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        <a href="Bio-module.html">Package&nbsp;Bio</a> ::
        <a href="Bio.Emboss-module.html">Package&nbsp;Emboss</a> ::
        Module&nbsp;primer3_format
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<h1 class="epydoc">Source Code for <a href="Bio.Emboss.primer3_format-module.html">Module Bio.Emboss.primer3_format</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">  1</tt>  <tt class="py-line"><tt class="py-docstring">"""Martel definitions for the output files produced by primer3.</tt> </tt>
<a name="L2"></a><tt class="py-lineno">  2</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L3"></a><tt class="py-lineno">  3</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-0" class="py-name" targets="Package Martel=Martel-module.html"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-0', 'Martel', 'link-0');">Martel</a></tt> </tt>
<a name="L4"></a><tt class="py-lineno">  4</tt>  <tt class="py-line"> </tt>
<a name="L5"></a><tt class="py-lineno">  5</tt>  <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable Bio.Emboss.primer3_format.any_space=Bio.Emboss.primer3_format-module.html#any_space"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-1', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">=</tt> <tt id="link-2" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-2', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Function Martel.Re()=Martel-module.html#Re"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-3', 'Re', 'link-3');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[ ]+"</tt><tt class="py-op">)</tt> </tt>
<a name="L6"></a><tt class="py-lineno">  6</tt>  <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable Bio.Emboss.primer3_format.blank_line=Bio.Emboss.primer3_format-module.html#blank_line,Variable Bio.Emboss.primersearch_format.blank_line=Bio.Emboss.primersearch_format-module.html#blank_line,Variable Bio.MetaTool.metatool_format.blank_line=Bio.MetaTool.metatool_format-module.html#blank_line,Variable Bio.expressions.transfac.blank_line=Bio.expressions.transfac-module.html#blank_line"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-4', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">=</tt> <tt id="link-5" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-5', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Class Martel.Expression.AnyEol=Martel.Expression.AnyEol-class.html"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-6', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L7"></a><tt class="py-lineno">  7</tt>  <tt class="py-line"> </tt>
<a name="L8"></a><tt class="py-lineno">  8</tt>  <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable Bio.Emboss.primer3_format.comment_line=Bio.Emboss.primer3_format-module.html#comment_line,Variable Bio.IntelliGenetics.intelligenetics_format.comment_line=Bio.IntelliGenetics.intelligenetics_format-module.html#comment_line,Variable Bio.NBRF.nbrf_format.comment_line=Bio.NBRF.nbrf_format-module.html#comment_line,Variable Bio.Saf.saf_format.comment_line=Bio.Saf.saf_format-module.html#comment_line"><a title="Bio.Emboss.primer3_format.comment_line
Bio.IntelliGenetics.intelligenetics_format.comment_line
Bio.NBRF.nbrf_format.comment_line
Bio.Saf.saf_format.comment_line" class="py-name" href="#" onclick="return doclink('link-7', 'comment_line', 'link-7');">comment_line</a></tt> <tt class="py-op">=</tt> <tt id="link-8" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-8', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Class Martel.Expression.Str=Martel.Expression.Str-class.html,Function Martel.Str()=Martel-module.html#Str"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-9', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"#"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-10" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-10', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Function Martel.ToEol()=Martel-module.html#ToEol"><a title="Martel.ToEol" class="py-name" href="#" onclick="return doclink('link-11', 'ToEol', 'link-11');">ToEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L9"></a><tt class="py-lineno">  9</tt>  <tt class="py-line"> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt>  <tt class="py-line"><tt class="py-comment"># comments and blank lines in the file</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt id="link-12" class="py-name" targets="Method Bio.Emboss.Primer._Primer3RecordConsumer.comments()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#comments,Variable Bio.Emboss.primer3_format.comments=Bio.Emboss.primer3_format-module.html#comments,Method Bio.Medline._RecordConsumer.comments()=Bio.Medline._RecordConsumer-class.html#comments"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.comments
Bio.Emboss.primer3_format.comments
Bio.Medline._RecordConsumer.comments" class="py-name" href="#" onclick="return doclink('link-12', 'comments', 'link-12');">comments</a></tt> <tt class="py-op">=</tt> <tt id="link-13" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-13', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Class Martel.Expression.Group=Martel.Expression.Group-class.html,Function Martel.Group()=Martel-module.html#Group"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-14', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"comments"</tt><tt class="py-op">,</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt>  <tt class="py-line">                        <tt id="link-15" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-15', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt>  <tt class="py-line">                        <tt id="link-16" class="py-name"><a title="Bio.Emboss.primer3_format.comment_line
Bio.IntelliGenetics.intelligenetics_format.comment_line
Bio.NBRF.nbrf_format.comment_line
Bio.Saf.saf_format.comment_line" class="py-name" href="#" onclick="return doclink('link-16', 'comment_line', 'link-7');">comment_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt>  <tt class="py-line">                        <tt id="link-17" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-17', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt>  <tt class="py-line">                        <tt id="link-18" class="py-name"><a title="Bio.Emboss.primer3_format.comment_line
Bio.IntelliGenetics.intelligenetics_format.comment_line
Bio.NBRF.nbrf_format.comment_line
Bio.Saf.saf_format.comment_line" class="py-name" href="#" onclick="return doclink('link-18', 'comment_line', 'link-7');">comment_line</a></tt><tt class="py-op">)</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt>  <tt class="py-line"> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt>  <tt class="py-line"><tt class="py-comment">#   1 PRODUCT SIZE: 289</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt id="link-19" class="py-name" targets="Method Bio.Emboss.Primer._Primer3RecordConsumer.product_size()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#product_size,Variable Bio.Emboss.primer3_format.product_size=Bio.Emboss.primer3_format-module.html#product_size"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.product_size
Bio.Emboss.primer3_format.product_size" class="py-name" href="#" onclick="return doclink('link-19', 'product_size', 'link-19');">product_size</a></tt> <tt class="py-op">=</tt> <tt id="link-20" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-20', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-21', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"product_size"</tt><tt class="py-op">,</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt>  <tt class="py-line">                 <tt id="link-22" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-22', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-23', 'Re', 'link-3');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt>  <tt class="py-line"><tt id="link-24" class="py-name" targets="Method Bio.Emboss.Primer._Primer3RecordConsumer.start_primer()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#start_primer,Variable Bio.Emboss.primer3_format.start_primer=Bio.Emboss.primer3_format-module.html#start_primer"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.start_primer
Bio.Emboss.primer3_format.start_primer" class="py-name" href="#" onclick="return doclink('link-24', 'start_primer', 'link-24');">start_primer</a></tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-25', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-26', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"start_primer"</tt><tt class="py-op">,</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt>  <tt class="py-line">                            <tt id="link-27" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-27', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-28" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-28', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-29', 'Re', 'link-3');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt>  <tt class="py-line">                            <tt id="link-30" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-30', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-31', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" PRODUCT SIZE: "</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt>  <tt class="py-line"><tt id="link-32" class="py-name" targets="Variable Bio.Emboss.primer3_format.primer_start_line=Bio.Emboss.primer3_format-module.html#primer_start_line"><a title="Bio.Emboss.primer3_format.primer_start_line" class="py-name" href="#" onclick="return doclink('link-32', 'primer_start_line', 'link-32');">primer_start_line</a></tt> <tt class="py-op">=</tt> <tt id="link-33" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-33', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-34', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primer_start_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt>  <tt class="py-line">                      <tt id="link-35" class="py-name"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.start_primer
Bio.Emboss.primer3_format.start_primer" class="py-name" href="#" onclick="return doclink('link-35', 'start_primer', 'link-24');">start_primer</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt>  <tt class="py-line">                      <tt id="link-36" class="py-name"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.product_size
Bio.Emboss.primer3_format.product_size" class="py-name" href="#" onclick="return doclink('link-36', 'product_size', 'link-19');">product_size</a></tt> <tt class="py-op">+</tt> <tt id="link-37" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-37', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-38', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt>  <tt class="py-line"> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt>  <tt class="py-line"><tt class="py-comment"># a blank line that signifies a new primer is coming up</tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt id="link-39" class="py-name" targets="Method Bio.Emboss.Primer._Primer3RecordConsumer.single_primer_line()=Bio.Emboss.Primer._Primer3RecordConsumer-class.html#single_primer_line,Variable Bio.Emboss.primer3_format.single_primer_line=Bio.Emboss.primer3_format-module.html#single_primer_line"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.single_primer_line
Bio.Emboss.primer3_format.single_primer_line" class="py-name" href="#" onclick="return doclink('link-39', 'single_primer_line', 'link-39');">single_primer_line</a></tt> <tt class="py-op">=</tt> <tt id="link-40" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-40', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-41', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"single_primer_line"</tt><tt class="py-op">,</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt>  <tt class="py-line">                                  <tt id="link-42" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-42', 'blank_line', 'link-4');">blank_line</a></tt><tt class="py-op">)</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt>  <tt class="py-line">                         </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt>  <tt class="py-line"><tt class="py-comment">#      FORWARD PRIMER    1725   20  59.96  55.00  AGGGAAGGGATGCTAGGTGT</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt id="link-43" class="py-name" targets="Variable Bio.Emboss.primer3_format.primer_space=Bio.Emboss.primer3_format-module.html#primer_space"><a title="Bio.Emboss.primer3_format.primer_space" class="py-name" href="#" onclick="return doclink('link-43', 'primer_space', 'link-43');">primer_space</a></tt> <tt class="py-op">=</tt> <tt id="link-44" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-44', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-45', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">" "</tt> <tt class="py-op">*</tt> <tt class="py-number">5</tt><tt class="py-op">)</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt>  <tt class="py-line"> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt>  <tt class="py-line"><tt id="link-46" class="py-name" targets="Variable Bio.Emboss.primer3_format.any_integer=Bio.Emboss.primer3_format-module.html#any_integer"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-46', 'any_integer', 'link-46');">any_integer</a></tt> <tt class="py-op">=</tt> <tt id="link-47" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-47', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-48', 'Re', 'link-3');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d]+"</tt><tt class="py-op">)</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt>  <tt class="py-line"><tt id="link-49" class="py-name" targets="Variable Bio.Emboss.primer3_format.any_float=Bio.Emboss.primer3_format-module.html#any_float"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-49', 'any_float', 'link-49');">any_float</a></tt> <tt class="py-op">=</tt> <tt id="link-50" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-50', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-51', 'Re', 'link-3');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[\d\.]+"</tt><tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt>  <tt class="py-line"><tt id="link-52" class="py-name" targets="Method Bio.AlignAce.Parser.AlignAceConsumer.sequence()=Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequence,Variable Bio.Emboss.primer3_format.sequence=Bio.Emboss.primer3_format-module.html#sequence,Method Bio.FSSP.FSSPAlignDict.sequence()=Bio.FSSP.FSSPAlignDict-class.html#sequence,Method Bio.GenBank._FeatureConsumer.sequence()=Bio.GenBank._FeatureConsumer-class.html#sequence,Method Bio.GenBank._RecordConsumer.sequence()=Bio.GenBank._RecordConsumer-class.html#sequence,Method Bio.IntelliGenetics._RecordConsumer.sequence()=Bio.IntelliGenetics._RecordConsumer-class.html#sequence,Method Bio.Rebase._RecordConsumer.sequence()=Bio.Rebase._RecordConsumer-class.html#sequence,Function Bio.Std.sequence()=Bio.Std-module.html#sequence,Module Bio.builders.SeqRecord.sequence=Bio.builders.SeqRecord.sequence-module.html,Variable Bio.expressions.fasta.sequence=Bio.expressions.fasta-module.html#sequence,Variable Bio.expressions.genbank.sequence=Bio.expressions.genbank-module.html#sequence,Variable Bio.expressions.swissprot.sprot38.sequence=Bio.expressions.swissprot.sprot38-module.html#sequence,Module Bio.formatdefs.sequence=Bio.formatdefs.sequence-module.html,Variable Bio.formatdefs.sequence.sequence=Bio.formatdefs.sequence-module.html#sequence,Variable Martel.test.test_swissprot38.sequence=Martel.test.test_swissprot38-module.html#sequence,Variable Martel.test.testformats.swissprot38.sequence=Martel.test.testformats.swissprot38-module.html#sequence"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-52', 'sequence', 'link-52');">sequence</a></tt> <tt class="py-op">=</tt> <tt id="link-53" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-53', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="Martel.Re" class="py-name" href="#" onclick="return doclink('link-54', 'Re', 'link-3');">Re</a></tt><tt class="py-op">(</tt><tt class="py-string">"[GATCN]+"</tt><tt class="py-op">)</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt>  <tt class="py-line"> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt>  <tt class="py-line"><tt id="link-55" class="py-name" targets="Variable Bio.Emboss.primer3_format.forward_primer_start=Bio.Emboss.primer3_format-module.html#forward_primer_start"><a title="Bio.Emboss.primer3_format.forward_primer_start" class="py-name" href="#" onclick="return doclink('link-55', 'forward_primer_start', 'link-55');">forward_primer_start</a></tt> <tt class="py-op">=</tt> <tt id="link-56" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-56', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-57', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_start"</tt><tt class="py-op">,</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt>  <tt class="py-line">                                   <tt id="link-58" class="py-name"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-58', 'any_integer', 'link-46');">any_integer</a></tt><tt class="py-op">)</tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt>  <tt class="py-line"><tt id="link-59" class="py-name" targets="Variable Bio.Emboss.primer3_format.forward_primer_length=Bio.Emboss.primer3_format-module.html#forward_primer_length"><a title="Bio.Emboss.primer3_format.forward_primer_length" class="py-name" href="#" onclick="return doclink('link-59', 'forward_primer_length', 'link-59');">forward_primer_length</a></tt> <tt class="py-op">=</tt> <tt id="link-60" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-60', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-61', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_length"</tt><tt class="py-op">,</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt>  <tt class="py-line">                                     <tt id="link-62" class="py-name"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-62', 'any_integer', 'link-46');">any_integer</a></tt><tt class="py-op">)</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt>  <tt class="py-line"><tt id="link-63" class="py-name" targets="Variable Bio.Emboss.primer3_format.forward_primer_tm=Bio.Emboss.primer3_format-module.html#forward_primer_tm"><a title="Bio.Emboss.primer3_format.forward_primer_tm" class="py-name" href="#" onclick="return doclink('link-63', 'forward_primer_tm', 'link-63');">forward_primer_tm</a></tt> <tt class="py-op">=</tt> <tt id="link-64" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-64', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-65', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_tm"</tt><tt class="py-op">,</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt>  <tt class="py-line">                                 <tt id="link-66" class="py-name"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-66', 'any_float', 'link-49');">any_float</a></tt><tt class="py-op">)</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt>  <tt class="py-line"><tt id="link-67" class="py-name" targets="Variable Bio.Emboss.primer3_format.forward_primer_gc=Bio.Emboss.primer3_format-module.html#forward_primer_gc"><a title="Bio.Emboss.primer3_format.forward_primer_gc" class="py-name" href="#" onclick="return doclink('link-67', 'forward_primer_gc', 'link-67');">forward_primer_gc</a></tt> <tt class="py-op">=</tt> <tt id="link-68" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-68', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-69', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_gc"</tt><tt class="py-op">,</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt>  <tt class="py-line">                                 <tt id="link-70" class="py-name"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-70', 'any_float', 'link-49');">any_float</a></tt><tt class="py-op">)</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt>  <tt class="py-line"><tt id="link-71" class="py-name" targets="Variable Bio.Emboss.primer3_format.forward_primer_seq=Bio.Emboss.primer3_format-module.html#forward_primer_seq"><a title="Bio.Emboss.primer3_format.forward_primer_seq" class="py-name" href="#" onclick="return doclink('link-71', 'forward_primer_seq', 'link-71');">forward_primer_seq</a></tt> <tt class="py-op">=</tt> <tt id="link-72" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-72', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-73', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_seq"</tt><tt class="py-op">,</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt>  <tt class="py-line">                                  <tt id="link-74" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-74', 'sequence', 'link-52');">sequence</a></tt><tt class="py-op">)</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt>  <tt class="py-line"> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt>  <tt class="py-line"><tt id="link-75" class="py-name" targets="Variable Bio.Emboss.primer3_format.forward_line=Bio.Emboss.primer3_format-module.html#forward_line"><a title="Bio.Emboss.primer3_format.forward_line" class="py-name" href="#" onclick="return doclink('link-75', 'forward_line', 'link-75');">forward_line</a></tt> <tt class="py-op">=</tt> <tt id="link-76" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-76', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-77', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"forward_line"</tt><tt class="py-op">,</tt>  </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt>  <tt class="py-line">                 <tt id="link-78" class="py-name"><a title="Bio.Emboss.primer3_format.primer_space" class="py-name" href="#" onclick="return doclink('link-78', 'primer_space', 'link-43');">primer_space</a></tt> <tt class="py-op">+</tt> <tt id="link-79" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-79', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-80', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"FORWARD PRIMER"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt>  <tt class="py-line">                 <tt id="link-81" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-81', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-82" class="py-name"><a title="Bio.Emboss.primer3_format.forward_primer_start" class="py-name" href="#" onclick="return doclink('link-82', 'forward_primer_start', 'link-55');">forward_primer_start</a></tt> <tt class="py-op">+</tt> <tt id="link-83" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-83', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt>  <tt class="py-line">                 <tt id="link-84" class="py-name"><a title="Bio.Emboss.primer3_format.forward_primer_length" class="py-name" href="#" onclick="return doclink('link-84', 'forward_primer_length', 'link-59');">forward_primer_length</a></tt> <tt class="py-op">+</tt> <tt id="link-85" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-85', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-86" class="py-name"><a title="Bio.Emboss.primer3_format.forward_primer_tm" class="py-name" href="#" onclick="return doclink('link-86', 'forward_primer_tm', 'link-63');">forward_primer_tm</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt>  <tt class="py-line">                 <tt id="link-87" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-87', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-88" class="py-name"><a title="Bio.Emboss.primer3_format.forward_primer_gc" class="py-name" href="#" onclick="return doclink('link-88', 'forward_primer_gc', 'link-67');">forward_primer_gc</a></tt> <tt class="py-op">+</tt> <tt id="link-89" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-89', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt>  </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt>  <tt class="py-line">                 <tt id="link-90" class="py-name"><a title="Bio.Emboss.primer3_format.forward_primer_seq" class="py-name" href="#" onclick="return doclink('link-90', 'forward_primer_seq', 'link-71');">forward_primer_seq</a></tt> <tt class="py-op">+</tt> <tt id="link-91" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-91', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-92', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt>  <tt class="py-line"> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt>  <tt class="py-line"><tt class="py-comment">#      REVERSE PRIMER    1994   20  59.99  55.00  AGAAGCACACCTCTCCCTGA</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt id="link-93" class="py-name" targets="Variable Bio.Emboss.primer3_format.reverse_primer_start=Bio.Emboss.primer3_format-module.html#reverse_primer_start"><a title="Bio.Emboss.primer3_format.reverse_primer_start" class="py-name" href="#" onclick="return doclink('link-93', 'reverse_primer_start', 'link-93');">reverse_primer_start</a></tt> <tt class="py-op">=</tt> <tt id="link-94" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-94', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-95', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_start"</tt><tt class="py-op">,</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt>  <tt class="py-line">                                   <tt id="link-96" class="py-name"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-96', 'any_integer', 'link-46');">any_integer</a></tt><tt class="py-op">)</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt>  <tt class="py-line"><tt id="link-97" class="py-name" targets="Variable Bio.Emboss.primer3_format.reverse_primer_length=Bio.Emboss.primer3_format-module.html#reverse_primer_length"><a title="Bio.Emboss.primer3_format.reverse_primer_length" class="py-name" href="#" onclick="return doclink('link-97', 'reverse_primer_length', 'link-97');">reverse_primer_length</a></tt> <tt class="py-op">=</tt> <tt id="link-98" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-98', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-99" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-99', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_length"</tt><tt class="py-op">,</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt>  <tt class="py-line">                                     <tt id="link-100" class="py-name"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-100', 'any_integer', 'link-46');">any_integer</a></tt><tt class="py-op">)</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt>  <tt class="py-line"><tt id="link-101" class="py-name" targets="Variable Bio.Emboss.primer3_format.reverse_primer_tm=Bio.Emboss.primer3_format-module.html#reverse_primer_tm"><a title="Bio.Emboss.primer3_format.reverse_primer_tm" class="py-name" href="#" onclick="return doclink('link-101', 'reverse_primer_tm', 'link-101');">reverse_primer_tm</a></tt> <tt class="py-op">=</tt> <tt id="link-102" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-102', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-103', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_tm"</tt><tt class="py-op">,</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt>  <tt class="py-line">                                 <tt id="link-104" class="py-name"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-104', 'any_float', 'link-49');">any_float</a></tt><tt class="py-op">)</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt>  <tt class="py-line"><tt id="link-105" class="py-name" targets="Variable Bio.Emboss.primer3_format.reverse_primer_gc=Bio.Emboss.primer3_format-module.html#reverse_primer_gc"><a title="Bio.Emboss.primer3_format.reverse_primer_gc" class="py-name" href="#" onclick="return doclink('link-105', 'reverse_primer_gc', 'link-105');">reverse_primer_gc</a></tt> <tt class="py-op">=</tt> <tt id="link-106" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-106', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-107', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_gc"</tt><tt class="py-op">,</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt>  <tt class="py-line">                                 <tt id="link-108" class="py-name"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-108', 'any_float', 'link-49');">any_float</a></tt><tt class="py-op">)</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt>  <tt class="py-line"><tt id="link-109" class="py-name" targets="Variable Bio.Emboss.primer3_format.reverse_primer_seq=Bio.Emboss.primer3_format-module.html#reverse_primer_seq"><a title="Bio.Emboss.primer3_format.reverse_primer_seq" class="py-name" href="#" onclick="return doclink('link-109', 'reverse_primer_seq', 'link-109');">reverse_primer_seq</a></tt> <tt class="py-op">=</tt> <tt id="link-110" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-110', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-111" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-111', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_seq"</tt><tt class="py-op">,</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt>  <tt class="py-line">                                  <tt id="link-112" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-112', 'sequence', 'link-52');">sequence</a></tt><tt class="py-op">)</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt>  <tt class="py-line"><tt id="link-113" class="py-name" targets="Variable Bio.Emboss.primer3_format.reverse_line=Bio.Emboss.primer3_format-module.html#reverse_line"><a title="Bio.Emboss.primer3_format.reverse_line" class="py-name" href="#" onclick="return doclink('link-113', 'reverse_line', 'link-113');">reverse_line</a></tt> <tt class="py-op">=</tt> <tt id="link-114" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-114', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-115" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-115', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"reverse_line"</tt><tt class="py-op">,</tt>  </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt>  <tt class="py-line">                 <tt id="link-116" class="py-name"><a title="Bio.Emboss.primer3_format.primer_space" class="py-name" href="#" onclick="return doclink('link-116', 'primer_space', 'link-43');">primer_space</a></tt> <tt class="py-op">+</tt> <tt id="link-117" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-117', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-118" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-118', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"REVERSE PRIMER"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt>  <tt class="py-line">                 <tt id="link-119" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-119', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-120" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_primer_start" class="py-name" href="#" onclick="return doclink('link-120', 'reverse_primer_start', 'link-93');">reverse_primer_start</a></tt> <tt class="py-op">+</tt> <tt id="link-121" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-121', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt>  <tt class="py-line">                 <tt id="link-122" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_primer_length" class="py-name" href="#" onclick="return doclink('link-122', 'reverse_primer_length', 'link-97');">reverse_primer_length</a></tt> <tt class="py-op">+</tt> <tt id="link-123" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-123', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-124" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_primer_tm" class="py-name" href="#" onclick="return doclink('link-124', 'reverse_primer_tm', 'link-101');">reverse_primer_tm</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt>  <tt class="py-line">                 <tt id="link-125" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-125', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-126" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_primer_gc" class="py-name" href="#" onclick="return doclink('link-126', 'reverse_primer_gc', 'link-105');">reverse_primer_gc</a></tt> <tt class="py-op">+</tt> <tt id="link-127" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-127', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt>  </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt>  <tt class="py-line">                 <tt id="link-128" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_primer_seq" class="py-name" href="#" onclick="return doclink('link-128', 'reverse_primer_seq', 'link-109');">reverse_primer_seq</a></tt> <tt class="py-op">+</tt> <tt id="link-129" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-129', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-130', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt>  <tt class="py-line"> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt>  <tt class="py-line"><tt class="py-comment">#     INTERNAL OLIGO     197   20  59.96  40.00  AATTGCACATAACGGATGCA</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt>  <tt class="py-line"><tt id="link-131" class="py-name" targets="Variable Bio.Emboss.primer3_format.internal_oligo_start=Bio.Emboss.primer3_format-module.html#internal_oligo_start"><a title="Bio.Emboss.primer3_format.internal_oligo_start" class="py-name" href="#" onclick="return doclink('link-131', 'internal_oligo_start', 'link-131');">internal_oligo_start</a></tt> <tt class="py-op">=</tt> <tt id="link-132" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-132', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-133" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-133', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"internal_start"</tt><tt class="py-op">,</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt>  <tt class="py-line">                                   <tt id="link-134" class="py-name"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-134', 'any_integer', 'link-46');">any_integer</a></tt><tt class="py-op">)</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt>  <tt class="py-line"><tt id="link-135" class="py-name" targets="Variable Bio.Emboss.primer3_format.internal_oligo_length=Bio.Emboss.primer3_format-module.html#internal_oligo_length"><a title="Bio.Emboss.primer3_format.internal_oligo_length" class="py-name" href="#" onclick="return doclink('link-135', 'internal_oligo_length', 'link-135');">internal_oligo_length</a></tt> <tt class="py-op">=</tt> <tt id="link-136" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-136', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-137" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-137', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"internal_length"</tt><tt class="py-op">,</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt>  <tt class="py-line">                                     <tt id="link-138" class="py-name"><a title="Bio.Emboss.primer3_format.any_integer" class="py-name" href="#" onclick="return doclink('link-138', 'any_integer', 'link-46');">any_integer</a></tt><tt class="py-op">)</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt>  <tt class="py-line"><tt id="link-139" class="py-name" targets="Variable Bio.Emboss.primer3_format.internal_oligo_tm=Bio.Emboss.primer3_format-module.html#internal_oligo_tm"><a title="Bio.Emboss.primer3_format.internal_oligo_tm" class="py-name" href="#" onclick="return doclink('link-139', 'internal_oligo_tm', 'link-139');">internal_oligo_tm</a></tt> <tt class="py-op">=</tt> <tt id="link-140" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-140', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-141" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-141', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"internal_tm"</tt><tt class="py-op">,</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt>  <tt class="py-line">                                 <tt id="link-142" class="py-name"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-142', 'any_float', 'link-49');">any_float</a></tt><tt class="py-op">)</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt>  <tt class="py-line"><tt id="link-143" class="py-name" targets="Variable Bio.Emboss.primer3_format.internal_oligo_gc=Bio.Emboss.primer3_format-module.html#internal_oligo_gc"><a title="Bio.Emboss.primer3_format.internal_oligo_gc" class="py-name" href="#" onclick="return doclink('link-143', 'internal_oligo_gc', 'link-143');">internal_oligo_gc</a></tt> <tt class="py-op">=</tt> <tt id="link-144" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-144', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-145" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-145', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"internal_gc"</tt><tt class="py-op">,</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt>  <tt class="py-line">                                 <tt id="link-146" class="py-name"><a title="Bio.Emboss.primer3_format.any_float" class="py-name" href="#" onclick="return doclink('link-146', 'any_float', 'link-49');">any_float</a></tt><tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt>  <tt class="py-line"><tt id="link-147" class="py-name" targets="Variable Bio.Emboss.primer3_format.internal_oligo_seq=Bio.Emboss.primer3_format-module.html#internal_oligo_seq"><a title="Bio.Emboss.primer3_format.internal_oligo_seq" class="py-name" href="#" onclick="return doclink('link-147', 'internal_oligo_seq', 'link-147');">internal_oligo_seq</a></tt> <tt class="py-op">=</tt> <tt id="link-148" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-148', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-149" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-149', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"internal_seq"</tt><tt class="py-op">,</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt>  <tt class="py-line">                                  <tt id="link-150" class="py-name"><a title="Bio.AlignAce.Parser.AlignAceConsumer.sequence
Bio.Emboss.primer3_format.sequence
Bio.FSSP.FSSPAlignDict.sequence
Bio.GenBank._FeatureConsumer.sequence
Bio.GenBank._RecordConsumer.sequence
Bio.IntelliGenetics._RecordConsumer.sequence
Bio.Rebase._RecordConsumer.sequence
Bio.Std.sequence
Bio.builders.SeqRecord.sequence
Bio.expressions.fasta.sequence
Bio.expressions.genbank.sequence
Bio.expressions.swissprot.sprot38.sequence
Bio.formatdefs.sequence
Bio.formatdefs.sequence.sequence
Martel.test.test_swissprot38.sequence
Martel.test.testformats.swissprot38.sequence" class="py-name" href="#" onclick="return doclink('link-150', 'sequence', 'link-52');">sequence</a></tt><tt class="py-op">)</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt>  <tt class="py-line"><tt id="link-151" class="py-name" targets="Variable Bio.Emboss.primer3_format.internal_line=Bio.Emboss.primer3_format-module.html#internal_line"><a title="Bio.Emboss.primer3_format.internal_line" class="py-name" href="#" onclick="return doclink('link-151', 'internal_line', 'link-151');">internal_line</a></tt> <tt class="py-op">=</tt> <tt id="link-152" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-152', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-153', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"internal_line"</tt><tt class="py-op">,</tt>  </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt>  <tt class="py-line">                 <tt id="link-154" class="py-name"><a title="Bio.Emboss.primer3_format.primer_space" class="py-name" href="#" onclick="return doclink('link-154', 'primer_space', 'link-43');">primer_space</a></tt> <tt class="py-op">+</tt> <tt id="link-155" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-155', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-156', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"INTERNAL OLIGO"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt>  <tt class="py-line">                 <tt id="link-157" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-157', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-158" class="py-name"><a title="Bio.Emboss.primer3_format.internal_oligo_start" class="py-name" href="#" onclick="return doclink('link-158', 'internal_oligo_start', 'link-131');">internal_oligo_start</a></tt> <tt class="py-op">+</tt> <tt id="link-159" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-159', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt>  <tt class="py-line">                 <tt id="link-160" class="py-name"><a title="Bio.Emboss.primer3_format.internal_oligo_length" class="py-name" href="#" onclick="return doclink('link-160', 'internal_oligo_length', 'link-135');">internal_oligo_length</a></tt> <tt class="py-op">+</tt> <tt id="link-161" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-161', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-162" class="py-name"><a title="Bio.Emboss.primer3_format.internal_oligo_tm" class="py-name" href="#" onclick="return doclink('link-162', 'internal_oligo_tm', 'link-139');">internal_oligo_tm</a></tt> <tt class="py-op">+</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt>  <tt class="py-line">                 <tt id="link-163" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-163', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt> <tt id="link-164" class="py-name"><a title="Bio.Emboss.primer3_format.internal_oligo_gc" class="py-name" href="#" onclick="return doclink('link-164', 'internal_oligo_gc', 'link-143');">internal_oligo_gc</a></tt> <tt class="py-op">+</tt> <tt id="link-165" class="py-name"><a title="Bio.Emboss.primer3_format.any_space" class="py-name" href="#" onclick="return doclink('link-165', 'any_space', 'link-1');">any_space</a></tt> <tt class="py-op">+</tt>  </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt>  <tt class="py-line">                 <tt id="link-166" class="py-name"><a title="Bio.Emboss.primer3_format.internal_oligo_seq" class="py-name" href="#" onclick="return doclink('link-166', 'internal_oligo_seq', 'link-147');">internal_oligo_seq</a></tt> <tt class="py-op">+</tt> <tt id="link-167" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-167', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="Martel.Expression.AnyEol" class="py-name" href="#" onclick="return doclink('link-168', 'AnyEol', 'link-6');">AnyEol</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt>  <tt class="py-line"> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt>  <tt class="py-line"> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt>  <tt class="py-line"><tt class="py-comment"># XXX This record definition is ugly. But it works :-)</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt id="link-169" class="py-name" targets="Variable Bio.Emboss.primer3_format.record=Bio.Emboss.primer3_format-module.html#record,Variable Bio.Emboss.primersearch_format.record=Bio.Emboss.primersearch_format-module.html#record,Method Bio.GFF.Feature.record()=Bio.GFF.Feature-class.html#record,Variable Bio.LocusLink.web_parse.record=Bio.LocusLink.web_parse-module.html#record,Variable Bio.Ndb.record=Bio.Ndb-module.html#record,Function Bio.Std.record()=Bio.Std-module.html#record,Variable Bio.expressions.blocks.record=Bio.expressions.blocks-module.html#record,Variable Bio.expressions.embl.embl65.record=Bio.expressions.embl.embl65-module.html#record,Variable Bio.expressions.fasta.record=Bio.expressions.fasta-module.html#record,Variable Bio.expressions.genbank.record=Bio.expressions.genbank-module.html#record,Variable Bio.expressions.hmmpfam.record=Bio.expressions.hmmpfam-module.html#record,Variable Bio.expressions.swissprot.ipi.record=Bio.expressions.swissprot.ipi-module.html#record,Variable Bio.expressions.swissprot.speclist.record=Bio.expressions.swissprot.speclist-module.html#record,Variable Bio.expressions.swissprot.sprot38.record=Bio.expressions.swissprot.sprot38-module.html#record,Variable Bio.expressions.swissprot.sprot40.record=Bio.expressions.swissprot.sprot40-module.html#record,Variable Martel.test.test_swissprot38.record=Martel.test.test_swissprot38-module.html#record,Variable Martel.test.testformats.swissprot38.record=Martel.test.testformats.swissprot38-module.html#record"><a title="Bio.Emboss.primer3_format.record
Bio.Emboss.primersearch_format.record
Bio.GFF.Feature.record
Bio.LocusLink.web_parse.record
Bio.Ndb.record
Bio.Std.record
Bio.expressions.blocks.record
Bio.expressions.embl.embl65.record
Bio.expressions.fasta.record
Bio.expressions.genbank.record
Bio.expressions.hmmpfam.record
Bio.expressions.swissprot.ipi.record
Bio.expressions.swissprot.speclist.record
Bio.expressions.swissprot.sprot38.record
Bio.expressions.swissprot.sprot40.record
Martel.test.test_swissprot38.record
Martel.test.testformats.swissprot38.record" class="py-name" href="#" onclick="return doclink('link-169', 'record', 'link-169');">record</a></tt> <tt class="py-op">=</tt> <tt id="link-170" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-170', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-171" class="py-name"><a title="Martel.Expression.Group
Martel.Group" class="py-name" href="#" onclick="return doclink('link-171', 'Group', 'link-14');">Group</a></tt><tt class="py-op">(</tt><tt class="py-string">"primer3_record"</tt><tt class="py-op">,</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt>  <tt class="py-line">                      <tt id="link-172" class="py-name"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.comments
Bio.Emboss.primer3_format.comments
Bio.Medline._RecordConsumer.comments" class="py-name" href="#" onclick="return doclink('link-172', 'comments', 'link-12');">comments</a></tt> <tt class="py-op">+</tt> \ </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt>  <tt class="py-line">                        <tt id="link-173" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-173', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-174" class="py-name" targets="Function Martel.Alt()=Martel-module.html#Alt,Class Martel.Expression.Alt=Martel.Expression.Alt-class.html"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-174', 'Alt', 'link-174');">Alt</a></tt><tt class="py-op">(</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt>  <tt class="py-line">                         <tt class="py-comment"># case 1. primer file with nothing</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt>  <tt class="py-line">                         <tt id="link-175" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-175', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-176', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"\n"</tt> <tt class="py-op">*</tt> <tt class="py-number">3</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt>  <tt class="py-line">                         <tt id="link-177" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-177', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-178" class="py-name" targets="Function Martel.Opt()=Martel-module.html#Opt"><a title="Martel.Opt" class="py-name" href="#" onclick="return doclink('link-178', 'Opt', 'link-178');">Opt</a></tt><tt class="py-op">(</tt><tt id="link-179" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-179', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-180" class="py-name"><a title="Martel.Expression.Str
Martel.Str" class="py-name" href="#" onclick="return doclink('link-180', 'Str', 'link-9');">Str</a></tt><tt class="py-op">(</tt><tt class="py-string">"\n"</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt>  <tt class="py-line">                         <tt class="py-comment"># case 2. some primers have been picked</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt>  <tt class="py-line">                         <tt id="link-181" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-181', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-182" class="py-name" targets="Package Bio.Pathway.Rep=Bio.Pathway.Rep-module.html,Function Martel.Rep()=Martel-module.html#Rep"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-182', 'Rep', 'link-182');">Rep</a></tt><tt class="py-op">(</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt>  <tt class="py-line">                           <tt class="py-comment"># case 2a. we are designing a primer pair </tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt>  <tt class="py-line">                           <tt id="link-183" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-183', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-184', 'Alt', 'link-174');">Alt</a></tt><tt class="py-op">(</tt><tt id="link-185" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-185', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">+</tt> <tt id="link-186" class="py-name"><a title="Bio.Emboss.primer3_format.primer_start_line" class="py-name" href="#" onclick="return doclink('link-186', 'primer_start_line', 'link-32');">primer_start_line</a></tt><tt class="py-op">,</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt>  <tt class="py-line">                           <tt class="py-comment"># case 2b. we are designing a single primer</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt>  <tt class="py-line">                                      <tt id="link-187" class="py-name"><a title="Bio.Emboss.Primer._Primer3RecordConsumer.single_primer_line
Bio.Emboss.primer3_format.single_primer_line" class="py-name" href="#" onclick="return doclink('link-187', 'single_primer_line', 'link-39');">single_primer_line</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt>  <tt class="py-line">                           <tt class="py-comment"># case 2a. both primer pairs</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt>  <tt class="py-line">                           <tt id="link-188" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-188', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-189" class="py-name"><a title="Martel.Alt
Martel.Expression.Alt" class="py-name" href="#" onclick="return doclink('link-189', 'Alt', 'link-174');">Alt</a></tt><tt class="py-op">(</tt><tt id="link-190" class="py-name"><a title="Bio.Emboss.primer3_format.forward_line" class="py-name" href="#" onclick="return doclink('link-190', 'forward_line', 'link-75');">forward_line</a></tt> <tt class="py-op">+</tt> <tt id="link-191" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-191', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">+</tt>  </tt>
<a name="L109"></a><tt class="py-lineno">109</tt>  <tt class="py-line">                                      <tt id="link-192" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_line" class="py-name" href="#" onclick="return doclink('link-192', 'reverse_line', 'link-113');">reverse_line</a></tt> <tt class="py-op">+</tt> <tt id="link-193" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-193', 'blank_line', 'link-4');">blank_line</a></tt><tt class="py-op">,</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt>  <tt class="py-line">                           <tt class="py-comment"># case 2b1. Reverse primer</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt>  <tt class="py-line">                                      <tt id="link-194" class="py-name"><a title="Bio.Emboss.primer3_format.reverse_line" class="py-name" href="#" onclick="return doclink('link-194', 'reverse_line', 'link-113');">reverse_line</a></tt> <tt class="py-op">+</tt> <tt id="link-195" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-195', 'blank_line', 'link-4');">blank_line</a></tt><tt class="py-op">,</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt>  <tt class="py-line">                           <tt class="py-comment"># case 2b2, Forward primer</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt>  <tt class="py-line">                                      <tt id="link-196" class="py-name"><a title="Bio.Emboss.primer3_format.forward_line" class="py-name" href="#" onclick="return doclink('link-196', 'forward_line', 'link-75');">forward_line</a></tt> <tt class="py-op">+</tt> <tt id="link-197" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-197', 'blank_line', 'link-4');">blank_line</a></tt><tt class="py-op">,</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt>  <tt class="py-line">                           <tt class="py-comment"># case 2b3, Internal oligo </tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt>  <tt class="py-line">                                      <tt id="link-198" class="py-name"><a title="Bio.Emboss.primer3_format.internal_line" class="py-name" href="#" onclick="return doclink('link-198', 'internal_line', 'link-151');">internal_line</a></tt> <tt class="py-op">+</tt> <tt id="link-199" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-199', 'blank_line', 'link-4');">blank_line</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt>  <tt class="py-line">                           <tt id="link-200" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-200', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">+</tt> <tt id="link-201" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-201', 'blank_line', 'link-4');">blank_line</a></tt> <tt class="py-op">+</tt> <tt id="link-202" class="py-name"><a title="Martel" class="py-name" href="#" onclick="return doclink('link-202', 'Martel', 'link-0');">Martel</a></tt><tt class="py-op">.</tt><tt id="link-203" class="py-name"><a title="Bio.Pathway.Rep
Martel.Rep" class="py-name" href="#" onclick="return doclink('link-203', 'Rep', 'link-182');">Rep</a></tt><tt class="py-op">(</tt><tt id="link-204" class="py-name"><a title="Bio.Emboss.primer3_format.blank_line
Bio.Emboss.primersearch_format.blank_line
Bio.MetaTool.metatool_format.blank_line
Bio.expressions.transfac.blank_line" class="py-name" href="#" onclick="return doclink('link-204', 'blank_line', 'link-4');">blank_line</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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