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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.Emboss-module.html">Package Emboss</a> ::
Module primersearch_format
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<h1 class="epydoc">Source Code for <a href="Bio.Emboss.primersearch_format-module.html">Module Bio.Emboss.primersearch_format</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-docstring">"""Martel format for primersearch output files,</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable Bio.Emboss.primer3_format.blank_line=Bio.Emboss.primer3_format-module.html#blank_line,Variable Bio.Emboss.primersearch_format.blank_line=Bio.Emboss.primersearch_format-module.html#blank_line,Variable Bio.MetaTool.metatool_format.blank_line=Bio.MetaTool.metatool_format-module.html#blank_line,Variable Bio.expressions.transfac.blank_line=Bio.expressions.transfac-module.html#blank_line"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-1', 'blank_line', 'link-1');">blank_line</a></tt> <tt class="py-op">=</tt> <tt id="link-2" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-2', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Class Martel.Expression.AnyEol=Martel.Expression.AnyEol-class.html"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-3', 'AnyEol', 'link-3');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-comment"># Primer name D1S2660</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-4" class="py-name" targets="Method Bio.Emboss.Primer._PrimerSearchRecordConsumer.primer_name()=Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#primer_name,Variable Bio.Emboss.primersearch_format.primer_name=Bio.Emboss.primersearch_format-module.html#primer_name"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.primer_name
Bio.Emboss.primersearch_format.primer_name" class="py-name" href="#" onclick="return doclink('link-4', 'primer_name', 'link-4');">primer_name</a></tt> <tt class="py-op">=</tt> <tt id="link-5" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-5', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-6', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primer_name"</tt><tt class="py-op">,</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> <tt id="link-7" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-7', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-8', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt id="link-9" class="py-name" targets="Variable Bio.Emboss.primersearch_format.primer_name_line=Bio.Emboss.primersearch_format-module.html#primer_name_line"><a title="Bio.Emboss.primersearch_format.primer_name_line" class="py-name" href="#" onclick="return doclink('link-9', 'primer_name_line', 'link-9');">primer_name_line</a></tt> <tt class="py-op">=</tt> <tt id="link-10" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-10', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Class Martel.Expression.Str=Martel.Expression.Str-class.html,Function Martel.Str()=Martel-module.html#Str"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-11', 'Str', 'link-11');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"Primer name "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-12" class="py-name"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.primer_name
Bio.Emboss.primersearch_format.primer_name" class="py-name" href="#" onclick="return doclink('link-12', 'primer_name', 'link-4');">primer_name</a></tt> </tt>
<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> </tt>
<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-comment"># Amplimer 1</tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-13" class="py-name" targets="Method Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier()=Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#amplifier,Variable Bio.Emboss.primersearch_format.amplifier=Bio.Emboss.primersearch_format-module.html#amplifier"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier
Bio.Emboss.primersearch_format.amplifier" class="py-name" href="#" onclick="return doclink('link-13', 'amplifier', 'link-13');">amplifier</a></tt> <tt class="py-op">=</tt> <tt id="link-14" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-14', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-15', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"amplifier"</tt><tt class="py-op">,</tt> </tt>
<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> <tt id="link-16" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-16', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Function Martel.Re()=Martel-module.html#Re"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-17', 'Re', 'link-17');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"><tt id="link-18" class="py-name" targets="Variable Bio.Emboss.primersearch_format.amplimer_line=Bio.Emboss.primersearch_format-module.html#amplimer_line"><a title="Bio.Emboss.primersearch_format.amplimer_line" class="py-name" href="#" onclick="return doclink('link-18', 'amplimer_line', 'link-18');">amplimer_line</a></tt> <tt class="py-op">=</tt> <tt id="link-19" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-19', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-20', 'Str', 'link-11');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"Amplimer "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-21" class="py-name"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier
Bio.Emboss.primersearch_format.amplifier" class="py-name" href="#" onclick="return doclink('link-21', 'amplifier', 'link-13');">amplifier</a></tt> <tt class="py-op">+</tt> <tt id="link-22" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-22', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-23', 'AnyEol', 'link-3');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-comment"># Sequence: AC074298 AC074298</tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Telomere associated sequence for Arabidopsis thaliana TEL1N</tt> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># CCGGTTTCTCTGGTTGAAAA hits forward strand at 114 with 0 mismatches</tt> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># TCACATTCCCAAATGTAGATCG hits reverse strand at [114] with 0 mismatches</tt> </tt>
<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-24" class="py-name" targets="Variable Bio.Emboss.primersearch_format.seq_indent=Bio.Emboss.primersearch_format-module.html#seq_indent"><a title="Bio.Emboss.primersearch_format.seq_indent" class="py-name" href="#" onclick="return doclink('link-24', 'seq_indent', 'link-24');">seq_indent</a></tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-25', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-26', 'Str', 'link-11');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"\t"</tt><tt class="py-op">)</tt> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> </tt>
<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"><tt id="link-27" class="py-name" targets="Variable Bio.Emboss.primersearch_format.sequence_id=Bio.Emboss.primersearch_format-module.html#sequence_id"><a title="Bio.Emboss.primersearch_format.sequence_id" class="py-name" href="#" onclick="return doclink('link-27', 'sequence_id', 'link-27');">sequence_id</a></tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-28', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-29', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence_id"</tt><tt class="py-op">,</tt> </tt>
<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt id="link-30" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-30', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-31', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"><tt id="link-32" class="py-name" targets="Variable Bio.Emboss.primersearch_format.sequence_descr=Bio.Emboss.primersearch_format-module.html#sequence_descr"><a title="Bio.Emboss.primersearch_format.sequence_descr" class="py-name" href="#" onclick="return doclink('link-32', 'sequence_descr', 'link-32');">sequence_descr</a></tt> <tt class="py-op">=</tt> <tt id="link-33" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-33', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-34', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequence_descr"</tt><tt class="py-op">,</tt> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt id="link-35" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-35', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-36', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"><tt id="link-37" class="py-name" targets="Variable Bio.Emboss.primersearch_format.sequence_info=Bio.Emboss.primersearch_format-module.html#sequence_info,Variable Bio.expressions.hmmpfam.sequence_info=Bio.expressions.hmmpfam-module.html#sequence_info"><a title="Bio.Emboss.primersearch_format.sequence_info
Bio.expressions.hmmpfam.sequence_info" class="py-name" href="#" onclick="return doclink('link-37', 'sequence_info', 'link-37');">sequence_info</a></tt> <tt class="py-op">=</tt> <tt id="link-38" class="py-name"><a title="Bio.Emboss.primersearch_format.sequence_id" class="py-name" href="#" onclick="return doclink('link-38', 'sequence_id', 'link-27');">sequence_id</a></tt> <tt class="py-op">+</tt> <tt id="link-39" class="py-name"><a title="Bio.Emboss.primersearch_format.sequence_descr" class="py-name" href="#" onclick="return doclink('link-39', 'sequence_descr', 'link-32');">sequence_descr</a></tt> </tt>
<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"><tt id="link-40" class="py-name" targets="Variable Bio.Emboss.primersearch_format.forward_strand_info=Bio.Emboss.primersearch_format-module.html#forward_strand_info"><a title="Bio.Emboss.primersearch_format.forward_strand_info" class="py-name" href="#" onclick="return doclink('link-40', 'forward_strand_info', 'link-40');">forward_strand_info</a></tt> <tt class="py-op">=</tt> <tt id="link-41" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-41', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-42', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_strand_info"</tt><tt class="py-op">,</tt> </tt>
<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-43', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-44', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"><tt id="link-45" class="py-name" targets="Variable Bio.Emboss.primersearch_format.reverse_strand_info=Bio.Emboss.primersearch_format-module.html#reverse_strand_info"><a title="Bio.Emboss.primersearch_format.reverse_strand_info" class="py-name" href="#" onclick="return doclink('link-45', 'reverse_strand_info', 'link-45');">reverse_strand_info</a></tt> <tt class="py-op">=</tt> <tt id="link-46" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-46', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-47', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_strand_info"</tt><tt class="py-op">,</tt> </tt>
<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt id="link-48" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-48', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-49', 'ToEol', 'link-8');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"><tt id="link-50" class="py-name" targets="Method Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier_sequence()=Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#amplifier_sequence,Variable Bio.Emboss.primersearch_format.amplifier_sequence=Bio.Emboss.primersearch_format-module.html#amplifier_sequence"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier_sequence
Bio.Emboss.primersearch_format.amplifier_sequence" class="py-name" href="#" onclick="return doclink('link-50', 'amplifier_sequence', 'link-50');">amplifier_sequence</a></tt> <tt class="py-op">=</tt> <tt id="link-51" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-51', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-52', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"amplifier_sequence"</tt><tt class="py-op">,</tt> </tt>
<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt id="link-53" class="py-name"><a title="Bio.Emboss.primersearch_format.sequence_info
Bio.expressions.hmmpfam.sequence_info" class="py-name" href="#" onclick="return doclink('link-53', 'sequence_info', 'link-37');">sequence_info</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt id="link-54" class="py-name"><a title="Bio.Emboss.primersearch_format.forward_strand_info" class="py-name" href="#" onclick="return doclink('link-54', 'forward_strand_info', 'link-40');">forward_strand_info</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt id="link-55" class="py-name"><a title="Bio.Emboss.primersearch_format.reverse_strand_info" class="py-name" href="#" onclick="return doclink('link-55', 'reverse_strand_info', 'link-45');">reverse_strand_info</a></tt><tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"><tt id="link-56" class="py-name" targets="Variable Bio.Emboss.primersearch_format.amplifier_sequence_lines=Bio.Emboss.primersearch_format-module.html#amplifier_sequence_lines"><a title="Bio.Emboss.primersearch_format.amplifier_sequence_lines" class="py-name" href="#" onclick="return doclink('link-56', 'amplifier_sequence_lines', 'link-56');">amplifier_sequence_lines</a></tt> <tt class="py-op">=</tt> <tt id="link-57" class="py-name"><a title="Bio.Emboss.primersearch_format.seq_indent" class="py-name" href="#" onclick="return doclink('link-57', 'seq_indent', 'link-24');">seq_indent</a></tt> <tt class="py-op">+</tt> <tt id="link-58" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-58', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-59', 'Str', 'link-11');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"Sequence: "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt id="link-60" class="py-name"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier_sequence
Bio.Emboss.primersearch_format.amplifier_sequence" class="py-name" href="#" onclick="return doclink('link-60', 'amplifier_sequence', 'link-50');">amplifier_sequence</a></tt> </tt>
<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"> </tt>
<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt id="link-61" class="py-name" targets="Method Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier_length()=Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#amplifier_length,Variable Bio.Emboss.primersearch_format.amplifier_length=Bio.Emboss.primersearch_format-module.html#amplifier_length"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier_length
Bio.Emboss.primersearch_format.amplifier_length" class="py-name" href="#" onclick="return doclink('link-61', 'amplifier_length', 'link-61');">amplifier_length</a></tt> <tt class="py-op">=</tt> <tt id="link-62" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-62', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-63', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"amplifier_length"</tt><tt class="py-op">,</tt> </tt>
<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt id="link-64" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-64', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-65', 'Re', 'link-17');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"><tt id="link-66" class="py-name" targets="Variable Bio.Emboss.primersearch_format.amplifier_length_line=Bio.Emboss.primersearch_format-module.html#amplifier_length_line"><a title="Bio.Emboss.primersearch_format.amplifier_length_line" class="py-name" href="#" onclick="return doclink('link-66', 'amplifier_length_line', 'link-66');">amplifier_length_line</a></tt> <tt class="py-op">=</tt> <tt id="link-67" class="py-name"><a title="Bio.Emboss.primersearch_format.seq_indent" class="py-name" href="#" onclick="return doclink('link-67', 'seq_indent', 'link-24');">seq_indent</a></tt> <tt class="py-op">+</tt> <tt id="link-68" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-68', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-69', 'Str', 'link-11');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"Amplimer length: "</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt id="link-70" class="py-name"><a title="Bio.Emboss.Primer._PrimerSearchRecordConsumer.amplifier_length
Bio.Emboss.primersearch_format.amplifier_length" class="py-name" href="#" onclick="return doclink('link-70', 'amplifier_length', 'link-61');">amplifier_length</a></tt> <tt class="py-op">+</tt> <tt id="link-71" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-71', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-72', 'Str', 'link-11');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" bp"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt id="link-73" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-73', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-74', 'AnyEol', 'link-3');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> </tt>
<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"><tt id="link-75" class="py-name" targets="Variable Bio.Emboss.primer3_format.record=Bio.Emboss.primer3_format-module.html#record,Variable Bio.Emboss.primersearch_format.record=Bio.Emboss.primersearch_format-module.html#record,Method Bio.GFF.Feature.record()=Bio.GFF.Feature-class.html#record,Variable Bio.LocusLink.web_parse.record=Bio.LocusLink.web_parse-module.html#record,Variable Bio.Ndb.record=Bio.Ndb-module.html#record,Function Bio.Std.record()=Bio.Std-module.html#record,Variable Bio.expressions.blocks.record=Bio.expressions.blocks-module.html#record,Variable Bio.expressions.embl.embl65.record=Bio.expressions.embl.embl65-module.html#record,Variable Bio.expressions.fasta.record=Bio.expressions.fasta-module.html#record,Variable Bio.expressions.genbank.record=Bio.expressions.genbank-module.html#record,Variable Bio.expressions.hmmpfam.record=Bio.expressions.hmmpfam-module.html#record,Variable Bio.expressions.swissprot.ipi.record=Bio.expressions.swissprot.ipi-module.html#record,Variable Bio.expressions.swissprot.speclist.record=Bio.expressions.swissprot.speclist-module.html#record,Variable Bio.expressions.swissprot.sprot38.record=Bio.expressions.swissprot.sprot38-module.html#record,Variable Bio.expressions.swissprot.sprot40.record=Bio.expressions.swissprot.sprot40-module.html#record,Variable Martel.test.test_swissprot38.record=Martel.test.test_swissprot38-module.html#record,Variable Martel.test.testformats.swissprot38.record=Martel.test.testformats.swissprot38-module.html#record"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-75', 'record', 'link-75');">record</a></tt> <tt class="py-op">=</tt> <tt id="link-76" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-76', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-77', 'Group', 'link-6');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primersearch_record"</tt><tt class="py-op">,</tt> </tt>
<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt id="link-78" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-78', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-79" class="py-name" targets="Function Martel.Rep1()=Martel-module.html#Rep1"><a title="Martel.Rep1" class="py-name" href="#" onclick="return doclink('link-79', 'Rep1', 'link-79');">Rep1</a></tt><tt class="py-op">(</tt><tt id="link-80" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-80', 'blank_line', 'link-1');">blank_line</a></tt> <tt class="py-op">+</tt> <tt id="link-81" class="py-name"><a title="Bio.Emboss.primersearch_format.primer_name_line" class="py-name" href="#" onclick="return doclink('link-81', 'primer_name_line', 'link-9');">primer_name_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> <tt id="link-82" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-82', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-83" class="py-name" targets="Package Bio.Pathway.Rep=Bio.Pathway.Rep-module.html,Function Martel.Rep()=Martel-module.html#Rep"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-83', 'Rep', 'link-83');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-84" class="py-name"><a title="Bio.Emboss.primersearch_format.amplimer_line" class="py-name" href="#" onclick="return doclink('link-84', 'amplimer_line', 'link-18');">amplimer_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt id="link-85" class="py-name"><a title="Bio.Emboss.primersearch_format.amplifier_sequence_lines" class="py-name" href="#" onclick="return doclink('link-85', 'amplifier_sequence_lines', 'link-56');">amplifier_sequence_lines</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt id="link-86" class="py-name"><a title="Bio.Emboss.primersearch_format.amplifier_length_line" class="py-name" href="#" onclick="return doclink('link-86', 'amplifier_length_line', 'link-66');">amplifier_length_line</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> </tt><script type="text/javascript">
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