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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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<h1 class="toc">Module MarkovModel</h1>
<hr />
  <h2 class="toc">Classes</h2>
    <a target="mainFrame" href="Bio.MarkovModel.MarkovModel-class.html"
     >MarkovModel</a><br />  <h2 class="toc">Functions</h2>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_argmaxes"
     >_argmaxes</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_backward"
     >_backward</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_baum_welch"
     >_baum_welch</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_baum_welch_one"
     >_baum_welch_one</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_copy_and_check"
     >_copy_and_check</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_exp_logsum"
     >_exp_logsum</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_forward"
     >_forward</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_logadd"
     >_logadd</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_logsum"
     >_logsum</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_logvecadd"
     >_logvecadd</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_mle"
     >_mle</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_normalize"
     >_normalize</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_random_norm"
     >_random_norm</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_readline_and_check_start"
     >_readline_and_check_start</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_safe_asarray"
     >_safe_asarray</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_safe_copy_and_check"
     >_safe_copy_and_check</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_safe_log"
     >_safe_log</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_uniform_norm"
     >_uniform_norm</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="Bio.MarkovModel-module.html#_viterbi"
     >_viterbi</a><br />  </div>
    <a target="mainFrame" href="Bio.MarkovModel-module.html#find_states"
     >find_states</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#load"
     >load</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#save"
     >save</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#train_bw"
     >train_bw</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#train_visible"
     >train_visible</a><br />  <h2 class="toc">Variables</h2>
    <a target="mainFrame" href="Bio.MarkovModel-module.html#Complex0"
     >Complex0</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Complex16"
     >Complex16</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Complex32"
     >Complex32</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Complex64"
     >Complex64</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Complex8"
     >Complex8</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Float0"
     >Float0</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Float16"
     >Float16</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Float32"
     >Float32</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Float64"
     >Float64</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Float8"
     >Float8</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Int0"
     >Int0</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Int16"
     >Int16</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Int32"
     >Int32</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Int64"
     >Int64</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#Int8"
     >Int8</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#LOG0"
     >LOG0</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#MATCODE"
     >MATCODE</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#MAX_ITERATIONS"
     >MAX_ITERATIONS</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#VERY_SMALL_NUMBER"
     >VERY_SMALL_NUMBER</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#__warningregistry__"
     >__warningregistry__</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#absolute"
     >absolute</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#add"
     >add</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arccos"
     >arccos</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arccosh"
     >arccosh</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arcsin"
     >arcsin</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arcsinh"
     >arcsinh</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arctan"
     >arctan</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arctan2"
     >arctan2</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#arctanh"
     >arctanh</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#bitwise_and"
     >bitwise_and</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#bitwise_or"
     >bitwise_or</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#bitwise_xor"
     >bitwise_xor</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#ceil"
     >ceil</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#conjugate"
     >conjugate</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#cos"
     >cos</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#cosh"
     >cosh</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#divide"
     >divide</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#divide_safe"
     >divide_safe</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#e"
     >e</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#equal"
     >equal</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#exp"
     >exp</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#fabs"
     >fabs</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#floor"
     >floor</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#floor_divide"
     >floor_divide</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#fmod"
     >fmod</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#greater"
     >greater</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#greater_equal"
     >greater_equal</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#hypot"
     >hypot</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#invert"
     >invert</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#left_shift"
     >left_shift</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#less"
     >less</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#less_equal"
     >less_equal</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#log"
     >log</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#log10"
     >log10</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#logical_and"
     >logical_and</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#logical_not"
     >logical_not</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#logical_or"
     >logical_or</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#logical_xor"
     >logical_xor</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#maximum"
     >maximum</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#minimum"
     >minimum</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#multiply"
     >multiply</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#negative"
     >negative</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#not_equal"
     >not_equal</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#pi"
     >pi</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#power"
     >power</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#remainder"
     >remainder</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#right_shift"
     >right_shift</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#sin"
     >sin</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#sinh"
     >sinh</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#sqrt"
     >sqrt</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#subtract"
     >subtract</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#tan"
     >tan</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#tanh"
     >tanh</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#this_module"
     >this_module</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#true_divide"
     >true_divide</a><br />    <a target="mainFrame" href="Bio.MarkovModel-module.html#x"
     >x</a><br /><hr />
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