<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Encodings.IUPACEncoding</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Encodings-module.html">Package Encodings</a> :: Module IUPACEncoding </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Encodings.IUPACEncoding-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== MODULE DESCRIPTION ==================== --> <h1 class="epydoc">Module IUPACEncoding</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Encodings.IUPACEncoding-pysrc.html">source code</a></span></p> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.Encodings.IUPACEncoding-module.html#set_prop" class="summary-name">set_prop</a> = <code title="{<class Bio.Alphabet.DNAAlphabet at 0xdf7f50>: {'transcriber': <Bio.Tr\ anscribe.Transcribe instance at 0x1088ef0>}, <class Bio.Alphabet.IUPAC\ .IUPACAmbiguousDNA at 0xe00590>: {'translator.id.6': <Bio.Translate.Tr\ anslator instance at 0x12e9638>, 'translator.name.Mold Mitochondrial':\ <Bio.Translate.Translator instance at 0x12e5ea8>, 'translator.id.5': \ <Bio.Translate.Translator instance at 0x12e95f0>, 'translator.id.2': <\ Bio.Translate.Translator instance at 0x12e9518>, 'translator.name.Dasy\ cladacean Nuclear': <Bio.Translate.Translator instance at 0x12e93b0>, \ ...">{<class Bio.Alphabet.DNAAlphabet at 0xdf7f50>: {'tr<code class="variable-ellipsis">...</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="id"></a><span class="summary-name">id</span> = <code title="15">15</code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="name"></a><span class="summary-name">name</span> = <code title="'Echinoderm Mitochondrial'"><code class="variable-quote">'</code><code class="variable-string">Echinoderm Mitochondrial</code><code class="variable-quote">'</code></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="obj"></a><span class="summary-name">obj</span> = <code title="<Bio.Translate.Translator instance at 0x12e83b0>"><Bio.Translate.Translator instance at 0x12e83b0></code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="property"></a><span class="summary-name">property</span> = <code title="'ambiguous_rna_translator.id.15'"><code class="variable-quote">'</code><code class="variable-string">ambiguous_rna_translator.id.15</code><code class="variable-quote">'</code></code> </td> </tr> </table> <!-- ==================== VARIABLES DETAILS ==================== --> <a name="section-VariablesDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-VariablesDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="set_prop"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">set_prop</h3> <dl class="fields"> </dl> <dl class="fields"> <dt>Value:</dt> <dd><table><tr><td><pre class="variable"> {<class Bio.Alphabet.DNAAlphabet at 0xdf7f50>: {'transcriber': <Bio.Tr<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> anscribe.Transcribe instance at 0x1088ef0>}, <class Bio.Alphabet.IUPAC<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> .IUPACAmbiguousDNA at 0xe00590>: {'translator.id.6': <Bio.Translate.Tr<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> anslator instance at 0x12e9638>, 'translator.name.Mold Mitochondrial':<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> <Bio.Translate.Translator instance at 0x12e5ea8>, 'translator.id.5': <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> <Bio.Translate.Translator instance at 0x12e95f0>, 'translator.id.2': <<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> Bio.Translate.Translator instance at 0x12e9518>, 'translator.name.Dasy<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> cladacean Nuclear': <Bio.Translate.Translator instance at 0x12e93b0>, <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span> <code class="variable-ellipsis">...</code> </pre></td></tr></table> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table 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