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<a href="Bio-module.html">Package Bio</a> ::
<a href="Bio.Data-module.html">Package Data</a> ::
Module IUPACData
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<h1 class="epydoc">Source Code for <a href="Bio.Data.IUPACData-module.html">Module Bio.Data.IUPACData</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># Information about the IUPAC alphabets</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable Bio.Data.IUPACData.protein_letters=Bio.Data.IUPACData-module.html#protein_letters"><a title="Bio.Data.IUPACData.protein_letters" class="py-name" href="#" onclick="return doclink('link-0', 'protein_letters', 'link-0');">protein_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-docstring">"ACDEFGHIKLMNPQRSTVWY"</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable Bio.Data.IUPACData.extended_protein_letters=Bio.Data.IUPACData-module.html#extended_protein_letters"><a title="Bio.Data.IUPACData.extended_protein_letters" class="py-name" href="#" onclick="return doclink('link-1', 'extended_protein_letters', 'link-1');">extended_protein_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"ACDEFGHIKLMNPQRSTVWYBXZ"</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_dna_letters=Bio.Data.IUPACData-module.html#ambiguous_dna_letters"><a title="Bio.Data.IUPACData.ambiguous_dna_letters" class="py-name" href="#" onclick="return doclink('link-2', 'ambiguous_dna_letters', 'link-2');">ambiguous_dna_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GATCRYWSMKHBVDN"</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_dna_letters=Bio.Data.IUPACData-module.html#unambiguous_dna_letters"><a title="Bio.Data.IUPACData.unambiguous_dna_letters" class="py-name" href="#" onclick="return doclink('link-3', 'unambiguous_dna_letters', 'link-3');">unambiguous_dna_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GATC"</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_rna_letters=Bio.Data.IUPACData-module.html#ambiguous_rna_letters"><a title="Bio.Data.IUPACData.ambiguous_rna_letters" class="py-name" href="#" onclick="return doclink('link-4', 'ambiguous_rna_letters', 'link-4');">ambiguous_rna_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GAUCRYWSMKHBVDN"</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt id="link-5" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_rna_letters=Bio.Data.IUPACData-module.html#unambiguous_rna_letters"><a title="Bio.Data.IUPACData.unambiguous_rna_letters" class="py-name" href="#" onclick="return doclink('link-5', 'unambiguous_rna_letters', 'link-5');">unambiguous_rna_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GAUC"</tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-comment"># B == 5-bromouridine</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># D == 5,6-dihydrouridine</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># S == thiouridine</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># W == wyosine</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-6" class="py-name" targets="Variable Bio.Data.IUPACData.extended_dna_letters=Bio.Data.IUPACData-module.html#extended_dna_letters"><a title="Bio.Data.IUPACData.extended_dna_letters" class="py-name" href="#" onclick="return doclink('link-6', 'extended_dna_letters', 'link-6');">extended_dna_letters</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GATCBDSW"</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-comment"># are there extended forms?</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#extended_rna_letters = "GAUCBDSW"</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_dna_values=Bio.Data.IUPACData-module.html#ambiguous_dna_values"><a title="Bio.Data.IUPACData.ambiguous_dna_values" class="py-name" href="#" onclick="return doclink('link-7', 'ambiguous_dna_values', 'link-7');">ambiguous_dna_values</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-string">"A"</tt><tt class="py-op">,</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-string">"C"</tt><tt class="py-op">,</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-string">"G"</tt><tt class="py-op">,</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-string">"T"</tt><tt class="py-op">:</tt> <tt class="py-string">"T"</tt><tt class="py-op">,</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-string">"M"</tt><tt class="py-op">:</tt> <tt class="py-string">"AC"</tt><tt class="py-op">,</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-string">"R"</tt><tt class="py-op">:</tt> <tt class="py-string">"AG"</tt><tt class="py-op">,</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-string">"W"</tt><tt class="py-op">:</tt> <tt class="py-string">"AT"</tt><tt class="py-op">,</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-string">"S"</tt><tt class="py-op">:</tt> <tt class="py-string">"CG"</tt><tt class="py-op">,</tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-string">"Y"</tt><tt class="py-op">:</tt> <tt class="py-string">"CT"</tt><tt class="py-op">,</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-string">"K"</tt><tt class="py-op">:</tt> <tt class="py-string">"GT"</tt><tt class="py-op">,</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-string">"V"</tt><tt class="py-op">:</tt> <tt class="py-string">"ACG"</tt><tt class="py-op">,</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-string">"H"</tt><tt class="py-op">:</tt> <tt class="py-string">"ACT"</tt><tt class="py-op">,</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-string">"D"</tt><tt class="py-op">:</tt> <tt class="py-string">"AGT"</tt><tt class="py-op">,</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-string">"B"</tt><tt class="py-op">:</tt> <tt class="py-string">"CGT"</tt><tt class="py-op">,</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-string">"X"</tt><tt class="py-op">:</tt> <tt class="py-string">"GATC"</tt><tt class="py-op">,</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-string">"N"</tt><tt class="py-op">:</tt> <tt class="py-string">"GATC"</tt><tt class="py-op">,</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt id="link-8" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_rna_values=Bio.Data.IUPACData-module.html#ambiguous_rna_values"><a title="Bio.Data.IUPACData.ambiguous_rna_values" class="py-name" href="#" onclick="return doclink('link-8', 'ambiguous_rna_values', 'link-8');">ambiguous_rna_values</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-string">"A"</tt><tt class="py-op">,</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-string">"C"</tt><tt class="py-op">,</tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-string">"G"</tt><tt class="py-op">,</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-string">"U"</tt><tt class="py-op">:</tt> <tt class="py-string">"U"</tt><tt class="py-op">,</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-string">"M"</tt><tt class="py-op">:</tt> <tt class="py-string">"AC"</tt><tt class="py-op">,</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-string">"R"</tt><tt class="py-op">:</tt> <tt class="py-string">"AG"</tt><tt class="py-op">,</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-string">"W"</tt><tt class="py-op">:</tt> <tt class="py-string">"AU"</tt><tt class="py-op">,</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-string">"S"</tt><tt class="py-op">:</tt> <tt class="py-string">"CG"</tt><tt class="py-op">,</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-string">"Y"</tt><tt class="py-op">:</tt> <tt class="py-string">"CU"</tt><tt class="py-op">,</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-string">"K"</tt><tt class="py-op">:</tt> <tt class="py-string">"GU"</tt><tt class="py-op">,</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-string">"V"</tt><tt class="py-op">:</tt> <tt class="py-string">"ACG"</tt><tt class="py-op">,</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-string">"H"</tt><tt class="py-op">:</tt> <tt class="py-string">"ACU"</tt><tt class="py-op">,</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-string">"D"</tt><tt class="py-op">:</tt> <tt class="py-string">"AGU"</tt><tt class="py-op">,</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-string">"B"</tt><tt class="py-op">:</tt> <tt class="py-string">"CGU"</tt><tt class="py-op">,</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-string">"X"</tt><tt class="py-op">:</tt> <tt class="py-string">"GAUC"</tt><tt class="py-op">,</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-string">"N"</tt><tt class="py-op">:</tt> <tt class="py-string">"GAUC"</tt><tt class="py-op">,</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt id="link-9" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_dna_complement=Bio.Data.IUPACData-module.html#ambiguous_dna_complement"><a title="Bio.Data.IUPACData.ambiguous_dna_complement" class="py-name" href="#" onclick="return doclink('link-9', 'ambiguous_dna_complement', 'link-9');">ambiguous_dna_complement</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-string">"T"</tt><tt class="py-op">,</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-string">"G"</tt><tt class="py-op">,</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-string">"C"</tt><tt class="py-op">,</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-string">"T"</tt><tt class="py-op">:</tt> <tt class="py-string">"A"</tt><tt class="py-op">,</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-string">"M"</tt><tt class="py-op">:</tt> <tt class="py-string">"K"</tt><tt class="py-op">,</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-string">"R"</tt><tt class="py-op">:</tt> <tt class="py-string">"Y"</tt><tt class="py-op">,</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-string">"W"</tt><tt class="py-op">:</tt> <tt class="py-string">"W"</tt><tt class="py-op">,</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-string">"S"</tt><tt class="py-op">:</tt> <tt class="py-string">"S"</tt><tt class="py-op">,</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-string">"Y"</tt><tt class="py-op">:</tt> <tt class="py-string">"R"</tt><tt class="py-op">,</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-string">"K"</tt><tt class="py-op">:</tt> <tt class="py-string">"M"</tt><tt class="py-op">,</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-string">"V"</tt><tt class="py-op">:</tt> <tt class="py-string">"B"</tt><tt class="py-op">,</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-string">"H"</tt><tt class="py-op">:</tt> <tt class="py-string">"D"</tt><tt class="py-op">,</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-string">"D"</tt><tt class="py-op">:</tt> <tt class="py-string">"H"</tt><tt class="py-op">,</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-string">"B"</tt><tt class="py-op">:</tt> <tt class="py-string">"V"</tt><tt class="py-op">,</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-string">"X"</tt><tt class="py-op">:</tt> <tt class="py-string">"X"</tt><tt class="py-op">,</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-string">"N"</tt><tt class="py-op">:</tt> <tt class="py-string">"N"</tt><tt class="py-op">,</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt id="link-10" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_rna_complement=Bio.Data.IUPACData-module.html#ambiguous_rna_complement"><a title="Bio.Data.IUPACData.ambiguous_rna_complement" class="py-name" href="#" onclick="return doclink('link-10', 'ambiguous_rna_complement', 'link-10');">ambiguous_rna_complement</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-string">"U"</tt><tt class="py-op">,</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-string">"G"</tt><tt class="py-op">,</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-string">"C"</tt><tt class="py-op">,</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-string">"U"</tt><tt class="py-op">:</tt> <tt class="py-string">"A"</tt><tt class="py-op">,</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-string">"M"</tt><tt class="py-op">:</tt> <tt class="py-string">"K"</tt><tt class="py-op">,</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-string">"R"</tt><tt class="py-op">:</tt> <tt class="py-string">"Y"</tt><tt class="py-op">,</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-string">"W"</tt><tt class="py-op">:</tt> <tt class="py-string">"W"</tt><tt class="py-op">,</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-string">"S"</tt><tt class="py-op">:</tt> <tt class="py-string">"S"</tt><tt class="py-op">,</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-string">"Y"</tt><tt class="py-op">:</tt> <tt class="py-string">"R"</tt><tt class="py-op">,</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-string">"K"</tt><tt class="py-op">:</tt> <tt class="py-string">"M"</tt><tt class="py-op">,</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-string">"V"</tt><tt class="py-op">:</tt> <tt class="py-string">"B"</tt><tt class="py-op">,</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-string">"H"</tt><tt class="py-op">:</tt> <tt class="py-string">"D"</tt><tt class="py-op">,</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-string">"D"</tt><tt class="py-op">:</tt> <tt class="py-string">"H"</tt><tt class="py-op">,</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-string">"B"</tt><tt class="py-op">:</tt> <tt class="py-string">"V"</tt><tt class="py-op">,</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-string">"X"</tt><tt class="py-op">:</tt> <tt class="py-string">"X"</tt><tt class="py-op">,</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-string">"N"</tt><tt class="py-op">:</tt> <tt class="py-string">"N"</tt><tt class="py-op">,</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> </tt>
<a name="_make_ranges"></a><div id="_make_ranges-def"><a name="L95"></a><tt class="py-lineno"> 95</tt> <a class="py-toggle" href="#" id="_make_ranges-toggle" onclick="return toggle('_make_ranges');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Data.IUPACData-module.html#_make_ranges">_make_ranges</a><tt class="py-op">(</tt><tt class="py-param">dict</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_make_ranges-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_make_ranges-expanded"><a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt id="link-11" class="py-name" targets="Variable Bio.EUtils.setup.d=Bio.EUtils.setup-module.html#d"><a title="Bio.EUtils.setup.d" class="py-name" href="#" onclick="return doclink('link-11', 'd', 'link-11');">d</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-12" class="py-name" targets="Variable Bio.Translate.key=Bio.Translate-module.html#key"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-12', 'key', 'link-12');">key</a></tt><tt class="py-op">,</tt> <tt id="link-13" class="py-name" targets="Variable Bio.Translate.value=Bio.Translate-module.html#value"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-13', 'value', 'link-13');">value</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method Bio.Crystal.Crystal.items()=Bio.Crystal.Crystal-class.html#items,Method Bio.EUtils.MultiDict._BaseMultiDict.items()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#items,Variable Bio.Entrez.SerialSet.items=Bio.Entrez.SerialSet-module.html#items,Method Bio.GenBank.NCBIDictionary.items()=Bio.GenBank.NCBIDictionary-class.html#items,Method Bio.Mindy.BaseDB.DictLookup.items()=Bio.Mindy.BaseDB.DictLookup-class.html#items,Method Bio.Prosite.ExPASyDictionary.items()=Bio.Prosite.ExPASyDictionary-class.html#items,Method Bio.Prosite.Prodoc.ExPASyDictionary.items()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#items,Method Bio.PubMed.Dictionary.items()=Bio.PubMed.Dictionary-class.html#items,Method Bio.SwissProt.SProt.ExPASyDictionary.items()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#items,Method Bio.config.Registry.Registry.items()=Bio.config.Registry.Registry-class.html#items,Function Bio.listfns.items()=Bio.listfns-module.html#items,Method BioSQL.BioSeqDatabase.BioSeqDatabase.items()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#items,Method BioSQL.BioSeqDatabase.DBServer.items()=BioSQL.BioSeqDatabase.DBServer-class.html#items,Method Martel.Parser.MartelAttributeList.items()=Martel.Parser.MartelAttributeList-class.html#items"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-14', 'items', 'link-14');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt id="link-15" class="py-name"><a title="Bio.EUtils.setup.d" class="py-name" href="#" onclick="return doclink('link-15', 'd', 'link-11');">d</a></tt><tt class="py-op">[</tt><tt id="link-16" class="py-name"><a title="Bio.Translate.key" class="py-name" href="#" onclick="return doclink('link-16', 'key', 'link-12');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt id="link-17" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-17', 'value', 'link-13');">value</a></tt><tt class="py-op">,</tt> <tt id="link-18" class="py-name"><a title="Bio.Translate.value" class="py-name" href="#" onclick="return doclink('link-18', 'value', 'link-13');">value</a></tt><tt class="py-op">)</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-19" class="py-name"><a title="Bio.EUtils.setup.d" class="py-name" href="#" onclick="return doclink('link-19', 'd', 'link-11');">d</a></tt> </tt>
</div><a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"><tt class="py-comment"># From bioperl's SeqStats.pm</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt class="py-comment"></tt><tt id="link-20" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_dna_weights=Bio.Data.IUPACData-module.html#unambiguous_dna_weights"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-20', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-number">347.</tt><tt class="py-op">,</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-number">323.</tt><tt class="py-op">,</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-number">363.</tt><tt class="py-op">,</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-string">"T"</tt><tt class="py-op">:</tt> <tt class="py-number">322.</tt><tt class="py-op">,</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"><tt id="link-21" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_dna_weight_ranges=Bio.Data.IUPACData-module.html#unambiguous_dna_weight_ranges"><a title="Bio.Data.IUPACData.unambiguous_dna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-21', 'unambiguous_dna_weight_ranges', 'link-21');">unambiguous_dna_weight_ranges</a></tt> <tt class="py-op">=</tt> <tt id="link-22" class="py-name" targets="Function Bio.Data.IUPACData._make_ranges()=Bio.Data.IUPACData-module.html#_make_ranges"><a title="Bio.Data.IUPACData._make_ranges" class="py-name" href="#" onclick="return doclink('link-22', '_make_ranges', 'link-22');">_make_ranges</a></tt><tt class="py-op">(</tt><tt id="link-23" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-23', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt><tt class="py-op">)</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"><tt id="link-24" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_rna_weights=Bio.Data.IUPACData-module.html#unambiguous_rna_weights"><a title="Bio.Data.IUPACData.unambiguous_rna_weights" class="py-name" href="#" onclick="return doclink('link-24', 'unambiguous_rna_weights', 'link-24');">unambiguous_rna_weights</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt id="link-25" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-25', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt><tt class="py-op">[</tt><tt class="py-string">"A"</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-number">16.</tt><tt class="py-op">,</tt> <tt class="py-comment"># 16 for the oxygen</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt id="link-26" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-26', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt><tt class="py-op">[</tt><tt class="py-string">"C"</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-number">16.</tt><tt class="py-op">,</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt id="link-27" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-27', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt><tt class="py-op">[</tt><tt class="py-string">"G"</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-number">16.</tt><tt class="py-op">,</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-string">"U"</tt><tt class="py-op">:</tt> <tt class="py-number">340.</tt><tt class="py-op">,</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-op">}</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt id="link-28" class="py-name" targets="Variable Bio.Data.IUPACData.unambiguous_rna_weight_ranges=Bio.Data.IUPACData-module.html#unambiguous_rna_weight_ranges"><a title="Bio.Data.IUPACData.unambiguous_rna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-28', 'unambiguous_rna_weight_ranges', 'link-28');">unambiguous_rna_weight_ranges</a></tt> <tt class="py-op">=</tt> <tt id="link-29" class="py-name"><a title="Bio.Data.IUPACData._make_ranges" class="py-name" href="#" onclick="return doclink('link-29', '_make_ranges', 'link-22');">_make_ranges</a></tt><tt class="py-op">(</tt><tt id="link-30" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_rna_weights" class="py-name" href="#" onclick="return doclink('link-30', 'unambiguous_rna_weights', 'link-24');">unambiguous_rna_weights</a></tt><tt class="py-op">)</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> </tt>
<a name="_make_ambiguous_ranges"></a><div id="_make_ambiguous_ranges-def"><a name="L118"></a><tt class="py-lineno">118</tt> <a class="py-toggle" href="#" id="_make_ambiguous_ranges-toggle" onclick="return toggle('_make_ambiguous_ranges');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Bio.Data.IUPACData-module.html#_make_ambiguous_ranges">_make_ambiguous_ranges</a><tt class="py-op">(</tt><tt class="py-param">dict</tt><tt class="py-op">,</tt> <tt class="py-param">weight_table</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_make_ambiguous_ranges-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_make_ambiguous_ranges-expanded"><a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">range_d</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">avg_d</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">letter</tt><tt class="py-op">,</tt> <tt id="link-31" class="py-name" targets="Method Bio.Crystal.Crystal.values()=Bio.Crystal.Crystal-class.html#values,Method Bio.EUtils.MultiDict._BaseMultiDict.values()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#values,Method Bio.GenBank.NCBIDictionary.values()=Bio.GenBank.NCBIDictionary-class.html#values,Method Bio.Mindy.BaseDB.DictLookup.values()=Bio.Mindy.BaseDB.DictLookup-class.html#values,Method Bio.Prosite.ExPASyDictionary.values()=Bio.Prosite.ExPASyDictionary-class.html#values,Method Bio.Prosite.Prodoc.ExPASyDictionary.values()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#values,Method Bio.PubMed.Dictionary.values()=Bio.PubMed.Dictionary-class.html#values,Method Bio.SwissProt.SProt.ExPASyDictionary.values()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#values,Method Bio.config.Registry.Registry.values()=Bio.config.Registry.Registry-class.html#values,Method BioSQL.BioSeqDatabase.BioSeqDatabase.values()=BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#values,Method BioSQL.BioSeqDatabase.DBServer.values()=BioSQL.BioSeqDatabase.DBServer-class.html#values,Method Martel.Parser.MartelAttributeList.values()=Martel.Parser.MartelAttributeList-class.html#values"><a title="Bio.Crystal.Crystal.values
Bio.EUtils.MultiDict._BaseMultiDict.values
Bio.GenBank.NCBIDictionary.values
Bio.Mindy.BaseDB.DictLookup.values
Bio.Prosite.ExPASyDictionary.values
Bio.Prosite.Prodoc.ExPASyDictionary.values
Bio.PubMed.Dictionary.values
Bio.SwissProt.SProt.ExPASyDictionary.values
Bio.config.Registry.Registry.values
BioSQL.BioSeqDatabase.BioSeqDatabase.values
BioSQL.BioSeqDatabase.DBServer.values
Martel.Parser.MartelAttributeList.values" class="py-name" href="#" onclick="return doclink('link-31', 'values', 'link-31');">values</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="Bio.Crystal.Crystal.items
Bio.EUtils.MultiDict._BaseMultiDict.items
Bio.Entrez.SerialSet.items
Bio.GenBank.NCBIDictionary.items
Bio.Mindy.BaseDB.DictLookup.items
Bio.Prosite.ExPASyDictionary.items
Bio.Prosite.Prodoc.ExPASyDictionary.items
Bio.PubMed.Dictionary.items
Bio.SwissProt.SProt.ExPASyDictionary.items
Bio.config.Registry.Registry.items
Bio.listfns.items
BioSQL.BioSeqDatabase.BioSeqDatabase.items
BioSQL.BioSeqDatabase.DBServer.items
Martel.Parser.MartelAttributeList.items" class="py-name" href="#" onclick="return doclink('link-32', 'items', 'link-14');">items</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">weights</tt> <tt class="py-op">=</tt> <tt id="link-33" class="py-name" targets="Method Bio.GFF.FeatureAggregate.map()=Bio.GFF.FeatureAggregate-class.html#map"><a title="Bio.GFF.FeatureAggregate.map" class="py-name" href="#" onclick="return doclink('link-33', 'map', 'link-33');">map</a></tt><tt class="py-op">(</tt><tt class="py-name">weight_table</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method Bio.Crystal.Crystal.get()=Bio.Crystal.Crystal-class.html#get,Method Bio.Data.CodonTable.AmbiguousForwardTable.get()=Bio.Data.CodonTable.AmbiguousForwardTable-class.html#get,Method Bio.EUtils.MultiDict._BaseMultiDict.get()=Bio.EUtils.MultiDict._BaseMultiDict-class.html#get,Method Bio.EUtils.POM.ElementNode.get()=Bio.EUtils.POM.ElementNode-class.html#get,Method Bio.GenBank.NCBIDictionary.get()=Bio.GenBank.NCBIDictionary-class.html#get,Method Bio.Mindy.BaseDB.DictLookup.get()=Bio.Mindy.BaseDB.DictLookup-class.html#get,Method Bio.Prosite.ExPASyDictionary.get()=Bio.Prosite.ExPASyDictionary-class.html#get,Method Bio.Prosite.Prodoc.ExPASyDictionary.get()=Bio.Prosite.Prodoc.ExPASyDictionary-class.html#get,Method Bio.PubMed.Dictionary.get()=Bio.PubMed.Dictionary-class.html#get,Method Bio.Restriction.Restriction.RestrictionBatch.get()=Bio.Restriction.Restriction.RestrictionBatch-class.html#get,Method Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.get()=Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#get,Method Bio.SeqUtils.MissingTable.get()=Bio.SeqUtils.MissingTable-class.html#get,Method Bio.SwissProt.SProt.ExPASyDictionary.get()=Bio.SwissProt.SProt.ExPASyDictionary-class.html#get,Method Bio.config.DBRegistry.DBGroup.get()=Bio.config.DBRegistry.DBGroup-class.html#get,Method Bio.config.DBRegistry.DBObject.get()=Bio.config.DBRegistry.DBObject-class.html#get,Method Bio.config.Registry.Registry.get()=Bio.config.Registry.Registry-class.html#get,Method Martel.Parser.MartelAttributeList.get()=Martel.Parser.MartelAttributeList-class.html#get,Method Martel.msre_parse.Tokenizer.get()=Martel.msre_parse.Tokenizer-class.html#get"><a title="Bio.Crystal.Crystal.get
Bio.Data.CodonTable.AmbiguousForwardTable.get
Bio.EUtils.MultiDict._BaseMultiDict.get
Bio.EUtils.POM.ElementNode.get
Bio.GenBank.NCBIDictionary.get
Bio.Mindy.BaseDB.DictLookup.get
Bio.Prosite.ExPASyDictionary.get
Bio.Prosite.Prodoc.ExPASyDictionary.get
Bio.PubMed.Dictionary.get
Bio.Restriction.Restriction.RestrictionBatch.get
Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder.get
Bio.SeqUtils.MissingTable.get
Bio.SwissProt.SProt.ExPASyDictionary.get
Bio.config.DBRegistry.DBGroup.get
Bio.config.DBRegistry.DBObject.get
Bio.config.Registry.Registry.get
Martel.Parser.MartelAttributeList.get
Martel.msre_parse.Tokenizer.get" class="py-name" href="#" onclick="return doclink('link-34', 'get', 'link-34');">get</a></tt><tt class="py-op">,</tt> <tt id="link-35" class="py-name"><a title="Bio.Crystal.Crystal.values
Bio.EUtils.MultiDict._BaseMultiDict.values
Bio.GenBank.NCBIDictionary.values
Bio.Mindy.BaseDB.DictLookup.values
Bio.Prosite.ExPASyDictionary.values
Bio.Prosite.Prodoc.ExPASyDictionary.values
Bio.PubMed.Dictionary.values
Bio.SwissProt.SProt.ExPASyDictionary.values
Bio.config.Registry.Registry.values
BioSQL.BioSeqDatabase.BioSeqDatabase.values
BioSQL.BioSeqDatabase.DBServer.values
Martel.Parser.MartelAttributeList.values" class="py-name" href="#" onclick="return doclink('link-35', 'values', 'link-31');">values</a></tt><tt class="py-op">)</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">range_d</tt><tt class="py-op">[</tt><tt class="py-name">letter</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">min</tt><tt class="py-op">(</tt><tt class="py-name">weights</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">max</tt><tt class="py-op">(</tt><tt class="py-name">weights</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-name">total_w</tt> <tt class="py-op">=</tt> <tt class="py-number">0.0</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">w</tt> <tt class="py-keyword">in</tt> <tt class="py-name">weights</tt><tt class="py-op">:</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-name">total_w</tt> <tt class="py-op">=</tt> <tt class="py-name">total_w</tt> <tt class="py-op">+</tt> <tt class="py-name">w</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-name">avg_d</tt><tt class="py-op">[</tt><tt class="py-name">letter</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">total_w</tt> <tt class="py-op">/</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">weights</tt><tt class="py-op">)</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">range_d</tt><tt class="py-op">,</tt> <tt class="py-name">avg_d</tt> </tt>
</div><a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"><tt id="link-36" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_dna_weight_ranges=Bio.Data.IUPACData-module.html#ambiguous_dna_weight_ranges"><a title="Bio.Data.IUPACData.ambiguous_dna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-36', 'ambiguous_dna_weight_ranges', 'link-36');">ambiguous_dna_weight_ranges</a></tt><tt class="py-op">,</tt> <tt id="link-37" class="py-name" targets="Variable Bio.Data.IUPACData.avg_ambiguous_dna_weights=Bio.Data.IUPACData-module.html#avg_ambiguous_dna_weights"><a title="Bio.Data.IUPACData.avg_ambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-37', 'avg_ambiguous_dna_weights', 'link-37');">avg_ambiguous_dna_weights</a></tt> <tt class="py-op">=</tt> \ </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt id="link-38" class="py-name" targets="Function Bio.Data.IUPACData._make_ambiguous_ranges()=Bio.Data.IUPACData-module.html#_make_ambiguous_ranges"><a title="Bio.Data.IUPACData._make_ambiguous_ranges" class="py-name" href="#" onclick="return doclink('link-38', '_make_ambiguous_ranges', 'link-38');">_make_ambiguous_ranges</a></tt><tt class="py-op">(</tt><tt id="link-39" class="py-name"><a title="Bio.Data.IUPACData.ambiguous_dna_values" class="py-name" href="#" onclick="return doclink('link-39', 'ambiguous_dna_values', 'link-7');">ambiguous_dna_values</a></tt><tt class="py-op">,</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt id="link-40" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_dna_weights" class="py-name" href="#" onclick="return doclink('link-40', 'unambiguous_dna_weights', 'link-20');">unambiguous_dna_weights</a></tt><tt class="py-op">)</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt id="link-41" class="py-name" targets="Variable Bio.Data.IUPACData.ambiguous_rna_weight_ranges=Bio.Data.IUPACData-module.html#ambiguous_rna_weight_ranges"><a title="Bio.Data.IUPACData.ambiguous_rna_weight_ranges" class="py-name" href="#" onclick="return doclink('link-41', 'ambiguous_rna_weight_ranges', 'link-41');">ambiguous_rna_weight_ranges</a></tt><tt class="py-op">,</tt> <tt id="link-42" class="py-name" targets="Variable Bio.Data.IUPACData.avg_ambiguous_rna_weights=Bio.Data.IUPACData-module.html#avg_ambiguous_rna_weights"><a title="Bio.Data.IUPACData.avg_ambiguous_rna_weights" class="py-name" href="#" onclick="return doclink('link-42', 'avg_ambiguous_rna_weights', 'link-42');">avg_ambiguous_rna_weights</a></tt> <tt class="py-op">=</tt> \ </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="Bio.Data.IUPACData._make_ambiguous_ranges" class="py-name" href="#" onclick="return doclink('link-43', '_make_ambiguous_ranges', 'link-38');">_make_ambiguous_ranges</a></tt><tt class="py-op">(</tt><tt id="link-44" class="py-name"><a title="Bio.Data.IUPACData.ambiguous_rna_values" class="py-name" href="#" onclick="return doclink('link-44', 'ambiguous_rna_values', 'link-8');">ambiguous_rna_values</a></tt><tt class="py-op">,</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt id="link-45" class="py-name"><a title="Bio.Data.IUPACData.unambiguous_rna_weights" class="py-name" href="#" onclick="return doclink('link-45', 'unambiguous_rna_weights', 'link-24');">unambiguous_rna_weights</a></tt><tt class="py-op">)</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt id="link-46" class="py-name" targets="Variable Bio.Data.IUPACData.protein_weights=Bio.Data.IUPACData-module.html#protein_weights"><a title="Bio.Data.IUPACData.protein_weights" class="py-name" href="#" onclick="return doclink('link-46', 'protein_weights', 'link-46');">protein_weights</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-number">89.09</tt><tt class="py-op">,</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-number">121.16</tt><tt class="py-op">,</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-string">"D"</tt><tt class="py-op">:</tt> <tt class="py-number">133.10</tt><tt class="py-op">,</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-string">"E"</tt><tt class="py-op">:</tt> <tt class="py-number">147.13</tt><tt class="py-op">,</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-string">"F"</tt><tt class="py-op">:</tt> <tt class="py-number">165.19</tt><tt class="py-op">,</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-number">75.07</tt><tt class="py-op">,</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-string">"H"</tt><tt class="py-op">:</tt> <tt class="py-number">155.16</tt><tt class="py-op">,</tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-string">"I"</tt><tt class="py-op">:</tt> <tt class="py-number">131.18</tt><tt class="py-op">,</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-string">"K"</tt><tt class="py-op">:</tt> <tt class="py-number">146.19</tt><tt class="py-op">,</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-string">"L"</tt><tt class="py-op">:</tt> <tt class="py-number">131.18</tt><tt class="py-op">,</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-string">"M"</tt><tt class="py-op">:</tt> <tt class="py-number">149.21</tt><tt class="py-op">,</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-string">"N"</tt><tt class="py-op">:</tt> <tt class="py-number">132.12</tt><tt class="py-op">,</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-string">"P"</tt><tt class="py-op">:</tt> <tt class="py-number">115.13</tt><tt class="py-op">,</tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-string">"Q"</tt><tt class="py-op">:</tt> <tt class="py-number">146.15</tt><tt class="py-op">,</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-string">"R"</tt><tt class="py-op">:</tt> <tt class="py-number">174.20</tt><tt class="py-op">,</tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-string">"S"</tt><tt class="py-op">:</tt> <tt class="py-number">105.09</tt><tt class="py-op">,</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-string">"T"</tt><tt class="py-op">:</tt> <tt class="py-number">119.12</tt><tt class="py-op">,</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-string">"V"</tt><tt class="py-op">:</tt> <tt class="py-number">117.15</tt><tt class="py-op">,</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-string">"W"</tt><tt class="py-op">:</tt> <tt class="py-number">204.23</tt><tt class="py-op">,</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-string">"Y"</tt><tt class="py-op">:</tt> <tt class="py-number">181.19</tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"><tt id="link-47" class="py-name" targets="Variable Bio.Data.IUPACData.extended_protein_values=Bio.Data.IUPACData-module.html#extended_protein_values"><a title="Bio.Data.IUPACData.extended_protein_values" class="py-name" href="#" onclick="return doclink('link-47', 'extended_protein_values', 'link-47');">extended_protein_values</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-string">"A"</tt><tt class="py-op">:</tt> <tt class="py-string">"A"</tt><tt class="py-op">,</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-string">"B"</tt><tt class="py-op">:</tt> <tt class="py-string">"ND"</tt><tt class="py-op">,</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-string">"C"</tt><tt class="py-op">:</tt> <tt class="py-string">"C"</tt><tt class="py-op">,</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-string">"D"</tt><tt class="py-op">:</tt> <tt class="py-string">"D"</tt><tt class="py-op">,</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-string">"E"</tt><tt class="py-op">:</tt> <tt class="py-string">"E"</tt><tt class="py-op">,</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-string">"F"</tt><tt class="py-op">:</tt> <tt class="py-string">"F"</tt><tt class="py-op">,</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-string">"G"</tt><tt class="py-op">:</tt> <tt class="py-string">"G"</tt><tt class="py-op">,</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-string">"H"</tt><tt class="py-op">:</tt> <tt class="py-string">"H"</tt><tt class="py-op">,</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-string">"I"</tt><tt class="py-op">:</tt> <tt class="py-string">"I"</tt><tt class="py-op">,</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-string">"K"</tt><tt class="py-op">:</tt> <tt class="py-string">"K"</tt><tt class="py-op">,</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-string">"L"</tt><tt class="py-op">:</tt> <tt class="py-string">"L"</tt><tt class="py-op">,</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-string">"M"</tt><tt class="py-op">:</tt> <tt class="py-string">"M"</tt><tt class="py-op">,</tt> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-string">"N"</tt><tt class="py-op">:</tt> <tt class="py-string">"N"</tt><tt class="py-op">,</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-string">"P"</tt><tt class="py-op">:</tt> <tt class="py-string">"P"</tt><tt class="py-op">,</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-string">"Q"</tt><tt class="py-op">:</tt> <tt class="py-string">"Q"</tt><tt class="py-op">,</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-string">"R"</tt><tt class="py-op">:</tt> <tt class="py-string">"R"</tt><tt class="py-op">,</tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-string">"S"</tt><tt class="py-op">:</tt> <tt class="py-string">"S"</tt><tt class="py-op">,</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-string">"T"</tt><tt class="py-op">:</tt> <tt class="py-string">"T"</tt><tt class="py-op">,</tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-string">"V"</tt><tt class="py-op">:</tt> <tt class="py-string">"V"</tt><tt class="py-op">,</tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-string">"W"</tt><tt class="py-op">:</tt> <tt class="py-string">"W"</tt><tt class="py-op">,</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-string">"X"</tt><tt class="py-op">:</tt> <tt class="py-string">"ACDEFGHIKLMNPQRSTVWY"</tt><tt class="py-op">,</tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-string">"Y"</tt><tt class="py-op">:</tt> <tt class="py-string">"Y"</tt><tt class="py-op">,</tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-string">"Z"</tt><tt class="py-op">:</tt> <tt class="py-string">"QE"</tt><tt class="py-op">,</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"><tt class="py-op">}</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"><tt id="link-48" class="py-name" targets="Variable Bio.Data.IUPACData.protein_weight_ranges=Bio.Data.IUPACData-module.html#protein_weight_ranges"><a title="Bio.Data.IUPACData.protein_weight_ranges" class="py-name" href="#" onclick="return doclink('link-48', 'protein_weight_ranges', 'link-48');">protein_weight_ranges</a></tt> <tt class="py-op">=</tt> <tt id="link-49" class="py-name"><a title="Bio.Data.IUPACData._make_ranges" class="py-name" href="#" onclick="return doclink('link-49', '_make_ranges', 'link-22');">_make_ranges</a></tt><tt class="py-op">(</tt><tt id="link-50" class="py-name"><a title="Bio.Data.IUPACData.protein_weights" class="py-name" href="#" onclick="return doclink('link-50', 'protein_weights', 'link-46');">protein_weights</a></tt><tt class="py-op">)</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"><tt id="link-51" class="py-name" targets="Variable Bio.Data.IUPACData.extended_protein_weight_ranges=Bio.Data.IUPACData-module.html#extended_protein_weight_ranges"><a title="Bio.Data.IUPACData.extended_protein_weight_ranges" class="py-name" href="#" onclick="return doclink('link-51', 'extended_protein_weight_ranges', 'link-51');">extended_protein_weight_ranges</a></tt><tt class="py-op">,</tt> <tt id="link-52" class="py-name" targets="Variable Bio.Data.IUPACData.avg_extended_protein_weights=Bio.Data.IUPACData-module.html#avg_extended_protein_weights"><a title="Bio.Data.IUPACData.avg_extended_protein_weights" class="py-name" href="#" onclick="return doclink('link-52', 'avg_extended_protein_weights', 'link-52');">avg_extended_protein_weights</a></tt> <tt class="py-op">=</tt> \ </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt id="link-53" class="py-name"><a title="Bio.Data.IUPACData._make_ambiguous_ranges" class="py-name" href="#" onclick="return doclink('link-53', '_make_ambiguous_ranges', 'link-38');">_make_ambiguous_ranges</a></tt><tt class="py-op">(</tt><tt id="link-54" class="py-name"><a title="Bio.Data.IUPACData.extended_protein_values" class="py-name" href="#" onclick="return doclink('link-54', 'extended_protein_values', 'link-47');">extended_protein_values</a></tt><tt class="py-op">,</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt id="link-55" class="py-name"><a title="Bio.Data.IUPACData.protein_weights" class="py-name" href="#" onclick="return doclink('link-55', 'protein_weights', 'link-46');">protein_weights</a></tt><tt class="py-op">)</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> </tt><script type="text/javascript">
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