<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>metatool_format</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <h1 class="toc">Module metatool_format</h1> <hr /> <h2 class="toc">Variables</h2> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#big_gap" >big_gap</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#blank" >blank</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#blank_line" >blank_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#blank_space" >blank_space</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#branch_metabolite" >branch_metabolite</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#branch_metabolite_block" >branch_metabolite_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#conservation_relations_block" >conservation_relations_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#conservation_relations_line" >conservation_relations_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#conservation_relations_tag" >conservation_relations_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#convex_basis_block" >convex_basis_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#convex_basis_line" >convex_basis_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#convex_basis_tag" >convex_basis_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#digits" >digits</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#elementary_modes_block" >elementary_modes_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#elementary_modes_line" >elementary_modes_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#elementary_modes_tag" >elementary_modes_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_conservation_relations" >end_conservation_relations</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_convex_basis" >end_convex_basis</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_elementary_modes" >end_elementary_modes</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_kernel" >end_kernel</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_not_balanced" >end_not_balanced</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_reduced_system" >end_reduced_system</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_stoichiometric" >end_stoichiometric</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#end_subsets" >end_subsets</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#enzyme" >enzyme</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#enzymes_block" >enzymes_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#enzymes_header" >enzymes_header</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#enzymes_list" >enzymes_list</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#graph_structure_block" >graph_structure_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#graph_structure_heading" >graph_structure_heading</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#graph_structure_line" >graph_structure_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#input_file_block" >input_file_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#input_file_line" >input_file_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#input_file_tag" >input_file_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#irreversible_vector" >irreversible_vector</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#kernel_block" >kernel_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#kernel_line" >kernel_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#kernel_tag" >kernel_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#little_gap" >little_gap</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#lower_case_letter" >lower_case_letter</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#matrix" >matrix</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#matrix_block" >matrix_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#matrix_element" >matrix_element</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#matrix_header" >matrix_header</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#matrix_row" >matrix_row</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_count_block" >metabolite_count_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_count_line" >metabolite_count_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_count_tag" >metabolite_count_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_info" >metabolite_info</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_line" >metabolite_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_role_cols" >metabolite_role_cols</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolite_roles_heading" >metabolite_roles_heading</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolites_block" >metabolites_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metabolites_summary" >metabolites_summary</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metatool_block" >metatool_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metatool_line" >metatool_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metatool_record" >metatool_record</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#metatool_tag" >metatool_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#non_branch_metabolite" >non_branch_metabolite</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#non_branch_metabolite_block" >non_branch_metabolite_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#not_balanced_block" >not_balanced_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#not_balanced_data" >not_balanced_data</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#not_balanced_line" >not_balanced_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#not_balanced_tag" >not_balanced_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#not_found_line" >not_found_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#num_cols" >num_cols</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#num_rows" >num_rows</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#optional_blank_space" >optional_blank_space</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reaction" >reaction</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reaction_count_block" >reaction_count_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reaction_count_line" >reaction_count_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reaction_count_tag" >reaction_count_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reactions_block" >reactions_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reactions_header" >reactions_header</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reactions_list" >reactions_list</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reduced_system_block" >reduced_system_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reduced_system_line" >reduced_system_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#reduced_system_tag" >reduced_system_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#rev" >rev</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#stoichiometric_block" >stoichiometric_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#stoichiometric_line" >stoichiometric_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#stoichiometric_tag" >stoichiometric_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#subsets_block" >subsets_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#subsets_line" >subsets_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#subsets_tag" >subsets_tag</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#sum_is_constant_block" >sum_is_constant_block</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#sum_is_constant_line" >sum_is_constant_line</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#tab" >tab</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#type_metabolite" >type_metabolite</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#unbalanced_metabolite" >unbalanced_metabolite</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#version" >version</a><br /> <a target="mainFrame" href="Bio.MetaTool.metatool_format-module.html#white_space" >white_space</a><br /><hr /> <span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. 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