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<a href="Bio-module.html">Package Bio</a> ::
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Module IUPACEncoding
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<h1 class="epydoc">Source Code for <a href="Bio.Encodings.IUPACEncoding-module.html">Module Bio.Encodings.IUPACEncoding</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Set up the IUPAC alphabet properties</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Module Bio.PropertyManager=Bio.PropertyManager-module.html,Class Bio.PropertyManager.PropertyManager=Bio.PropertyManager.PropertyManager-class.html"><a title="Bio.PropertyManager
Bio.PropertyManager.PropertyManager" class="py-name" href="#" onclick="return doclink('link-1', 'PropertyManager', 'link-1');">PropertyManager</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Variable Bio.PropertyManager.default_manager=Bio.PropertyManager-module.html#default_manager"><a title="Bio.PropertyManager.default_manager" class="py-name" href="#" onclick="return doclink('link-2', 'default_manager', 'link-2');">default_manager</a></tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-3', 'Bio', 'link-0');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Package Bio.Alphabet=Bio.Alphabet-module.html,Class Bio.Alphabet.Alphabet=Bio.Alphabet.Alphabet-class.html"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-4', 'Alphabet', 'link-4');">Alphabet</a></tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-5" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-5', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-6" class="py-name"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-6', 'Alphabet', 'link-4');">Alphabet</a></tt> <tt class="py-keyword">import</tt> <tt id="link-7" class="py-name" targets="Module Bio.Alphabet.IUPAC=Bio.Alphabet.IUPAC-module.html"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-7', 'IUPAC', 'link-7');">IUPAC</a></tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-8" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-8', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Package Bio.Data=Bio.Data-module.html"><a title="Bio.Data" class="py-name" href="#" onclick="return doclink('link-9', 'Data', 'link-9');">Data</a></tt> <tt class="py-keyword">import</tt> <tt id="link-10" class="py-name" targets="Module Bio.Data.IUPACData=Bio.Data.IUPACData-module.html"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-10', 'IUPACData', 'link-10');">IUPACData</a></tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-11" class="py-name"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-11', 'Bio', 'link-0');">Bio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-12" class="py-name" targets="Module Bio.Transcribe=Bio.Transcribe-module.html,Class Bio.Transcribe.Transcribe=Bio.Transcribe.Transcribe-class.html"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-12', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">,</tt> <tt id="link-13" class="py-name" targets="Module Bio.Translate=Bio.Translate-module.html"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-13', 'Translate', 'link-13');">Translate</a></tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt id="link-14" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.set_prop=Bio.Encodings.IUPACEncoding-module.html#set_prop"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-14', 'set_prop', 'link-14');">set_prop</a></tt> <tt class="py-op">=</tt> <tt id="link-15" class="py-name"><a title="Bio.PropertyManager.default_manager" class="py-name" href="#" onclick="return doclink('link-15', 'default_manager', 'link-2');">default_manager</a></tt><tt class="py-op">.</tt><tt class="py-name">class_property</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-comment"># weight tables</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-16" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-16', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-17" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-17', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-18" class="py-name" targets="Class Bio.Alphabet.IUPAC.IUPACUnambiguousDNA=Bio.Alphabet.IUPAC.IUPACUnambiguousDNA-class.html"><a title="Bio.Alphabet.IUPAC.IUPACUnambiguousDNA" class="py-name" href="#" onclick="return doclink('link-18', 'IUPACUnambiguousDNA', 'link-18');">IUPACUnambiguousDNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> <tt id="link-19" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-19', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_dna_weights=Bio.Data.IUPACData-module.html#unambiguous_dna_weights"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-20', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt id="link-21" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-21', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-22" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-22', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Class Bio.Alphabet.IUPAC.IUPACAmbiguousDNA=Bio.Alphabet.IUPAC.IUPACAmbiguousDNA-class.html"><a title="Bio.Alphabet.IUPAC.IUPACAmbiguousDNA" class="py-name" href="#" onclick="return doclink('link-23', 'IUPACAmbiguousDNA', 'link-23');">IUPACAmbiguousDNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt id="link-24" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-24', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Variable Bio.Data.IUPACData.avg_ambiguous_dna_weights=Bio.Data.IUPACData-module.html#avg_ambiguous_dna_weights"><a title="Bio.Data.IUPACData.avg_ambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-25', 'avg_ambiguous_dna_weights', 'link-25');">avg_ambiguous_dna_weights</a></tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt id="link-26" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-26', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-27" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-27', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Class Bio.Alphabet.IUPAC.IUPACUnambiguousRNA=Bio.Alphabet.IUPAC.IUPACUnambiguousRNA-class.html"><a title="Bio.Alphabet.IUPAC.IUPACUnambiguousRNA" class="py-name" href="#" onclick="return doclink('link-28', 'IUPACUnambiguousRNA', 'link-28');">IUPACUnambiguousRNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt id="link-29" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-29', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_rna_weights=Bio.Data.IUPACData-module.html#unambiguous_rna_weights"><a title="Bio.Data.IUPACData.unambiguous_rna_weights" class="py-name" href="#" onclick="return doclink('link-30', 'unambiguous_rna_weights', 'link-30');">unambiguous_rna_weights</a></tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt id="link-31" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-31', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-32" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-32', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-33" class="py-name" targets="Class Bio.Alphabet.IUPAC.IUPACAmbiguousRNA=Bio.Alphabet.IUPAC.IUPACAmbiguousRNA-class.html"><a title="Bio.Alphabet.IUPAC.IUPACAmbiguousRNA" class="py-name" href="#" onclick="return doclink('link-33', 'IUPACAmbiguousRNA', 'link-33');">IUPACAmbiguousRNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt id="link-34" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-34', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-35" class="py-name" targets="Variable Bio.Data.IUPACData.avg_ambiguous_rna_weights=Bio.Data.IUPACData-module.html#avg_ambiguous_rna_weights"><a title="Bio.Data.IUPACData.avg_ambiguous_rna_weights" class="py-name" href="#" onclick="return doclink('link-35', 'avg_ambiguous_rna_weights', 'link-35');">avg_ambiguous_rna_weights</a></tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt id="link-36" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-36', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-37" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-37', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-38" class="py-name" targets="Class Bio.Alphabet.IUPAC.IUPACProtein=Bio.Alphabet.IUPAC.IUPACProtein-class.html"><a title="Bio.Alphabet.IUPAC.IUPACProtein" class="py-name" href="#" onclick="return doclink('link-38', 'IUPACProtein', 'link-38');">IUPACProtein</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt id="link-39" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-39', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Variable Bio.Data.IUPACData.protein_weights=Bio.Data.IUPACData-module.html#protein_weights"><a title="Bio.Data.IUPACData.protein_weights" class="py-name" href="#" onclick="return doclink('link-40', 'protein_weights', 'link-40');">protein_weights</a></tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt id="link-41" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-41', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-42" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-42', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-43" class="py-name" targets="Class Bio.Alphabet.IUPAC.ExtendedIUPACProtein=Bio.Alphabet.IUPAC.ExtendedIUPACProtein-class.html"><a title="Bio.Alphabet.IUPAC.ExtendedIUPACProtein" class="py-name" href="#" onclick="return doclink('link-43', 'ExtendedIUPACProtein', 'link-43');">ExtendedIUPACProtein</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt id="link-44" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-44', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Variable Bio.Data.IUPACData.avg_extended_protein_weights=Bio.Data.IUPACData-module.html#avg_extended_protein_weights"><a title="Bio.Data.IUPACData.avg_extended_protein_weights" class="py-name" href="#" onclick="return doclink('link-45', 'avg_extended_protein_weights', 'link-45');">avg_extended_protein_weights</a></tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt id="link-46" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-46', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-47" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-47', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACUnambiguousDNA" class="py-name" href="#" onclick="return doclink('link-48', 'IUPACUnambiguousDNA', 'link-18');">IUPACUnambiguousDNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_range_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-49', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_dna_weight_ranges=Bio.Data.IUPACData-module.html#unambiguous_dna_weight_ranges"><a title="Bio.Data.IUPACData.unambiguous_dna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-50', 'unambiguous_dna_weight_ranges', 'link-50');">unambiguous_dna_weight_ranges</a></tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt id="link-51" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-51', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-52" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-52', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACAmbiguousDNA" class="py-name" href="#" onclick="return doclink('link-53', 'IUPACAmbiguousDNA', 'link-23');">IUPACAmbiguousDNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_range_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt id="link-54" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-54', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_dna_weight_ranges=Bio.Data.IUPACData-module.html#ambiguous_dna_weight_ranges"><a title="Bio.Data.IUPACData.ambiguous_dna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-55', 'ambiguous_dna_weight_ranges', 'link-55');">ambiguous_dna_weight_ranges</a></tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt id="link-56" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-56', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-57" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-57', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACUnambiguousRNA" class="py-name" href="#" onclick="return doclink('link-58', 'IUPACUnambiguousRNA', 'link-28');">IUPACUnambiguousRNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_range_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt id="link-59" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-59', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-60" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_rna_weight_ranges=Bio.Data.IUPACData-module.html#unambiguous_rna_weight_ranges"><a title="Bio.Data.IUPACData.unambiguous_rna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-60', 'unambiguous_rna_weight_ranges', 'link-60');">unambiguous_rna_weight_ranges</a></tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt id="link-61" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-61', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-62" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-62', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACAmbiguousRNA" class="py-name" href="#" onclick="return doclink('link-63', 'IUPACAmbiguousRNA', 'link-33');">IUPACAmbiguousRNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_range_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt id="link-64" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-64', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_rna_weight_ranges=Bio.Data.IUPACData-module.html#ambiguous_rna_weight_ranges"><a title="Bio.Data.IUPACData.ambiguous_rna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-65', 'ambiguous_rna_weight_ranges', 'link-65');">ambiguous_rna_weight_ranges</a></tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt id="link-66" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-66', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-67" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-67', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACProtein" class="py-name" href="#" onclick="return doclink('link-68', 'IUPACProtein', 'link-38');">IUPACProtein</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_range_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt id="link-69" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-69', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-70" class="py-name" targets="Variable Bio.Data.IUPACData.protein_weight_ranges=Bio.Data.IUPACData-module.html#protein_weight_ranges"><a title="Bio.Data.IUPACData.protein_weight_ranges" class="py-name" href="#" onclick="return doclink('link-70', 'protein_weight_ranges', 'link-70');">protein_weight_ranges</a></tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt id="link-71" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-71', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-72" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-72', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="Bio.Alphabet.IUPAC.ExtendedIUPACProtein" class="py-name" href="#" onclick="return doclink('link-73', 'ExtendedIUPACProtein', 'link-43');">ExtendedIUPACProtein</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"weight_range_table"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt id="link-74" class="py-name"><a title="Bio.Data.IUPACData" class="py-name" href="#" onclick="return doclink('link-74', 'IUPACData', 'link-10');">IUPACData</a></tt><tt class="py-op">.</tt><tt id="link-75" class="py-name" targets="Variable Bio.Data.IUPACData.extended_protein_weight_ranges=Bio.Data.IUPACData-module.html#extended_protein_weight_ranges"><a title="Bio.Data.IUPACData.extended_protein_weight_ranges" class="py-name" href="#" onclick="return doclink('link-75', 'extended_protein_weight_ranges', 'link-75');">extended_protein_weight_ranges</a></tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"><tt class="py-comment"># transcriber objects</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt id="link-76" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-76', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-77" class="py-name"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-77', 'Alphabet', 'link-4');">Alphabet</a></tt><tt class="py-op">.</tt><tt id="link-78" class="py-name" targets="Class Bio.Alphabet.DNAAlphabet=Bio.Alphabet.DNAAlphabet-class.html"><a title="Bio.Alphabet.DNAAlphabet" class="py-name" href="#" onclick="return doclink('link-78', 'DNAAlphabet', 'link-78');">DNAAlphabet</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"transcriber"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt id="link-79" class="py-name"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-79', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">.</tt><tt id="link-80" class="py-name" targets="Variable Bio.Transcribe.generic_transcriber=Bio.Transcribe-module.html#generic_transcriber"><a title="Bio.Transcribe.generic_transcriber" class="py-name" href="#" onclick="return doclink('link-80', 'generic_transcriber', 'link-80');">generic_transcriber</a></tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"><tt id="link-81" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-81', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-82" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-82', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACAmbiguousDNA" class="py-name" href="#" onclick="return doclink('link-83', 'IUPACAmbiguousDNA', 'link-23');">IUPACAmbiguousDNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"transcriber"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt id="link-84" class="py-name"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-84', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name" targets="Variable Bio.Transcribe.ambiguous_transcriber=Bio.Transcribe-module.html#ambiguous_transcriber"><a title="Bio.Transcribe.ambiguous_transcriber" class="py-name" href="#" onclick="return doclink('link-85', 'ambiguous_transcriber', 'link-85');">ambiguous_transcriber</a></tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt id="link-86" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-86', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-87" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-87', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACUnambiguousDNA" class="py-name" href="#" onclick="return doclink('link-88', 'IUPACUnambiguousDNA', 'link-18');">IUPACUnambiguousDNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"transcriber"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt id="link-89" class="py-name"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-89', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">.</tt><tt id="link-90" class="py-name" targets="Variable Bio.Transcribe.unambiguous_transcriber=Bio.Transcribe-module.html#unambiguous_transcriber"><a title="Bio.Transcribe.unambiguous_transcriber" class="py-name" href="#" onclick="return doclink('link-90', 'unambiguous_transcriber', 'link-90');">unambiguous_transcriber</a></tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt id="link-91" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-91', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-92" class="py-name"><a title="Bio.Alphabet
Bio.Alphabet.Alphabet" class="py-name" href="#" onclick="return doclink('link-92', 'Alphabet', 'link-4');">Alphabet</a></tt><tt class="py-op">.</tt><tt id="link-93" class="py-name" targets="Class Bio.Alphabet.RNAAlphabet=Bio.Alphabet.RNAAlphabet-class.html"><a title="Bio.Alphabet.RNAAlphabet" class="py-name" href="#" onclick="return doclink('link-93', 'RNAAlphabet', 'link-93');">RNAAlphabet</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"transcriber"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt id="link-94" class="py-name"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-94', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="Bio.Transcribe.generic_transcriber" class="py-name" href="#" onclick="return doclink('link-95', 'generic_transcriber', 'link-80');">generic_transcriber</a></tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt id="link-96" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-96', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-97" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-97', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACAmbiguousRNA" class="py-name" href="#" onclick="return doclink('link-98', 'IUPACAmbiguousRNA', 'link-33');">IUPACAmbiguousRNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"transcriber"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt id="link-99" class="py-name"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-99', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="Bio.Transcribe.ambiguous_transcriber" class="py-name" href="#" onclick="return doclink('link-100', 'ambiguous_transcriber', 'link-85');">ambiguous_transcriber</a></tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"><tt id="link-101" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-101', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-102" class="py-name"><a title="Bio.Alphabet.IUPAC" class="py-name" href="#" onclick="return doclink('link-102', 'IUPAC', 'link-7');">IUPAC</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="Bio.Alphabet.IUPAC.IUPACUnambiguousRNA" class="py-name" href="#" onclick="return doclink('link-103', 'IUPACUnambiguousRNA', 'link-28');">IUPACUnambiguousRNA</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"transcriber"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> \ </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt id="link-104" class="py-name"><a title="Bio.Transcribe
Bio.Transcribe.Transcribe" class="py-name" href="#" onclick="return doclink('link-104', 'Transcribe', 'link-12');">Transcribe</a></tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="Bio.Transcribe.unambiguous_transcriber" class="py-name" href="#" onclick="return doclink('link-105', 'unambiguous_transcriber', 'link-90');">unambiguous_transcriber</a></tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt class="py-comment"># translator objects</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">for</tt> <tt id="link-106" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.name=Bio.Encodings.IUPACEncoding-module.html#name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-106', 'name', 'link-106');">name</a></tt><tt class="py-op">,</tt> <tt id="link-107" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.obj=Bio.Encodings.IUPACEncoding-module.html#obj"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-107', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-108" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-108', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-109" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_dna_by_name=Bio.Data.CodonTable-module.html#unambiguous_dna_by_name,Variable Bio.Translate.unambiguous_dna_by_name=Bio.Translate-module.html#unambiguous_dna_by_name"><a title="Bio.Data.CodonTable.unambiguous_dna_by_name
Bio.Translate.unambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-109', 'unambiguous_dna_by_name', 'link-109');">unambiguous_dna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-110" class="py-name" targets="Method Bio.Crystal.Crystal.items()=Bio.Crystal.Crystal-class.html#items,Method Bio.EUtils.MultiDict._BaseMultiDict.items()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#items,Variable Bio.Entrez.SerialSet.items=Bio.Entrez.SerialSet-module.html#items,Method Bio.GenBank.NCBIDictionary.items()=Bio.GenBank.NCBIDictionary-class.html#items,Method Bio.Mindy.BaseDB.DictLookup.items()=Bio.Mindy.BaseDB.DictLookup-class.html#items,Method Bio.Prosite.ExPASyDictionary.items()=Bio.Prosite.ExPASyDictionary-class.html#items,Method Bio.Prosite.Prodoc.ExPASyDictionary.items()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#items,Method Bio.PubMed.Dictionary.items()=Bio.PubMed.Dictionary-class.html#items,Method Bio.SwissProt.SProt.ExPASyDictionary.items()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#items,Method Bio.config.Registry.Registry.items()=Bio.config.Registry.Registry-class.html#items,Function Bio.listfns.items()=Bio.listfns-module.html#items,Method BioSQL.BioSeqDatabase.BioSeqDatabase.items()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#items,Method BioSQL.BioSeqDatabase.DBServer.items()=BioSQL.BioSeqDatabase.DBServer-class.html#items,Method Martel.Parser.MartelAttributeList.items()=Martel.Parser.MartelAttributeList-class.html#items"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-110', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt id="link-111" class="py-name" targets="Variable Bio.Encodings.IUPACEncoding.property=Bio.Encodings.IUPACEncoding-module.html#property"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-111', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-112" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-112', 'name', 'link-106');">name</a></tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt id="link-113" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-113', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-114" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-114', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-115" class="py-name" targets="Variable Bio.CDD.cdd_format.table=Bio.CDD.cdd_format-module.html#table,Variable Bio.expressions.blast.ncbiblast.table=Bio.expressions.blast.ncbiblast-module.html#table"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-115', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-116" class="py-name" targets="Variable Bio.Data.CodonTable.CodonTable.nucleotide_alphabet=Bio.Data.CodonTable.CodonTable-class.html#nucleotide_alphabet,Variable Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet=Bio.Data.CodonTable.NCBICodonTable-class.html#nucleotide_alphabet,Variable Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet=Bio.Data.CodonTable.NCBICodonTableDNA-class.html#nucleotide_alphabet,Variable Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet=Bio.Data.CodonTable.NCBICodonTableRNA-class.html#nucleotide_alphabet"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-116', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-117" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-117', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-118" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-118', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt id="link-119" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-119', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-120" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-120', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-121" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-121', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-122" class="py-name" targets="Variable Bio.Data.CodonTable.CodonTable.protein_alphabet=Bio.Data.CodonTable.CodonTable-class.html#protein_alphabet,Variable Bio.Data.CodonTable.NCBICodonTable.protein_alphabet=Bio.Data.CodonTable.NCBICodonTable-class.html#protein_alphabet"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-122', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-123" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-123', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-124" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-124', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-125" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-125', 'name', 'link-106');">name</a></tt><tt class="py-op">,</tt> <tt id="link-126" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-126', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-127" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-127', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-128" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_rna_by_name=Bio.Data.CodonTable-module.html#unambiguous_rna_by_name,Variable Bio.Translate.unambiguous_rna_by_name=Bio.Translate-module.html#unambiguous_rna_by_name"><a title="Bio.Data.CodonTable.unambiguous_rna_by_name
Bio.Translate.unambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-128', 'unambiguous_rna_by_name', 'link-128');">unambiguous_rna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-129" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-129', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt id="link-130" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-130', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-131" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-131', 'name', 'link-106');">name</a></tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt id="link-132" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-132', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-133" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-133', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-134', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-135" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-135', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-136" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-136', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-137" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-137', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt id="link-138" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-138', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"rna_translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-139" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-139', 'name', 'link-106');">name</a></tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt id="link-140" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-140', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-141" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-141', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-142" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-142', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-143" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-143', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-144" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-144', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-145" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-145', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-146" class="py-name" targets="Variable Bio.Data.CodonTable.id=Bio.Data.CodonTable-module.html#id,Variable Bio.Encodings.IUPACEncoding.id=Bio.Encodings.IUPACEncoding-module.html#id,Method Bio.GFF.Feature.id()=Bio.GFF.Feature-class.html#id"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-146', 'id', 'link-146');">id</a></tt><tt class="py-op">,</tt> <tt id="link-147" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-147', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-148" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-148', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-149" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_dna_by_id=Bio.Data.CodonTable-module.html#unambiguous_dna_by_id,Variable Bio.Translate.unambiguous_dna_by_id=Bio.Translate-module.html#unambiguous_dna_by_id"><a title="Bio.Data.CodonTable.unambiguous_dna_by_id
Bio.Translate.unambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-149', 'unambiguous_dna_by_id', 'link-149');">unambiguous_dna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-150" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-150', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt id="link-151" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-151', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-152" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-152', 'id', 'link-146');">id</a></tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt id="link-153" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-153', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-154" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-154', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-155', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-156', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-157" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-157', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-158" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-158', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt id="link-159" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-159', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-160" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-160', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-161', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-162" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-162', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-163" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-163', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-164" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-164', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-165" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-165', 'id', 'link-146');">id</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-166" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-166', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-167" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-167', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-168', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-169" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-169', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-170" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-170', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt id="link-171" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-171', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-172" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-172', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-173', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-174', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-175" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-175', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-176" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-176', 'id', 'link-146');">id</a></tt><tt class="py-op">,</tt> <tt id="link-177" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-177', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-178" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-178', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-179" class="py-name" targets="Variable Bio.Data.CodonTable.unambiguous_rna_by_id=Bio.Data.CodonTable-module.html#unambiguous_rna_by_id,Variable Bio.Translate.unambiguous_rna_by_id=Bio.Translate-module.html#unambiguous_rna_by_id"><a title="Bio.Data.CodonTable.unambiguous_rna_by_id
Bio.Translate.unambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-179', 'unambiguous_rna_by_id', 'link-179');">unambiguous_rna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-180" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-180', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt id="link-181" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-181', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-182" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-182', 'id', 'link-146');">id</a></tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt id="link-183" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-183', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-184" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-184', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-185', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-186" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-186', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-187" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-187', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-188" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-188', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt id="link-189" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-189', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"rna_translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-190" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-190', 'id', 'link-146');">id</a></tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt id="link-191" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-191', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-192" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-192', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-193" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-193', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-194" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-194', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-195" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-195', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-196" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-196', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-197" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-197', 'id', 'link-146');">id</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt id="link-198" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-198', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-199" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-199', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-200" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-200', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-201" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-201', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-202" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-202', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt id="link-203" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-203', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-204" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-204', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-205" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-205', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-206', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"rna_translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-207" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-207', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt class="py-comment"># ambiguous translator objects</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">for</tt> <tt id="link-208" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-208', 'name', 'link-106');">name</a></tt><tt class="py-op">,</tt> <tt id="link-209" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-209', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-210" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-210', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-211" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_dna_by_name=Bio.Data.CodonTable-module.html#ambiguous_dna_by_name,Variable Bio.Translate.ambiguous_dna_by_name=Bio.Translate-module.html#ambiguous_dna_by_name"><a title="Bio.Data.CodonTable.ambiguous_dna_by_name
Bio.Translate.ambiguous_dna_by_name" class="py-name" href="#" onclick="return doclink('link-211', 'ambiguous_dna_by_name', 'link-211');">ambiguous_dna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-212" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-212', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt id="link-213" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-213', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-214" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-214', 'name', 'link-106');">name</a></tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt id="link-215" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-215', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-216" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-216', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-217" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-217', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-218" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-218', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-219" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-219', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-220" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-220', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt id="link-221" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-221', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"ambiguous_translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-222" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-222', 'name', 'link-106');">name</a></tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt id="link-223" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-223', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-224" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-224', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-225" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-225', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-226" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-226', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-227" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-227', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-228" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-228', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-229" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-229', 'name', 'link-106');">name</a></tt><tt class="py-op">,</tt> <tt id="link-230" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-230', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-231" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-231', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-232" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_rna_by_name=Bio.Data.CodonTable-module.html#ambiguous_rna_by_name,Variable Bio.Translate.ambiguous_rna_by_name=Bio.Translate-module.html#ambiguous_rna_by_name"><a title="Bio.Data.CodonTable.ambiguous_rna_by_name
Bio.Translate.ambiguous_rna_by_name" class="py-name" href="#" onclick="return doclink('link-232', 'ambiguous_rna_by_name', 'link-232');">ambiguous_rna_by_name</a></tt><tt class="py-op">.</tt><tt id="link-233" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-233', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt id="link-234" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-234', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-235" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-235', 'name', 'link-106');">name</a></tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt id="link-236" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-236', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-237" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-237', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-238" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-238', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-239" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-239', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-240" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-240', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-241" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-241', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt id="link-242" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-242', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"ambiguous_rna_translator.name."</tt> <tt class="py-op">+</tt> <tt id="link-243" class="py-name"><a title="Bio.Encodings.IUPACEncoding.name" class="py-name" href="#" onclick="return doclink('link-243', 'name', 'link-106');">name</a></tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt id="link-244" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-244', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-245" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-245', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-246" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-246', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-247" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-247', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-248" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-248', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-249" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-249', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-250" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-250', 'id', 'link-146');">id</a></tt><tt class="py-op">,</tt> <tt id="link-251" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-251', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-252" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-252', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-253" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_dna_by_id=Bio.Data.CodonTable-module.html#ambiguous_dna_by_id,Variable Bio.Translate.ambiguous_dna_by_id=Bio.Translate-module.html#ambiguous_dna_by_id"><a title="Bio.Data.CodonTable.ambiguous_dna_by_id
Bio.Translate.ambiguous_dna_by_id" class="py-name" href="#" onclick="return doclink('link-253', 'ambiguous_dna_by_id', 'link-253');">ambiguous_dna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-254" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-254', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt id="link-255" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-255', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-256" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-256', 'id', 'link-146');">id</a></tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt id="link-257" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-257', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-258" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-258', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-259" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-259', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-260" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-260', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-261" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-261', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-262" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-262', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt id="link-263" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-263', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"ambiguous_translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-264" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-264', 'id', 'link-146');">id</a></tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt id="link-265" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-265', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-266" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-266', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-267" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-267', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-268" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-268', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-269" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-269', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-270" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-270', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-271" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-271', 'id', 'link-146');">id</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt id="link-272" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-272', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-273" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-273', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-274" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-274', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-275" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-275', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-276" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-276', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt id="link-277" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-277', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-278" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-278', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-279" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-279', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-280" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-280', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"ambiguous_translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-281" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-281', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-282" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-282', 'id', 'link-146');">id</a></tt><tt class="py-op">,</tt> <tt id="link-283" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-283', 'obj', 'link-107');">obj</a></tt> <tt class="py-keyword">in</tt> <tt id="link-284" class="py-name"><a title="Bio.Translate" class="py-name" href="#" onclick="return doclink('link-284', 'Translate', 'link-13');">Translate</a></tt><tt class="py-op">.</tt><tt id="link-285" class="py-name" targets="Variable Bio.Data.CodonTable.ambiguous_rna_by_id=Bio.Data.CodonTable-module.html#ambiguous_rna_by_id,Variable Bio.Translate.ambiguous_rna_by_id=Bio.Translate-module.html#ambiguous_rna_by_id"><a title="Bio.Data.CodonTable.ambiguous_rna_by_id
Bio.Translate.ambiguous_rna_by_id" class="py-name" href="#" onclick="return doclink('link-285', 'ambiguous_rna_by_id', 'link-285');">ambiguous_rna_by_id</a></tt><tt class="py-op">.</tt><tt id="link-286" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-286', 'items', 'link-110');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt id="link-287" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-287', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-288" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-288', 'id', 'link-146');">id</a></tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt id="link-289" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-289', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-290" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-290', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-291" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-291', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-292" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-292', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-293" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-293', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-294" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-294', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt id="link-295" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-295', 'property', 'link-111');">property</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"ambiguous_rna_translator.id.%d"</tt> <tt class="py-op">%</tt> <tt id="link-296" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-296', 'id', 'link-146');">id</a></tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt id="link-297" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-297', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-298" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-298', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-299" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-299', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-300" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-300', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt id="link-301" class="py-name"><a title="Bio.Encodings.IUPACEncoding.property" class="py-name" href="#" onclick="return doclink('link-301', 'property', 'link-111');">property</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-302" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-302', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-303" class="py-name"><a title="Bio.Data.CodonTable.id
Bio.Encodings.IUPACEncoding.id
Bio.GFF.Feature.id" class="py-name" href="#" onclick="return doclink('link-303', 'id', 'link-146');">id</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt id="link-304" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-304', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-305" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-305', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-306" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-306', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-307" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet" class="py-name" href="#" onclick="return doclink('link-307', 'nucleotide_alphabet', 'link-116');">nucleotide_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-308" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-308', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt id="link-309" class="py-name"><a title="Bio.Encodings.IUPACEncoding.set_prop" class="py-name" href="#" onclick="return doclink('link-309', 'set_prop', 'link-14');">set_prop</a></tt><tt class="py-op">[</tt><tt id="link-310" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-310', 'obj', 'link-107');">obj</a></tt><tt class="py-op">.</tt><tt id="link-311" class="py-name"><a title="Bio.CDD.cdd_format.table
Bio.expressions.blast.ncbiblast.table" class="py-name" href="#" onclick="return doclink('link-311', 'table', 'link-115');">table</a></tt><tt class="py-op">.</tt><tt id="link-312" class="py-name"><a title="Bio.Data.CodonTable.CodonTable.protein_alphabet
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet" class="py-name" href="#" onclick="return doclink('link-312', 'protein_alphabet', 'link-122');">protein_alphabet</a></tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">"ambiguous_rna_translator"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-313" class="py-name"><a title="Bio.Encodings.IUPACEncoding.obj" class="py-name" href="#" onclick="return doclink('link-313', 'obj', 'link-107');">obj</a></tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> </tt><script type="text/javascript">
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