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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.EUtils-module.html">Package EUtils</a> ::
Module Config
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<h1 class="epydoc">Source Code for <a href="Bio.EUtils.Config-module.html">Module Bio.EUtils.Config</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-docstring">"""Configuration information about NCBI's databases"""</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"># Used to figure out if efetch supports the start, stop, strand, and</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># complexity fields</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-0" class="py-name" targets="Variable Bio.EUtils.Config.PUBLICATION_TYPE=Bio.EUtils.Config-module.html#PUBLICATION_TYPE"><a title="Bio.EUtils.Config.PUBLICATION_TYPE" class="py-name" href="#" onclick="return doclink('link-0', 'PUBLICATION_TYPE', 'link-0');">PUBLICATION_TYPE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable Bio.EUtils.Config.SEQUENCE_TYPE=Bio.EUtils.Config-module.html#SEQUENCE_TYPE"><a title="Bio.EUtils.Config.SEQUENCE_TYPE" class="py-name" href="#" onclick="return doclink('link-1', 'SEQUENCE_TYPE', 'link-1');">SEQUENCE_TYPE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-comment"># Map from database name to database type</tt> </tt>
<a name="DatabaseInfo"></a><div id="DatabaseInfo-def"><a name="L9"></a><tt class="py-lineno"> 9</tt> <a class="py-toggle" href="#" id="DatabaseInfo-toggle" onclick="return toggle('DatabaseInfo');">-</a><tt class="py-line"><tt class="py-comment"></tt><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.EUtils.Config.DatabaseInfo-class.html">DatabaseInfo</a><tt class="py-op">:</tt> </tt>
</div><div id="DatabaseInfo-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="DatabaseInfo-expanded"><a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"> <tt class="py-docstring">"""stores NCBI's name for the database and its type"""</tt> </tt>
<a name="DatabaseInfo.__init__"></a><div id="DatabaseInfo.__init__-def"><a name="L11"></a><tt class="py-lineno">11</tt> <a class="py-toggle" href="#" id="DatabaseInfo.__init__-toggle" onclick="return toggle('DatabaseInfo.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.EUtils.Config.DatabaseInfo-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">db</tt><tt class="py-op">,</tt> <tt class="py-param">dbtype</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="DatabaseInfo.__init__-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="DatabaseInfo.__init__-expanded"><a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-2" class="py-name" targets="Variable Bio.LocusLink.locus_format.db=Bio.LocusLink.locus_format-module.html#db,Variable Bio.config.DBRegistry.db=Bio.config.DBRegistry-module.html#db"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-2', 'db', 'link-2');">db</a></tt> <tt class="py-op">=</tt> <tt id="link-3" class="py-name"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-3', 'db', 'link-2');">db</a></tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">dbtype</tt> <tt class="py-op">=</tt> <tt class="py-name">dbtype</tt> </tt>
</div></div><a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> </tt>
<a name="DatabaseDict"></a><div id="DatabaseDict-def"><a name="L15"></a><tt class="py-lineno">15</tt> <a class="py-toggle" href="#" id="DatabaseDict-toggle" onclick="return toggle('DatabaseDict');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Bio.EUtils.Config.DatabaseDict-class.html">DatabaseDict</a><tt class="py-op">(</tt><tt class="py-base-class">dict</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="DatabaseDict-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="DatabaseDict-expanded"><a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-docstring">"""map from name to DatabaseInfo for that database name</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt class="py-docstring"> Entries are also available through attributes like PUBMED,</tt> </tt>
<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"><tt class="py-docstring"> OMIM, and NUCLEOTIDE.</tt> </tt>
<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="DatabaseDict.gettype"></a><div id="DatabaseDict.gettype-def"><a name="L21"></a><tt class="py-lineno">21</tt> <a class="py-toggle" href="#" id="DatabaseDict.gettype-toggle" onclick="return toggle('DatabaseDict.gettype');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.EUtils.Config.DatabaseDict-class.html#gettype">gettype</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">db</tt><tt class="py-op">,</tt> <tt class="py-param">dbtype</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="DatabaseDict.gettype-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="DatabaseDict.gettype-expanded"><a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-docstring">"""Given a database name and optional type, return the database type"""</tt> </tt>
<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">dbtype</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt id="link-4" class="py-name"><a title="Bio.EUtils.Config.SEQUENCE_TYPE" class="py-name" href="#" onclick="return doclink('link-4', 'SEQUENCE_TYPE', 'link-1');">SEQUENCE_TYPE</a></tt><tt class="py-op">,</tt> <tt id="link-5" class="py-name"><a title="Bio.EUtils.Config.PUBLICATION_TYPE" class="py-name" href="#" onclick="return doclink('link-5', 'PUBLICATION_TYPE', 'link-0');">PUBLICATION_TYPE</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">TypeError</tt><tt class="py-op">(</tt><tt class="py-string">"Unknown database type: %r"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">dbtype</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">dbtype</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt class="py-name">dbtype</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt id="link-6" class="py-name"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-6', 'db', 'link-2');">db</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">dbtype</tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">dbtype</tt> </tt>
</div></div><a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> </tt>
<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable Bio.EUtils.Config.databases=Bio.EUtils.Config-module.html#databases"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-7', 'databases', 'link-7');">databases</a></tt> <tt class="py-op">=</tt> <tt id="link-8" class="py-name" targets="Class Bio.EUtils.Config.DatabaseDict=Bio.EUtils.Config.DatabaseDict-class.html"><a title="Bio.EUtils.Config.DatabaseDict" class="py-name" href="#" onclick="return doclink('link-8', 'DatabaseDict', 'link-8');">DatabaseDict</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> </tt>
<a name="_add_db"></a><div id="_add_db-def"><a name="L31"></a><tt class="py-lineno">31</tt> <a class="py-toggle" href="#" id="_add_db-toggle" onclick="return toggle('_add_db');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.EUtils.Config-module.html#_add_db">_add_db</a><tt class="py-op">(</tt><tt class="py-param">x</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_add_db-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="_add_db-expanded"><a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-9', 'databases', 'link-7');">databases</a></tt><tt class="py-op">[</tt><tt id="link-10" class="py-name" targets="Variable Bio.MarkovModel.x=Bio.MarkovModel-module.html#x,Variable Bio.Statistics.lowess.x=Bio.Statistics.lowess-module.html#x"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-10', 'x', 'link-10');">x</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-11', 'db', 'link-2');">db</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-12" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-12', 'x', 'link-10');">x</a></tt> </tt>
<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-13" class="py-name"><a title="Bio.MarkovModel.x
Bio.Statistics.lowess.x" class="py-name" href="#" onclick="return doclink('link-13', 'x', 'link-10');">x</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="Bio.LocusLink.locus_format.db
Bio.config.DBRegistry.db" class="py-name" href="#" onclick="return doclink('link-14', 'db', 'link-2');">db</a></tt> </tt>
</div><a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> </tt>
<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"><tt class="py-comment"># XXX Try these</tt> </tt>
<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="structure">Structure</option></tt> </tt>
<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="pmc">PMC</option></tt> </tt>
<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="taxonomy">Taxonomy</option></tt> </tt>
<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="books">Books</option></tt> </tt>
<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="geo">ProbeSet</option></tt> </tt>
<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="domains">3D Domains</option></tt> </tt>
<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="UniSts">UniSTS</option></tt> </tt>
<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="cdd">Domains</option></tt> </tt>
<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="snp">SNP</option></tt> </tt>
<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># <option value="popset">PopSet</option></tt> </tt>
<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"><tt id="link-15" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-15', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">PUBMED</tt> <tt class="py-op">=</tt> <tt id="link-16" class="py-name" targets="Function Bio.EUtils.Config._add_db()=Bio.EUtils.Config-module.html#_add_db"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-16', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-17" class="py-name" targets="Class Bio.EUtils.Config.DatabaseInfo=Bio.EUtils.Config.DatabaseInfo-class.html"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-17', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"pubmed"</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"><tt id="link-18" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-18', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">OMIM</tt> <tt class="py-op">=</tt> <tt id="link-19" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-19', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-20" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-20', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"omim"</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"><tt id="link-21" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-21', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">JOURNALS</tt> <tt class="py-op">=</tt> <tt id="link-22" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-22', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-23" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-23', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"journals"</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> </tt>
<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"><tt id="link-24" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-24', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">GENOME</tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-25', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-26" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-26', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"genome"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"><tt id="link-27" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-27', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">NUCLEOTIDE</tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-28', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-29" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-29', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"nucleotide"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"><tt id="link-30" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-30', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">PROTEIN</tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-31', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-32" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-32', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"protein"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"><tt id="link-33" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-33', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">POPSET</tt> <tt class="py-op">=</tt> <tt id="link-34" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-34', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-35" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-35', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"popset"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"><tt id="link-36" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-36', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">SEQUENCES</tt> <tt class="py-op">=</tt> <tt id="link-37" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-37', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-38" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-38', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"sequences"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"><tt id="link-39" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-39', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt class="py-name">UNIGENE</tt> <tt class="py-op">=</tt> <tt id="link-40" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-40', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-41" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-41', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"unigene"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"><tt id="link-42" class="py-name"><a title="Bio.EUtils.Config.databases" class="py-name" href="#" onclick="return doclink('link-42', 'databases', 'link-7');">databases</a></tt><tt class="py-op">.</tt><tt id="link-43" class="py-name" targets="Method Bio.UniGene._RecordConsumer.GENE()=Bio.UniGene._RecordConsumer-class.html#GENE"><a title="Bio.UniGene._RecordConsumer.GENE" class="py-name" href="#" onclick="return doclink('link-43', 'GENE', 'link-43');">GENE</a></tt> <tt class="py-op">=</tt> <tt id="link-44" class="py-name"><a title="Bio.EUtils.Config._add_db" class="py-name" href="#" onclick="return doclink('link-44', '_add_db', 'link-16');">_add_db</a></tt><tt class="py-op">(</tt><tt id="link-45" class="py-name"><a title="Bio.EUtils.Config.DatabaseInfo" class="py-name" href="#" onclick="return doclink('link-45', 'DatabaseInfo', 'link-17');">DatabaseInfo</a></tt><tt class="py-op">(</tt><tt class="py-string">"gene"</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> </tt>
<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> </tt>
<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"><tt class="py-comment"># Someday I want to make it easier to get a given format. I would</tt> </tt>
<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># rather not have to specify the retmode/rettype pair, but I don't</tt> </tt>
<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># know what people want from this feature, so skip for now. Plus,</tt> </tt>
<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># it's harder than I thought.</tt> </tt>
<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"><tt class="py-comment">##class FormatInfo:</tt> </tt>
<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## def __init__(self, name, retmode):</tt> </tt>
<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## self.name = name</tt> </tt>
<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## self.retmode = retmode</tt> </tt>
<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">## self.rettype = rettype</tt> </tt>
<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt><script type="text/javascript">
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