repr__
Bio.PDB.Residue.DisorderedResidue.__repr__
Bio.PDB.Residue.Residue.__repr__
Bio.PDB.Structure.Structure.__repr__
Bio.PDB.Vector'.Vector.__repr__
Bio.Pathway.Interaction.__repr__
Bio.Pathway.Network.__repr__
Bio.Pathway.Reaction.__repr__
Bio.Pathway.Rep.Graph.Graph.__repr__
Bio.Pathway.Rep.HashSet.HashSet.__repr__
Bio.Pathway.Rep.MultiGraph.MultiGraph.__repr__
Bio.Pathway.System.__repr__
Bio.Prosite.Pattern.Prosite.__repr__
Bio.Prosite.Pattern.PrositeMatch.__repr__
Bio.Restriction.Restriction.Analysis.__repr__
Bio.Restriction.Restriction.FormattedSeq.__repr__
Bio.Restriction.Restriction.RestrictionBatch.__repr__
Bio.Restriction.Restriction.RestrictionType.__repr__
Bio.Seq.MutableSeq.__repr__
Bio.Seq.Seq.__repr__
Bio.SeqRecord.SeqRecord.__repr__
Bio.SwissProt.SProt._RecordConsumer.__repr__
Bio.UniGene.UnigeneProtsimRecord.__repr__
Bio.UniGene.UnigeneRecord.__repr__
Bio.UniGene.UnigeneSTSRecord.__repr__
Bio.UniGene.UnigeneSequenceRecord.__repr__
Bio.Wise.psw.AlignmentColumn.__repr__
BioSQL.BioSeqDatabase.BioSeqDatabase.__repr__
BioSQL.BioSeqDatabase.DBServer.__repr__
Martel.Parser.MartelAttributeList.__repr__
Martel.msre_parse.SubPattern.__repr__" class="py-name" href="#" onclick="return doclink('link-3', '__repr__', 'link-3');">__repr__</a></tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
<a name="fff_rec.__getslice__"></a><div id="fff_rec.__getslice__-def"><a name="L10"></a><tt class="py-lineno">10</tt> <a class="py-toggle" href="#" id="fff_rec.__getslice__-toggle" onclick="return toggle('fff_rec.__getslice__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.fff_rec-class.html#__getslice__">__getslice__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">low</tt><tt class="py-op">,</tt><tt class="py-param">high</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="fff_rec.__getslice__-collapsed" style="display:none;" pad="++" indent="+++++++"></div><div id="fff_rec.__getslice__-expanded"><a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-4', 'data', 'link-0');">data</a></tt><tt class="py-op">[</tt><tt class="py-name">low</tt><tt class="py-op">:</tt><tt class="py-name">high</tt><tt class="py-op">]</tt> </tt>
</div><a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"> </tt>
<a name="fff_rec.__len__"></a><div id="fff_rec.__len__-def"><a name="L13"></a><tt class="py-lineno">13</tt> <a class="py-toggle" href="#" id="fff_rec.__len__-toggle" onclick="return toggle('fff_rec.__len__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.fff_rec-class.html#__len__">__len__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="fff_rec.__len__-collapsed" style="display:none;" pad="++" indent="+++++++"></div><div id="fff_rec.__len__-expanded"><a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-5', 'data', 'link-0');">data</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="fff_rec.__getitem__"></a><div id="fff_rec.__getitem__-def"><a name="L15"></a><tt class="py-lineno">15</tt> <a class="py-toggle" href="#" id="fff_rec.__getitem__-toggle" onclick="return toggle('fff_rec.__getitem__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.fff_rec-class.html#__getitem__">__getitem__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">index</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="fff_rec.__getitem__-collapsed" style="display:none;" pad="++" indent="+++++++"></div><div id="fff_rec.__getitem__-expanded"><a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt id="link-6" class="py-name" targets="Variable Bio.GenBank.LocationParser.Integer.type=Bio.GenBank.LocationParser.Integer-class.html#type,Variable Bio.GenBank.LocationParser.Symbol.type=Bio.GenBank.LocationParser.Symbol-class.html#type,Variable Bio.GenBank.LocationParser.UnsignedInteger.type=Bio.GenBank.LocationParser.UnsignedInteger-class.html#type"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-6', 'type', 'link-6');">type</a></tt><tt class="py-op">(</tt><tt id="link-7" class="py-name" targets="Method Bio.Crystal.Chain.index()=Bio.Crystal.Chain-class.html#index,Method Bio.EUtils.POM.ElementNode.index()=Bio.EUtils.POM.ElementNode-class.html#index,Method Bio.SCOP.Raf.SeqMap.index()=Bio.SCOP.Raf.SeqMap-class.html#index,Method Bio.Seq.MutableSeq.index()=Bio.Seq.MutableSeq-class.html#index"><a title="Bio.Crystal.Chain.index
Bio.EUtils.POM.ElementNode.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index" class="py-name" href="#" onclick="return doclink('link-7', 'index', 'link-7');">index</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">is</tt> <tt class="py-name">TupleType</tt> <tt class="py-keyword">or</tt> <tt id="link-8" class="py-name"><a title="Bio.GenBank.LocationParser.Integer.type
Bio.GenBank.LocationParser.Symbol.type
Bio.GenBank.LocationParser.UnsignedInteger.type" class="py-name" href="#" onclick="return doclink('link-8', 'type', 'link-6');">type</a></tt><tt class="py-op">(</tt><tt id="link-9" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.EUtils.POM.ElementNode.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index" class="py-name" href="#" onclick="return doclink('link-9', 'index', 'link-7');">index</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">is</tt> <tt class="py-name">ListType</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt id="link-10" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.EUtils.POM.ElementNode.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index" class="py-name" href="#" onclick="return doclink('link-10', 'index', 'link-7');">index</a></tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-11', 'data', 'link-0');">data</a></tt><tt class="py-op">[</tt><tt id="link-12" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.EUtils.POM.ElementNode.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index" class="py-name" href="#" onclick="return doclink('link-12', 'index', 'link-7');">index</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">:</tt><tt id="link-13" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.EUtils.POM.ElementNode.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index" class="py-name" href="#" onclick="return doclink('link-13', 'index', 'link-7');">index</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="BioSQL.BioSeq.DBSeq.data" class="py-name" href="#" onclick="return doclink('link-14', 'data', 'link-0');">data</a></tt><tt class="py-op">[</tt><tt id="link-15" class="py-name"><a title="Bio.Crystal.Chain.index
Bio.EUtils.POM.ElementNode.index
Bio.SCOP.Raf.SeqMap.index
Bio.Seq.MutableSeq.index" class="py-name" href="#" onclick="return doclink('link-15', 'index', 'link-7');">index</a></tt><tt class="py-op">]</tt> </tt>
</div></div><a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"><tt class="py-comment"># Definition of the align section in a FSSP file</tt> </tt>
<a name="align"></a><div id="align-def"><a name="L23"></a><tt class="py-lineno">23</tt> <a class="py-toggle" href="#" id="align-toggle" onclick="return toggle('align');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.FSSP.fssp_rec.align-class.html">align</a><tt class="py-op">:</tt> </tt>
</div><div id="align-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="align-expanded"><a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt id="link-16" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.abs_res_num=Bio.FSSP.fssp_rec.align-class.html#abs_res_num"><a title="Bio.FSSP.fssp_rec.align.abs_res_num" class="py-name" href="#" onclick="return doclink('link-16', 'abs_res_num', 'link-16');">abs_res_num</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">4</tt><tt class="py-op">)</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt id="link-17" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.pdb_res_num=Bio.FSSP.fssp_rec.align-class.html#pdb_res_num"><a title="Bio.FSSP.fssp_rec.align.pdb_res_num" class="py-name" href="#" onclick="return doclink('link-17', 'pdb_res_num', 'link-17');">pdb_res_num</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">,</tt><tt class="py-number">9</tt><tt class="py-op">)</tt> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt id="link-18" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.chain_id=Bio.FSSP.fssp_rec.align-class.html#chain_id"><a title="Bio.FSSP.fssp_rec.align.chain_id" class="py-name" href="#" onclick="return doclink('link-18', 'chain_id', 'link-18');">chain_id</a></tt> <tt class="py-op">=</tt> <tt class="py-number">10</tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt id="link-19" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.res_name=Bio.FSSP.fssp_rec.align-class.html#res_name"><a title="Bio.FSSP.fssp_rec.align.res_name" class="py-name" href="#" onclick="return doclink('link-19', 'res_name', 'link-19');">res_name</a></tt> <tt class="py-op">=</tt> <tt class="py-number">12</tt> </tt>
<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt id="link-20" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.ss1=Bio.FSSP.fssp_rec.align-class.html#ss1"><a title="Bio.FSSP.fssp_rec.align.ss1" class="py-name" href="#" onclick="return doclink('link-20', 'ss1', 'link-20');">ss1</a></tt> <tt class="py-op">=</tt> <tt class="py-number">15</tt> </tt>
<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt id="link-21" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.turn3=Bio.FSSP.fssp_rec.align-class.html#turn3"><a title="Bio.FSSP.fssp_rec.align.turn3" class="py-name" href="#" onclick="return doclink('link-21', 'turn3', 'link-21');">turn3</a></tt> <tt class="py-op">=</tt> <tt class="py-number">17</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> <tt id="link-22" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.turn4=Bio.FSSP.fssp_rec.align-class.html#turn4"><a title="Bio.FSSP.fssp_rec.align.turn4" class="py-name" href="#" onclick="return doclink('link-22', 'turn4', 'link-22');">turn4</a></tt> <tt class="py-op">=</tt> <tt class="py-number">18</tt> </tt>
<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt id="link-23" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.turn5=Bio.FSSP.fssp_rec.align-class.html#turn5"><a title="Bio.FSSP.fssp_rec.align.turn5" class="py-name" href="#" onclick="return doclink('link-23', 'turn5', 'link-23');">turn5</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">,</tt><tt class="py-number">22</tt><tt class="py-op">)</tt> </tt>
<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt id="link-24" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.acc=Bio.FSSP.fssp_rec.align-class.html#acc"><a title="Bio.FSSP.fssp_rec.align.acc" class="py-name" href="#" onclick="return doclink('link-24', 'acc', 'link-24');">acc</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">34</tt><tt class="py-op">,</tt><tt class="py-number">37</tt><tt class="py-op">)</tt> </tt>
<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt id="link-25" class="py-name" targets="Variable Bio.FSSP.fssp_rec.align.start_aa_list=Bio.FSSP.fssp_rec.align-class.html#start_aa_list"><a title="Bio.FSSP.fssp_rec.align.start_aa_list" class="py-name" href="#" onclick="return doclink('link-25', 'start_aa_list', 'link-25');">start_aa_list</a></tt> <tt class="py-op">=</tt> <tt class="py-number">42</tt> </tt>
</div><a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> </tt><script type="text/javascript">
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