<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.EUtils</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: Package EUtils </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.EUtils-module.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== PACKAGE DESCRIPTION ==================== --> <h1 class="epydoc">Package EUtils</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.EUtils-pysrc.html">source code</a></span></p> <p>EUtils is a client-side library for the Entrez databases at NCBI.</p> <hr /> <div class="fields"> <p><strong>Version:</strong> 1.0p1 </p> <p><strong>Author:</strong> Andrew Dalke, Dalke Scientific Software </p> </div><!-- ==================== SUBMODULES ==================== --> <a name="section-Submodules"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Submodules</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Submodules" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr><td class="summary"> <ul class="nomargin"> <li> <strong class="uidlink"><a href="Bio.EUtils.Config-module.html">Bio.EUtils.Config</a></strong>: <em class="summary">Configuration information about NCBI's databases</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a></strong>: <em class="summary">Search and retrieve information given a set of database identifiers.</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs-module.html">Bio.EUtils.DTDs</a></strong> <ul> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs.ePost_020511-module.html">Bio.EUtils.DTDs.ePost_020511</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.DTDs.eSummary_020511-module.html">Bio.EUtils.DTDs.eSummary_020511</a></strong> </li> </ul> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a></strong>: <em class="summary">various EUtils datatypes</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a></strong>: <em class="summary">Search and retreive information using the EUtils history.</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.Mixins-module.html">Bio.EUtils.Mixins</a></strong>: <em class="summary">implements functionality shared between HistoryClient and DBIdsClient</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.MultiDict-module.html">Bio.EUtils.MultiDict</a></strong>: <em class="summary">Dictionary-like objects which allow multiple keys</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a></strong>: <em class="summary">This module implements the XML POM -- the Python Object Model for XML.</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.ReseekFile-module.html">Bio.EUtils.ReseekFile</a></strong>: <em class="summary">Wrap a file handle to allow seeks back to the beginning</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.ThinClient-module.html">Bio.EUtils.ThinClient</a></strong>: <em class="summary">Low-level interface to NCBI's EUtils for Entrez search and retrieval.</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.dtd2py-module.html">Bio.EUtils.dtd2py</a></strong>: <em class="summary">Internal class to convert DTDs to python form.</em> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.setup-module.html">Bio.EUtils.setup</a></strong> </li> <li> <strong class="uidlink"><a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a></strong>: <em class="summary">This module can be used to generate python source code.</em> </li> </ul></td></tr> </table> <br /> <!-- ==================== FUNCTIONS ==================== --> <a name="section-Functions"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Functions</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Functions" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="DBIds"></a><span class="summary-sig-name">DBIds</span>(<span class="summary-sig-arg">db</span>, <span class="summary-sig-arg">ids</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.EUtils-pysrc.html#DBIds">source code</a></span> </td> </tr> </table> </td> </tr> </table> <!-- ==================== VARIABLES ==================== --> <a name="section-Variables"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Variables</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-Variables" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="PLUS_STRAND"></a><span class="summary-name">PLUS_STRAND</span> = <code title="1">1</code> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <a name="MINUS_STRAND"></a><span class="summary-name">MINUS_STRAND</span> = <code title="2">2</code> </td> </tr> </table> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table border="0" cellpadding="0" cellspacing="0" width="100%%"> <tr> <td align="left" class="footer"> Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:23 2008 </td> <td align="right" class="footer"> <a target="mainFrame" href="http://epydoc.sourceforge.net" >http://epydoc.sourceforge.net</a> </td> </tr> </table> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is 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