Sophie

Sophie

distrib > Mandriva > 2008.1 > x86_64 > by-pkgid > 763d6289e1351f2d34257ce697a3ccb7 > files > 2299

biopython-doc-1.47-2mdv2008.1.x86_64.rpm

<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>ncbiblast</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<h1 class="toc">Module ncbiblast</h1>
<hr />
  <h2 class="toc">Functions</h2>
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#Number"
     >Number</a><br />  <div class="private">
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_bit_info"
     >_bit_info</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_num_stat"
     >_num_stat</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_nv"
     >_nv</a><br />  </div>
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#float_param"
     >float_param</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#float_stat"
     >float_stat</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#int_param"
     >int_param</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#int_stat"
     >int_stat</a><br />  <h2 class="toc">Variables</h2>
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#__warningregistry__"
     >__warningregistry__</a><br />  <div class="private">
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_comma_digits"
     >_comma_digits</a><br />  </div>
    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#a_info"
     >a_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#alignment"
     >alignment</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blast_filter"
     >blast_filter</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn"
     >blastn</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_appheader"
     >blastn_appheader</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_ending"
     >blastn_ending</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_hsp_header"
     >blastn_hsp_header</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_identical"
     >blastn_identical</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp"
     >blastp</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_appheader"
     >blastp_appheader</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_ending"
     >blastp_ending</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_hsp_header"
     >blastp_hsp_header</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_identical"
     >blastp_identical</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx"
     >blastx</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx_appheader"
     >blastx_appheader</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx_ending"
     >blastx_ending</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx_hsp_header"
     >blastx_hsp_header</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#db_stats"
     >db_stats</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#expect"
     >expect</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#format"
     >format</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#frame"
     >frame</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#frameshift_info"
     >frameshift_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#gap_penalties_stats"
     >gap_penalties_stats</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#gapped_lambda_stats"
     >gapped_lambda_stats</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#generic_info1"
     >generic_info1</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#generic_info2"
     >generic_info2</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#header"
     >header</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hit"
     >hit</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hit_descr"
     >hit_descr</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hit_length"
     >hit_length</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#homology_line"
     >homology_line</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hsp"
     >hsp</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hsp_info"
     >hsp_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hsp_length"
     >hsp_length</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#lambda_stats"
     >lambda_stats</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#matrix_stats"
     >matrix_stats</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#ncbi_version"
     >ncbi_version</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#num_bits"
     >num_bits</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#num_identical"
     >num_identical</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#num_positives"
     >num_positives</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_database"
     >query_database</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_descr"
     >query_descr</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_letters"
     >query_letters</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_line"
     >query_line</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#s1_info"
     >s1_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#s2_info"
     >s2_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#score"
     >score</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#spaces_line"
     >spaces_line</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#strand"
     >strand</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#subject_line"
     >subject_line</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#t_info"
     >t_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#table"
     >table</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#table_entry"
     >table_entry</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn"
     >tblastn</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_appheader"
     >tblastn_appheader</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_ending"
     >tblastn_ending</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_hsp_header"
     >tblastn_hsp_header</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_score"
     >tblastn_score</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx"
     >tblastx</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_appheader"
     >tblastx_appheader</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_ending"
     >tblastx_ending</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_frame"
     >tblastx_frame</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_hsp_header"
     >tblastx_hsp_header</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#to_table"
     >to_table</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#ungapped_lambda_stats"
     >ungapped_lambda_stats</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#x1_info"
     >x1_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#x2_info"
     >x2_info</a><br />    <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#x3_info"
     >x3_info</a><br /><hr />
<span class="options">[<a href="javascript:void(0);" class="privatelink"
    onclick="toggle_private();">hide&nbsp;private</a>]</span>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>