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<h1 class="toc">Module SubsMat</h1>
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<h2 class="toc">Classes</h2>
<a target="mainFrame" href="Bio.SubsMat.BadMatrix-class.html"
>BadMatrix</a><br /> <a target="mainFrame" href="Bio.SubsMat.SeqMat-class.html"
>SeqMat</a><br /> <h2 class="toc">Functions</h2>
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>_build_exp_freq_mat</a><br /> </div>
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>_build_log_odds_mat</a><br /> </div>
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>_build_obs_freq_mat</a><br /> </div>
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>_build_subs_mat</a><br /> </div>
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>make_log_odds_matrix</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#observed_frequency_to_substitution_matrix"
>observed_frequency_to_substitution_matrix</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#read_text_matrix"
>read_text_matrix</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#two_mat_DJS"
>two_mat_DJS</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#two_mat_relative_entropy"
>two_mat_relative_entropy</a><br /> <h2 class="toc">Variables</h2>
<a target="mainFrame" href="Bio.SubsMat-module.html#ACCREP"
>ACCREP</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#BadMatrixError"
>BadMatrixError</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#EPSILON"
>EPSILON</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#EXPFREQ"
>EXPFREQ</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#LO"
>LO</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#NOTYPE"
>NOTYPE</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#OBSFREQ"
>OBSFREQ</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#SUBS"
>SUBS</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#diagALL"
>diagALL</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#diagNO"
>diagNO</a><br /> <a target="mainFrame" href="Bio.SubsMat-module.html#diagONLY"
>diagONLY</a><br /><hr />
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