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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module POM</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.EUtils.POM-pysrc.html">source&nbsp;code</a></span></p>
<p>This module implements the XML POM -- the Python Object Model for XML.
  It is something like DOM, but more Python-ic, and easier to use. These 
  base classes are used to build POM source files which are self-validating
  python-based XML constructor objects. The major parts of the dtd2py 
  command line tool are also here.</p>

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        <a href="Bio.EUtils.POM.ValidationError-class.html" class="summary-name">ValidationError</a><br />
      ValidationError This exception is raised when an attempt is made to
        construct an XML POM tree that would be invalid.
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      <span class="summary-type">&nbsp;</span>
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      <span class="summary-type">&nbsp;</span>
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        <a href="Bio.EUtils.POM.Fragments-class.html" class="summary-name">Fragments</a><br />
      Fragments is a special holder class to hold 'loose' markup 
        fragments.
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        <a href="Bio.EUtils.POM.POMDocument-class.html" class="summary-name">POMDocument</a>
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        <a href="Bio.EUtils.POM.ObjectParserHandler-class.html" class="summary-name">ObjectParserHandler</a>
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        <a href="Bio.EUtils.POM.ContentModel-class.html" class="summary-name">ContentModel</a><br />
      Represents and validates a content model.
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        <a href="Bio.EUtils.POM._ContentModelGenerator-class.html" class="summary-name" onclick="show_private();">_ContentModelGenerator</a><br />
      _ContentModelGenerator(rawmodel) The DTD parser generated and final
        content model are so different that a different content model 
        generator is used for this object.
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        <a href="Bio.EUtils.POM.DTDConsumerForSourceGeneration-class.html" class="summary-name">DTDConsumerForSourceGeneration</a>
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          <td><span class="summary-sig"><a name="_default_parser_callback"></a><span class="summary-sig-name">_default_parser_callback</span>(<span class="summary-sig-arg">obj</span>)</span></td>
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          <td><span class="summary-sig"><a href="Bio.EUtils.POM-module.html#get_mod_file" class="summary-sig-name">get_mod_file</a>(<span class="summary-sig-arg">sourcefilename</span>)</span><br />
      Converts a file name into a file name inside the dtds package.</td>
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            <span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#get_mod_file">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="_find_element"></a><span class="summary-sig-name">_find_element</span>(<span class="summary-sig-arg">elname</span>,
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            <span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#_find_element">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="_construct_node"></a><span class="summary-sig-name">_construct_node</span>(<span class="summary-sig-arg">name</span>,
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            <span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#_construct_node">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="make_node"></a><span class="summary-sig-name">make_node</span>(<span class="summary-sig-arg">path</span>,
        <span class="summary-sig-arg">modules</span>,
        <span class="summary-sig-arg">value</span>=<span class="summary-sig-default">None</span>)</span><br />
      make_Node(path, modules, [value]) Makes a node or an XML fragment 
      given a path, element module list, and an optional value.</td>
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            <span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#make_node">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="unescape"></a><span class="summary-sig-name">unescape</span>(<span class="summary-sig-arg">s</span>)</span></td>
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            <span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#unescape">source&nbsp;code</a></span>
            
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          <td><span class="summary-sig"><a name="escape"></a><span class="summary-sig-name">escape</span>(<span class="summary-sig-arg">s</span>)</span></td>
          <td align="right" valign="top">
            <span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#escape">source&nbsp;code</a></span>
            
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<!-- ==================== VARIABLES ==================== -->
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        <a name="True"></a><span class="summary-name">True</span> = <code title="1">1</code>
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        <a name="EMPTY"></a><span class="summary-name">EMPTY</span> = <code title="None">None</code>
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        <a name="AT_CDATA"></a><span class="summary-name">AT_CDATA</span> = <code title="1">1</code>
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        <a name="AT_ID"></a><span class="summary-name">AT_ID</span> = <code title="2">2</code>
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        <a name="AT_IDREF"></a><span class="summary-name">AT_IDREF</span> = <code title="3">3</code>
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      <span class="summary-type">&nbsp;</span>
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        <a name="AT_IDREFS"></a><span class="summary-name">AT_IDREFS</span> = <code title="4">4</code>
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      <span class="summary-type">&nbsp;</span>
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        <a name="AT_ENTITY"></a><span class="summary-name">AT_ENTITY</span> = <code title="5">5</code>
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      <span class="summary-type">&nbsp;</span>
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        <a name="AT_ENTITIES"></a><span class="summary-name">AT_ENTITIES</span> = <code title="6">6</code>
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      <span class="summary-type">&nbsp;</span>
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        <a name="AT_NMTOKEN"></a><span class="summary-name">AT_NMTOKEN</span> = <code title="7">7</code>
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      <span class="summary-type">&nbsp;</span>
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        <a name="AT_NMTOKENS"></a><span class="summary-name">AT_NMTOKENS</span> = <code title="8">8</code>
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        <a name="REQUIRED"></a><span class="summary-name">REQUIRED</span> = <code title="11">11</code>
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        <a name="IMPLIED"></a><span class="summary-name">IMPLIED</span> = <code title="12">12</code>
    </td>
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      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="DEFAULT"></a><span class="summary-name">DEFAULT</span> = <code title="13">13</code>
    </td>
  </tr>
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    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a name="FIXED"></a><span class="summary-name">FIXED</span> = <code title="14">14</code>
    </td>
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    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.EUtils.POM-module.html#_ATTRTYPEMAP" class="summary-name" onclick="show_private();">_ATTRTYPEMAP</a> = <code title="{'CDATA': 1,
 'ENTITIES': 6,
 'ENTITY': 5,
 'ID': 2,
 'IDREF': 3,
 'IDREFS': 4,
 'NMTOKEN': 7,
 'NMTOKENS': 8}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">CDATA</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ENTITIES</code><code class="variable-quote">'</code><code class="variable-op">: </code>6<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ENTITY</code><code class="variable-quote">'</code><code class="variable-op">: </code>5<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ID</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-ellipsis">...</code></code>
    </td>
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    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.EUtils.POM-module.html#_ATTRCLASSMAP" class="summary-name" onclick="show_private();">_ATTRCLASSMAP</a> = <code title="{1: &lt;class 'Bio.EUtils.POM.CDATA'&gt;,
 2: &lt;class 'Bio.EUtils.POM.ID'&gt;,
 3: &lt;class 'Bio.EUtils.POM.IDREF'&gt;,
 4: &lt;class 'Bio.EUtils.POM.IDREFS'&gt;,
 5: &lt;class 'Bio.EUtils.POM.ENTITY'&gt;,
 6: &lt;class 'Bio.EUtils.POM.ENTITIES'&gt;,
 7: &lt;class 'Bio.EUtils.POM.NMTOKEN'&gt;,
 8: &lt;class 'Bio.EUtils.POM.NMTOKENS'&gt;}"><code class="variable-group">{</code>1<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.CDATA'&gt;<code class="variable-op">, </code>2<code class="variable-op">: </code>&lt;class <code class="variable-ellipsis">...</code></code>
    </td>
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    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Bio.EUtils.POM-module.html#_DEFAULTMAP" class="summary-name" onclick="show_private();">_DEFAULTMAP</a> = <code title="{u'#DEFAULT': 13, u'#FIXED': 14, u'#IMPLIED': 12, u'#REQUIRED': 11}"><code class="variable-group">{</code><code class="variable-quote">u'</code><code class="variable-string">#DEFAULT</code><code class="variable-quote">'</code><code class="variable-op">: </code>13<code class="variable-op">, </code><code class="variable-quote">u'</code><code class="variable-string">#FIXED</code><code class="variable-quote">'</code><code class="variable-op">: </code>14<code class="variable-op">, </code><code class="variable-quote">u'</code><code class="variable-string">#IMPLIED</code><code class="variable-quote">'</code><code class="variable-op">: </code>12<code class="variable-ellipsis">...</code></code>
    </td>
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<a name="get_mod_file"></a>
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       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
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  <h3 class="epydoc"><span class="sig"><span class="sig-name">get_mod_file</span>(<span class="sig-arg">sourcefilename</span>)</span>
  </h3>
  </td><td align="right" valign="top"
    ><span class="codelink"><a href="Bio.EUtils.POM-pysrc.html#get_mod_file">source&nbsp;code</a></span>&nbsp;
    </td>
  </tr></table>
  
  <p>Converts a file name into a file name inside the dtds package. This 
  file name is the destination for generated python files.</p>
  <dl class="fields">
  </dl>
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         class="privatelink" onclick="toggle_private();"
         >hide private</a>]</span></td>
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<a name="_ATTRTYPEMAP"></a>
<div class="private">
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">_ATTRTYPEMAP</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">CDATA</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">ENTITIES</code><code class="variable-quote">'</code><code class="variable-op">: </code>6<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">ENTITY</code><code class="variable-quote">'</code><code class="variable-op">: </code>5<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">ID</code><code class="variable-quote">'</code><code class="variable-op">: </code>2<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">IDREF</code><code class="variable-quote">'</code><code class="variable-op">: </code>3<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">IDREFS</code><code class="variable-quote">'</code><code class="variable-op">: </code>4<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">NMTOKEN</code><code class="variable-quote">'</code><code class="variable-op">: </code>7<code class="variable-op">,</code>
 <code class="variable-quote">'</code><code class="variable-string">NMTOKENS</code><code class="variable-quote">'</code><code class="variable-op">: </code>8<code class="variable-group">}</code>
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="_ATTRCLASSMAP"></a>
<div class="private">
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">_ATTRCLASSMAP</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code>1<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.CDATA'&gt;<code class="variable-op">,</code>
 2<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.ID'&gt;<code class="variable-op">,</code>
 3<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.IDREF'&gt;<code class="variable-op">,</code>
 4<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.IDREFS'&gt;<code class="variable-op">,</code>
 5<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.ENTITY'&gt;<code class="variable-op">,</code>
 6<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.ENTITIES'&gt;<code class="variable-op">,</code>
 7<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.NMTOKEN'&gt;<code class="variable-op">,</code>
 8<code class="variable-op">: </code>&lt;class 'Bio.EUtils.POM.NMTOKENS'&gt;<code class="variable-group">}</code>
</pre></td></tr></table>
</dd>
  </dl>
</td></tr></table>
</div>
<a name="_DEFAULTMAP"></a>
<div class="private">
<table class="details" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr><td>
  <h3 class="epydoc">_DEFAULTMAP</h3>
  
  <dl class="fields">
  </dl>
  <dl class="fields">
    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
<code class="variable-group">{</code><code class="variable-quote">u'</code><code class="variable-string">#DEFAULT</code><code class="variable-quote">'</code><code class="variable-op">: </code>13<code class="variable-op">, </code><code class="variable-quote">u'</code><code class="variable-string">#FIXED</code><code class="variable-quote">'</code><code class="variable-op">: </code>14<code class="variable-op">, </code><code class="variable-quote">u'</code><code class="variable-string">#IMPLIED</code><code class="variable-quote">'</code><code class="variable-op">: </code>12<code class="variable-op">, </code><code class="variable-quote">u'</code><code class="variable-string">#REQUIRED</code><code class="variable-quote">'</code><code class="variable-op">: </code>11<code class="variable-group">}</code>
</pre></td></tr></table>
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  </dl>
</td></tr></table>
</div>
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