<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>dnal</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <h1 class="toc">Module dnal</h1> <hr /> <h2 class="toc">Classes</h2> <a target="mainFrame" href="Bio.Wise.dnal.Statistics-class.html" >Statistics</a><br /> <h2 class="toc">Functions</h2> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_alb_line2coords" >_alb_line2coords</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_any" >_any</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_build_dnal_cmdline" >_build_dnal_cmdline</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_fgrep_count" >_fgrep_count</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_get_coords" >_get_coords</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_test" >_test</a><br /> </div> <a target="mainFrame" href="Bio.Wise.dnal-module.html#align" >align</a><br /> <a target="mainFrame" href="Bio.Wise.dnal-module.html#main" >main</a><br /> <h2 class="toc">Variables</h2> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_CMDLINE_DNAL" >_CMDLINE_DNAL</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_CMDLINE_FGREP_COUNT" >_CMDLINE_FGREP_COUNT</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_SCORE_GAP_EXTENSION" >_SCORE_GAP_EXTENSION</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_SCORE_GAP_START" >_SCORE_GAP_START</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_SCORE_MATCH" >_SCORE_MATCH</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_SCORE_MISMATCH" >_SCORE_MISMATCH</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Wise.dnal-module.html#_re_alb_line2coords" >_re_alb_line2coords</a><br /> </div> <hr /> <span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. So hide // them unless we have a cookie that says to show them. checkCookie(); // --> </script> </body> </html>