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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.Emboss-module.html">Package Emboss</a> ::
Module primersearch_format
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module primersearch_format</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Emboss.primersearch_format-pysrc.html">source code</a></span></p>
<p>Martel format for primersearch output files,</p>
<!-- ==================== VARIABLES ==================== -->
<a name="section-Variables"></a>
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<td align="left"><span class="table-header">Variables</span></td>
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<span class="summary-type"> </span>
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<a name="blank_line"></a><span class="summary-name">blank_line</span> = <code title="Martel.AnyEol()">Martel.AnyEol()</code>
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<span class="summary-type"> </span>
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<a name="primer_name"></a><span class="summary-name">primer_name</span> = <code title="Martel.Group("primer_name", Martel.ToEol())">Martel.Group("primer_name", Martel.ToEol())</code>
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<span class="summary-type"> </span>
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<a name="primer_name_line"></a><span class="summary-name">primer_name_line</span> = <code title="Martel.Str("Primer name ")+ primer_name">Martel.Str("Primer name ")+ primer_name</code>
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<span class="summary-type"> </span>
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<a name="amplifier"></a><span class="summary-name">amplifier</span> = <code title="Martel.Group("amplifier", Martel.Re("[\d]+"))">Martel.Group("amplifier", Martel.Re("[\d]+"))</code>
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<span class="summary-type"> </span>
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<a href="Bio.Emboss.primersearch_format-module.html#amplimer_line" class="summary-name">amplimer_line</a> = <code title="Martel.Str("Amplimer ")+ amplifier+ Martel.AnyEol()">Martel.Str("Amplimer ")+ amplifier+ Martel.Any<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
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<a name="seq_indent"></a><span class="summary-name">seq_indent</span> = <code title="Martel.Str("\t")">Martel.Str("\t")</code>
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<span class="summary-type"> </span>
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<a name="sequence_id"></a><span class="summary-name">sequence_id</span> = <code title="Martel.Group("sequence_id", Martel.ToEol())">Martel.Group("sequence_id", Martel.ToEol())</code>
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<span class="summary-type"> </span>
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<a name="sequence_descr"></a><span class="summary-name">sequence_descr</span> = <code title="Martel.Group("sequence_descr", Martel.ToEol())">Martel.Group("sequence_descr", Martel.ToEol())</code>
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<span class="summary-type"> </span>
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<a name="sequence_info"></a><span class="summary-name">sequence_info</span> = <code title="sequence_id+ sequence_descr">sequence_id+ sequence_descr</code>
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<span class="summary-type"> </span>
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<a href="Bio.Emboss.primersearch_format-module.html#forward_strand_info" class="summary-name">forward_strand_info</a> = <code title="Martel.Group("forward_strand_info", Martel.ToEol())">Martel.Group("forward_strand_info", Mart<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
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<a href="Bio.Emboss.primersearch_format-module.html#reverse_strand_info" class="summary-name">reverse_strand_info</a> = <code title="Martel.Group("reverse_strand_info", Martel.ToEol())">Martel.Group("reverse_strand_info", Mart<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
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<a href="Bio.Emboss.primersearch_format-module.html#amplifier_sequence" class="summary-name">amplifier_sequence</a> = <code title="Martel.Group("amplifier_sequence", sequence_info+ forward_strand_info+\
reverse_strand_info)">Martel.Group("amplifier_sequence", sequen<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
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<a href="Bio.Emboss.primersearch_format-module.html#amplifier_sequence_lines" class="summary-name">amplifier_sequence_lines</a> = <code title="seq_indent+ Martel.Str("Sequence: ")+ amplifier_sequence">seq_indent+ Martel.Str("Sequence: "<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.Emboss.primersearch_format-module.html#amplifier_length" class="summary-name">amplifier_length</a> = <code title="Martel.Group("amplifier_length", Martel.Re("[\d]+"))">Martel.Group("amplifier_length", Martel.Re(<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
</td><td class="summary">
<a href="Bio.Emboss.primersearch_format-module.html#amplifier_length_line" class="summary-name">amplifier_length_line</a> = <code title="seq_indent+ Martel.Str("Amplimer length: ")+ amplifier_length+ Martel.\
Str(" bp")+ Martel.AnyEol()">seq_indent+ Martel.Str("Amplimer lengt<code class="variable-ellipsis">...</code></code>
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<span class="summary-type"> </span>
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<a href="Bio.Emboss.primersearch_format-module.html#record" class="summary-name">record</a> = <code title="Martel.Group("primersearch_record", Martel.Rep1(blank_line+ primer_nam\
e_line+ Martel.Rep(amplimer_line+ amplifier_sequence_lines+ amplifier_\
length_line)))">Martel.Group("primersearch_record", Martel.Rep1(blank<code class="variable-ellipsis">...</code></code>
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<!-- ==================== VARIABLES DETAILS ==================== -->
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<td align="left"><span class="table-header">Variables Details</span></td>
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<a name="amplimer_line"></a>
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<tr><td>
<h3 class="epydoc">amplimer_line</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
Martel.Str("Amplimer ")+ amplifier+ Martel.AnyEol()
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
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<a name="forward_strand_info"></a>
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cellspacing="0" width="100%" bgcolor="white">
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<h3 class="epydoc">forward_strand_info</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
Martel.Group("forward_strand_info", Martel.ToEol())
</pre></td></tr></table>
</dd>
</dl>
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<a name="reverse_strand_info"></a>
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<h3 class="epydoc">reverse_strand_info</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
Martel.Group("reverse_strand_info", Martel.ToEol())
</pre></td></tr></table>
</dd>
</dl>
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<a name="amplifier_sequence"></a>
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cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">amplifier_sequence</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
Martel.Group("amplifier_sequence", sequence_info+ forward_strand_info+<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
reverse_strand_info)
</pre></td></tr></table>
</dd>
</dl>
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<a name="amplifier_sequence_lines"></a>
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cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">amplifier_sequence_lines</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
seq_indent+ Martel.Str("Sequence: ")+ amplifier_sequence
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="amplifier_length"></a>
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<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">amplifier_length</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
Martel.Group("amplifier_length", Martel.Re("[\d]+"))
</pre></td></tr></table>
</dd>
</dl>
</td></tr></table>
</div>
<a name="amplifier_length_line"></a>
<div>
<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">amplifier_length_line</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
seq_indent+ Martel.Str("Amplimer length: ")+ amplifier_length+ Martel.<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
Str(" bp")+ Martel.AnyEol()
</pre></td></tr></table>
</dd>
</dl>
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<a name="record"></a>
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<table class="details" border="1" cellpadding="3"
cellspacing="0" width="100%" bgcolor="white">
<tr><td>
<h3 class="epydoc">record</h3>
<dl class="fields">
</dl>
<dl class="fields">
<dt>Value:</dt>
<dd><table><tr><td><pre class="variable">
Martel.Group("primersearch_record", Martel.Rep1(blank_line+ primer_nam<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
e_line+ Martel.Rep(amplimer_line+ amplifier_sequence_lines+ amplifier_<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
length_line)))
</pre></td></tr></table>
</dd>
</dl>
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