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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.EUtils-module.html">Package EUtils</a> ::
Module dtd2py
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<h1 class="epydoc">Source Code for <a href="Bio.EUtils.dtd2py-module.html">Module Bio.EUtils.dtd2py</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-docstring">"""</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">Internal class to convert DTDs to python form.</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">dtd2py [-m mixinmodule] [-u] <DTDfile>...</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Converts the given DTD to a python form, and stores it in the dtds package</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">directory. That directory should be writable by the user running this. </tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring">The new dtds module will have the same base name as the DTD, but with dashes and dots converted to underscores.</tt> </tt>
<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-docstring">Options:</tt> </tt>
<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-docstring"> -m <modulename> -- specify a mixin module to load. If a class in this</tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"><tt class="py-docstring"> module matches the DTD element name plus "Mixin" appended, then that class</tt> </tt>
<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"><tt class="py-docstring"> will be inherited from in the generated element class.</tt> </tt>
<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"><tt class="py-docstring"> -u -- convert all element tag names to uppercase. Otherwise, case is</tt> </tt>
<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"><tt class="py-docstring"> preserved. Some XML applications specify using uppercase, others case</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-docstring"> preserving. Some XML element names may match python keyword or builtin</tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt class="py-docstring"> names, and those DTDs should also be converted to uppercase to avoid syntax</tt> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"><tt class="py-docstring"> errors in the generated file.</tt> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> </tt>
<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt> </tt>
<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">getopt</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Bio=Bio-module.html"><a title="Bio" class="py-name" href="#" onclick="return doclink('link-0', 'Bio', 'link-0');">Bio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Package Bio.EUtils=Bio.EUtils-module.html"><a title="Bio.EUtils" class="py-name" href="#" onclick="return doclink('link-1', 'EUtils', 'link-1');">EUtils</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module Bio.EUtils.POM=Bio.EUtils.POM-module.html"><a title="Bio.EUtils.POM" class="py-name" href="#" onclick="return doclink('link-2', 'POM', 'link-2');">POM</a></tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> </tt>
<a name="compile_file"></a><div id="compile_file-def"><a name="L28"></a><tt class="py-lineno">28</tt> <a class="py-toggle" href="#" id="compile_file-toggle" onclick="return toggle('compile_file');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.EUtils.dtd2py-module.html#compile_file">compile_file</a><tt class="py-op">(</tt><tt class="py-param">dtdfile</tt><tt class="py-op">,</tt> <tt class="py-param">mixin</tt><tt class="py-op">,</tt> <tt class="py-param">toupper</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="compile_file-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="compile_file-expanded"><a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-name">outfilename</tt> <tt class="py-op">=</tt> <tt id="link-3" class="py-name"><a title="Bio.EUtils.POM" class="py-name" href="#" onclick="return doclink('link-3', 'POM', 'link-2');">POM</a></tt><tt class="py-op">.</tt><tt class="py-name">get_mod_file</tt><tt class="py-op">(</tt><tt class="py-name">dtdfile</tt><tt class="py-op">)</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"><tt class="py-comment">## try:</tt> </tt>
<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-name">outfile</tt> <tt class="py-op">=</tt> <tt id="link-4" class="py-name" targets="Function Bio.Mindy.FlatDB.open()=Bio.Mindy.FlatDB-module.html#open,Function Bio.Mindy.open()=Bio.Mindy-module.html#open"><a title="Bio.Mindy.FlatDB.open
Bio.Mindy.open" class="py-name" href="#" onclick="return doclink('link-4', 'open', 'link-4');">open</a></tt><tt class="py-op">(</tt><tt class="py-name">outfilename</tt><tt class="py-op">,</tt> <tt class="py-string">"w"</tt><tt class="py-op">)</tt> </tt>
<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-name">dtdp</tt> <tt class="py-op">=</tt> <tt id="link-5" class="py-name"><a title="Bio.EUtils.POM" class="py-name" href="#" onclick="return doclink('link-5', 'POM', 'link-2');">POM</a></tt><tt class="py-op">.</tt><tt class="py-name">get_dtd_compiler</tt><tt class="py-op">(</tt><tt class="py-name">outfile</tt><tt class="py-op">,</tt> <tt class="py-name">mixin</tt><tt class="py-op">,</tt> <tt id="link-6" class="py-name" targets="Class Bio.EUtils.DTDs.LinkOut.toupper=Bio.EUtils.DTDs.LinkOut.toupper-class.html"><a title="Bio.EUtils.DTDs.LinkOut.toupper" class="py-name" href="#" onclick="return doclink('link-6', 'toupper', 'link-6');">toupper</a></tt><tt class="py-op">)</tt> </tt>
<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-name">dtdp</tt><tt class="py-op">.</tt><tt class="py-name">parse_resource</tt><tt class="py-op">(</tt><tt class="py-name">dtdfile</tt><tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"> <tt class="py-keyword">finally</tt><tt class="py-op">:</tt> </tt>
<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method Bio.FilteredReader.FilteredReader.close()=Bio.FilteredReader.FilteredReader-class.html#close,Method Bio.Mindy.BerkeleyDB.BerkeleyDB.close()=Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html#close,Method Bio.Mindy.FlatDB.MemoryFlatDB.close()=Bio.Mindy.FlatDB.MemoryFlatDB-class.html#close,Method BioSQL.BioSeqDatabase.Adaptor.close()=BioSQL.BioSeqDatabase.Adaptor-class.html#close,Method Martel.Parser.Parser.close()=Martel.Parser.Parser-class.html#close,Method Martel.Parser.RecordParser.close()=Martel.Parser.RecordParser-class.html#close"><a title="Bio.FilteredReader.FilteredReader.close
Bio.Mindy.BerkeleyDB.BerkeleyDB.close
Bio.Mindy.FlatDB.MemoryFlatDB.close
BioSQL.BioSeqDatabase.Adaptor.close
Martel.Parser.Parser.close
Martel.Parser.RecordParser.close" class="py-name" href="#" onclick="return doclink('link-7', 'close', 'link-7');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-comment">## except:</tt> </tt>
<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## os.unlink(outfilename)</tt> </tt>
<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## print "COMPILE ERROR: while parsing:", dtdfile</tt> </tt>
<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## import traceback, pdb</tt> </tt>
<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## t, v, tb = sys.exc_info()</tt> </tt>
<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## traceback.print_exception(t, v, tb)</tt> </tt>
<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># pdb.pm()</tt> </tt>
<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="do_it"></a><div id="do_it-def"><a name="L46"></a><tt class="py-lineno">46</tt> <a class="py-toggle" href="#" id="do_it-toggle" onclick="return toggle('do_it');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.EUtils.dtd2py-module.html#do_it">do_it</a><tt class="py-op">(</tt><tt class="py-param">filelist</tt><tt class="py-op">,</tt> <tt class="py-param">mixin</tt><tt class="py-op">,</tt> <tt class="py-param">toupper</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="do_it-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="do_it-expanded"><a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">filelist</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt id="link-8" class="py-name" targets="Function Bio.EUtils.dtd2py.compile_file()=Bio.EUtils.dtd2py-module.html#compile_file"><a title="Bio.EUtils.dtd2py.compile_file" class="py-name" href="#" onclick="return doclink('link-8', 'compile_file', 'link-8');">compile_file</a></tt><tt class="py-op">(</tt><tt class="py-name">filelist</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">mixin</tt><tt class="py-op">,</tt> <tt id="link-9" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.toupper" class="py-name" href="#" onclick="return doclink('link-9', 'toupper', 'link-6');">toupper</a></tt><tt class="py-op">)</tt> </tt>
<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">dtdfile</tt> <tt class="py-keyword">in</tt> <tt class="py-name">filelist</tt><tt class="py-op">:</tt> </tt>
<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"Compiling:"</tt><tt class="py-op">,</tt> <tt class="py-name">dtdfile</tt> </tt>
<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt id="link-10" class="py-name"><a title="Bio.EUtils.dtd2py.compile_file" class="py-name" href="#" onclick="return doclink('link-10', 'compile_file', 'link-8');">compile_file</a></tt><tt class="py-op">(</tt><tt class="py-name">dtdfile</tt><tt class="py-op">,</tt> <tt class="py-name">mixin</tt><tt class="py-op">,</tt> <tt id="link-11" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.toupper" class="py-name" href="#" onclick="return doclink('link-11', 'toupper', 'link-6');">toupper</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> </tt>
<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> </tt>
<a name="main"></a><div id="main-def"><a name="L55"></a><tt class="py-lineno">55</tt> <a class="py-toggle" href="#" id="main-toggle" onclick="return toggle('main');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.EUtils.dtd2py-module.html#main">main</a><tt class="py-op">(</tt><tt class="py-param">argv</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="main-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="main-expanded"><a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">argv</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-name">mixin</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt id="link-12" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.toupper" class="py-name" href="#" onclick="return doclink('link-12', 'toupper', 'link-6');">toupper</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt class="py-name">args</tt><tt class="py-op">,</tt> <tt id="link-13" class="py-name" targets="Variable Bio.expressions.hmmpfam.files=Bio.expressions.hmmpfam-module.html#files"><a title="Bio.expressions.hmmpfam.files" class="py-name" href="#" onclick="return doclink('link-13', 'files', 'link-13');">files</a></tt> <tt class="py-op">=</tt> <tt class="py-name">getopt</tt><tt class="py-op">.</tt><tt class="py-name">getopt</tt><tt class="py-op">(</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">"m:u"</tt><tt class="py-op">)</tt> </tt>
<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">opt</tt><tt class="py-op">,</tt> <tt id="link-14" class="py-name" targets="Variable Bio.Translate.value=Bio.Translate-module.html#value"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-14', 'value', 'link-14');">value</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">args</tt><tt class="py-op">:</tt> </tt>
<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">opt</tt> <tt class="py-op">==</tt> <tt class="py-string">"-m"</tt><tt class="py-op">:</tt> </tt>
<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-name">mixin</tt> <tt class="py-op">=</tt> <tt class="py-name">__import__</tt><tt class="py-op">(</tt><tt id="link-15" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-15', 'value', 'link-14');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"Warning: could not import mixin module"</tt> </tt>
<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> <tt class="py-name">mixin</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">opt</tt> <tt class="py-op">==</tt> <tt class="py-string">"-u"</tt><tt class="py-op">:</tt> </tt>
<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt id="link-16" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.toupper" class="py-name" href="#" onclick="return doclink('link-16', 'toupper', 'link-6');">toupper</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> <tt id="link-17" class="py-name" targets="Function Bio.EUtils.dtd2py.do_it()=Bio.EUtils.dtd2py-module.html#do_it"><a title="Bio.EUtils.dtd2py.do_it" class="py-name" href="#" onclick="return doclink('link-17', 'do_it', 'link-17');">do_it</a></tt><tt class="py-op">(</tt><tt id="link-18" class="py-name"><a title="Bio.expressions.hmmpfam.files" class="py-name" href="#" onclick="return doclink('link-18', 'files', 'link-13');">files</a></tt><tt class="py-op">,</tt> <tt class="py-name">mixin</tt><tt class="py-op">,</tt> <tt id="link-19" class="py-name"><a title="Bio.EUtils.DTDs.LinkOut.toupper" class="py-name" href="#" onclick="return doclink('link-19', 'toupper', 'link-6');">toupper</a></tt><tt class="py-op">)</tt> </tt>
<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-20" class="py-name" targets="Variable Bio.PDB.AbstractPropertyMap.__doc__=Bio.PDB.AbstractPropertyMap-module.html#__doc__,Variable Bio.PDB.Atom.__doc__=Bio.PDB.Atom-module.html#__doc__,Variable Bio.PDB.Chain.__doc__=Bio.PDB.Chain-module.html#__doc__,Variable Bio.PDB.Entity.__doc__=Bio.PDB.Entity-module.html#__doc__,Variable Bio.PDB.HSExposure.__doc__=Bio.PDB.HSExposure-module.html#__doc__,Variable Bio.PDB.MMCIF2Dict.__doc__=Bio.PDB.MMCIF2Dict-module.html#__doc__,Variable Bio.PDB.MMCIFParser.__doc__=Bio.PDB.MMCIFParser-module.html#__doc__,Variable Bio.PDB.Model.__doc__=Bio.PDB.Model-module.html#__doc__,Variable Bio.PDB.NACCESS.__doc__=Bio.PDB.NACCESS-module.html#__doc__,Variable Bio.PDB.NeighborSearch.__doc__=Bio.PDB.NeighborSearch-module.html#__doc__,Variable Bio.PDB.PDBExceptions.__doc__=Bio.PDB.PDBExceptions-module.html#__doc__,Variable Bio.PDB.Polypeptide.__doc__=Bio.PDB.Polypeptide-module.html#__doc__,Variable Bio.PDB.Residue.__doc__=Bio.PDB.Residue-module.html#__doc__,Variable Bio.PDB.Selection.__doc__=Bio.PDB.Selection-module.html#__doc__,Variable Bio.PDB.Structure.__doc__=Bio.PDB.Structure-module.html#__doc__,Variable Bio.PDB.StructureBuilder.__doc__=Bio.PDB.StructureBuilder-module.html#__doc__,Variable Bio.PDB.__doc__=Bio.PDB-module.html#__doc__"><a title="Bio.PDB.AbstractPropertyMap.__doc__
Bio.PDB.Atom.__doc__
Bio.PDB.Chain.__doc__
Bio.PDB.Entity.__doc__
Bio.PDB.HSExposure.__doc__
Bio.PDB.MMCIF2Dict.__doc__
Bio.PDB.MMCIFParser.__doc__
Bio.PDB.Model.__doc__
Bio.PDB.NACCESS.__doc__
Bio.PDB.NeighborSearch.__doc__
Bio.PDB.PDBExceptions.__doc__
Bio.PDB.Polypeptide.__doc__
Bio.PDB.Residue.__doc__
Bio.PDB.Selection.__doc__
Bio.PDB.Structure.__doc__
Bio.PDB.StructureBuilder.__doc__
Bio.PDB.__doc__" class="py-name" href="#" onclick="return doclink('link-20', '__doc__', 'link-20');">__doc__</a></tt> </tt>
</div><a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> </tt>
<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"> </tt>
<a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> <tt id="link-21" class="py-name" targets="Function Bio.EUtils.dtd2py.main()=Bio.EUtils.dtd2py-module.html#main,Function Bio.Mindy.main()=Bio.Mindy-module.html#main,Function Bio.Wise.dnal.main()=Bio.Wise.dnal-module.html#main,Function Bio.Wise.main()=Bio.Wise-module.html#main,Function Bio.Wise.psw.main()=Bio.Wise.psw-module.html#main,Function Bio.biblio.main()=Bio.biblio-module.html#main,Function Bio.expressions.blast.wublast.main()=Bio.expressions.blast.wublast-module.html#main,Function Martel.test.run_tests.main()=Martel.test.run_tests-module.html#main"><a title="Bio.EUtils.dtd2py.main
Bio.Mindy.main
Bio.Wise.dnal.main
Bio.Wise.main
Bio.Wise.psw.main
Bio.biblio.main
Bio.expressions.blast.wublast.main
Martel.test.run_tests.main" class="py-name" href="#" onclick="return doclink('link-21', 'main', 'link-21');">main</a></tt><tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">)</tt> </tt>
<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> </tt><script type="text/javascript">
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