<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>ncbiblast</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <h1 class="toc">Module ncbiblast</h1> <hr /> <h2 class="toc">Functions</h2> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#Number" >Number</a><br /> <div class="private"> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_bit_info" >_bit_info</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_num_stat" >_num_stat</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_nv" >_nv</a><br /> </div> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#float_param" >float_param</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#float_stat" >float_stat</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#int_param" >int_param</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#int_stat" >int_stat</a><br /> <h2 class="toc">Variables</h2> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#__warningregistry__" >__warningregistry__</a><br /> <div class="private"> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#_comma_digits" >_comma_digits</a><br /> </div> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#a_info" >a_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#alignment" >alignment</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blast_filter" >blast_filter</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn" >blastn</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_appheader" >blastn_appheader</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_ending" >blastn_ending</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_hsp_header" >blastn_hsp_header</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastn_identical" >blastn_identical</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp" >blastp</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_appheader" >blastp_appheader</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_ending" >blastp_ending</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_hsp_header" >blastp_hsp_header</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastp_identical" >blastp_identical</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx" >blastx</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx_appheader" >blastx_appheader</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx_ending" >blastx_ending</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#blastx_hsp_header" >blastx_hsp_header</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#db_stats" >db_stats</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#expect" >expect</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#format" >format</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#frame" >frame</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#frameshift_info" >frameshift_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#gap_penalties_stats" >gap_penalties_stats</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#gapped_lambda_stats" >gapped_lambda_stats</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#generic_info1" >generic_info1</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#generic_info2" >generic_info2</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#header" >header</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hit" >hit</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hit_descr" >hit_descr</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hit_length" >hit_length</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#homology_line" >homology_line</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hsp" >hsp</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hsp_info" >hsp_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#hsp_length" >hsp_length</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#lambda_stats" >lambda_stats</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#matrix_stats" >matrix_stats</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#ncbi_version" >ncbi_version</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#num_bits" >num_bits</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#num_identical" >num_identical</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#num_positives" >num_positives</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_database" >query_database</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_descr" >query_descr</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_letters" >query_letters</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#query_line" >query_line</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#s1_info" >s1_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#s2_info" >s2_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#score" >score</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#spaces_line" >spaces_line</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#strand" >strand</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#subject_line" >subject_line</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#t_info" >t_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#table" >table</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#table_entry" >table_entry</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn" >tblastn</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_appheader" >tblastn_appheader</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_ending" >tblastn_ending</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_hsp_header" >tblastn_hsp_header</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastn_score" >tblastn_score</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx" >tblastx</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_appheader" >tblastx_appheader</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_ending" >tblastx_ending</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_frame" >tblastx_frame</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#tblastx_hsp_header" >tblastx_hsp_header</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#to_table" >to_table</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#ungapped_lambda_stats" >ungapped_lambda_stats</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#x1_info" >x1_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#x2_info" >x2_info</a><br /> <a target="mainFrame" href="Bio.expressions.blast.ncbiblast-module.html#x3_info" >x3_info</a><br /><hr /> <span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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