<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.EUtils.Datatypes.LinkSetDb</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.EUtils-module.html">Package EUtils</a> :: <a href="Bio.EUtils.Datatypes-module.html">Module Datatypes</a> :: Class LinkSetDb </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.EUtils.Datatypes.LinkSetDb-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class LinkSetDb</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb">source code</a></span></p> <pre class="base-tree"> object --+ | <strong class="uidshort">LinkSetDb</strong> </pre> <hr /> <pre class="literalblock"> Used in eLink with cmd == neighbor Attributes are: dbto -- the links are TO this database name linkname -- the name for this set (eg, "pubmed_protein") links -- list of Links, one per matching record (includes score) List order is the sames as the XML, which is ordered from most likely to least. The identifer is from 'dbto' info -- ignored; this is only used as a warning when there is an empty list You can also use dbids -- get a DBIds of dbto and the identifiers in each Link </pre> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.EUtils.Datatypes.LinkSetDb-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">dbto</span>, <span class="summary-sig-arg">linkname</span>, <span class="summary-sig-arg">links</span>=<span class="summary-sig-default">None</span>, <span class="summary-sig-arg">info</span>=<span class="summary-sig-default">None</span>)</span><br /> x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr class="private"> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="_get_dbids"></a><span class="summary-sig-name">_get_dbids</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb._get_dbids">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__eq__"></a><span class="summary-sig-name">__eq__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb.__eq__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__ne__"></a><span class="summary-sig-name">__ne__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb.__ne__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a href="Bio.EUtils.Datatypes.LinkSetDb-class.html#__repr__" class="summary-sig-name">__repr__</a>(<span class="summary-sig-arg">self</span>)</span><br /> repr(x)</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb.__repr__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>: <code>__delattr__</code>, <code>__getattribute__</code>, <code>__hash__</code>, <code>__new__</code>, <code>__reduce__</code>, <code>__reduce_ex__</code>, <code>__setattr__</code>, <code>__str__</code> </p> </td> </tr> </table> <!-- ==================== PROPERTIES ==================== --> <a name="section-Properties"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Properties</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Properties" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a href="Bio.EUtils.Datatypes.LinkSetDb-class.html#dbids" class="summary-name">dbids</a> </td> </tr> <tr> <td colspan="2" class="summary"> <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>: <code>__class__</code> </p> </td> </tr> </table> <!-- ==================== METHOD DETAILS ==================== --> <a name="section-MethodDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Method Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-MethodDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="__init__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>, <span class="sig-arg">dbto</span>, <span class="sig-arg">linkname</span>, <span class="sig-arg">links</span>=<span class="sig-default">None</span>, <span class="sig-arg">info</span>=<span class="sig-default">None</span>)</span> <br /><em class="fname">(Constructor)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb.__init__">source code</a></span> </td> </tr></table> <p>x.__init__(...) initializes x; see x.__class__.__doc__ for signature</p> <dl class="fields"> <dt>Overrides: object.__init__ <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <a name="__repr__"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr valign="top"><td> <h3 class="epydoc"><span class="sig"><span class="sig-name">__repr__</span>(<span class="sig-arg">self</span>)</span> <br /><em class="fname">(Representation operator)</em> </h3> </td><td align="right" valign="top" ><span class="codelink"><a href="Bio.EUtils.Datatypes-pysrc.html#LinkSetDb.__repr__">source code</a></span> </td> </tr></table> <p>repr(x)</p> <dl class="fields"> <dt>Overrides: object.__repr__ <dd><em class="note">(inherited documentation)</em></dd> </dt> </dl> </td></tr></table> </div> <br /> <!-- ==================== PROPERTY DETAILS ==================== --> <a name="section-PropertyDetails"></a> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Property Details</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-PropertyDetails" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> </table> <a name="dbids"></a> <div> <table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr><td> <h3 class="epydoc">dbids</h3> <dl class="fields"> <dt>Get Method:</dt> <dd class="value"><span class="summary-sig"><a href="Bio.EUtils.Datatypes.LinkSetDb-class.html#_get_dbids" class="summary-sig-name" onclick="show_private();">_get_dbids</a>(<span class="summary-sig-arg">self</span>)</span> </dd> </dl> </td></tr></table> </div> <br /> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" 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