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<h1 class="toc">Module Nexus</h1>
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<h2 class="toc">Classes</h2>
<a target="mainFrame" href="Bio.Nexus.Nexus.Block-class.html"
>Block</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus.CharBuffer-class.html"
>CharBuffer</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus.Commandline-class.html"
>Commandline</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus.Nexus-class.html"
>Nexus</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus.NexusError-class.html"
>NexusError</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus.StepMatrix-class.html"
>StepMatrix</a><br /> <h2 class="toc">Functions</h2>
<div class="private">
<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#_adjust_lines"
>_adjust_lines</a><br /> </div>
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>_compact4nexus</a><br /> </div>
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>_kill_comments_and_break_lines</a><br /> </div>
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<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#_make_unique"
>_make_unique</a><br /> </div>
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>_replace_parenthesized_ambigs</a><br /> </div>
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<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#_seqmatrix2strmatrix"
>_seqmatrix2strmatrix</a><br /> </div>
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<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#_sort_keys_by_values"
>_sort_keys_by_values</a><br /> </div>
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<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#_unique_label"
>_unique_label</a><br /> </div>
<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#combine"
>combine</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#get_start_end"
>get_start_end</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#quotestrip"
>quotestrip</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#safename"
>safename</a><br /> <h2 class="toc">Variables</h2>
<a target="mainFrame" href="Bio.Nexus.Nexus-module.html#C"
>C</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#CHARSET"
>CHARSET</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#CODONPOSITIONS"
>CODONPOSITIONS</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#DEFAULTNEXUS"
>DEFAULTNEXUS</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#INTERLEAVE"
>INTERLEAVE</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#KNOWN_NEXUS_BLOCKS"
>KNOWN_NEXUS_BLOCKS</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#MRBAYESSAFE"
>MRBAYESSAFE</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#PUNCTUATION"
>PUNCTUATION</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#SPECIALCOMMENTS"
>SPECIALCOMMENTS</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#SPECIAL_COMMANDS"
>SPECIAL_COMMANDS</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#TAXSET"
>TAXSET</a><br /> <a target="mainFrame" href="Bio.Nexus.Nexus-module.html#WHITESPACE"
>WHITESPACE</a><br /><hr />
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