<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>Bio.Crystal.Chain</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <!-- ==================== NAVIGATION BAR ==================== --> <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="middle"> <!-- Tree link --> <th> <a href="module-tree.html">Trees</a> </th> <!-- Index link --> <th> <a href="identifier-index.html">Indices</a> </th> <!-- Help link --> <th> <a href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr> </table> <table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <span class="breadcrumbs"> <a href="Bio-module.html">Package Bio</a> :: <a href="Bio.Crystal-module.html">Package Crystal</a> :: Class Chain </span> </td> <td> <table cellpadding="0" cellspacing="0"> <!-- hide/show private --> <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span></td></tr> <tr><td align="right"><span class="options" >[<a href="frames.html" target="_top">frames</a >] | <a href="Bio.Crystal.Chain-class.html" target="_top">no frames</a>]</span></td></tr> </table> </td> </tr> </table> <!-- ==================== CLASS DESCRIPTION ==================== --> <h1 class="epydoc">Class Chain</h1><p class="nomargin-top"><span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain">source code</a></span></p> <!-- ==================== INSTANCE METHODS ==================== --> <a name="section-InstanceMethods"></a> <table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"> <tr bgcolor="#70b0f0" class="table-header"> <td colspan="2" class="table-header"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> <tr valign="top"> <td align="left"><span class="table-header">Instance Methods</span></td> <td align="right" valign="top" ><span class="options">[<a href="#section-InstanceMethods" class="privatelink" onclick="toggle_private();" >hide private</a>]</span></td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">residues</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string"></code><code class="variable-quote">'</code></span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__init__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="validate"></a><span class="summary-sig-name">validate</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.validate">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="validate_element"></a><span class="summary-sig-name">validate_element</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">element</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.validate_element">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__str__"></a><span class="summary-sig-name">__str__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__str__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__eq__"></a><span class="summary-sig-name">__eq__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__eq__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__ne__"></a><span class="summary-sig-name">__ne__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span><br /> Returns true iff self is not equal to other.</td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__ne__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__len__"></a><span class="summary-sig-name">__len__</span>(<span class="summary-sig-arg">self</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__len__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__getitem__"></a><span class="summary-sig-name">__getitem__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__getitem__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__setitem__"></a><span class="summary-sig-name">__setitem__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__setitem__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__delitem__"></a><span class="summary-sig-name">__delitem__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__delitem__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__getslice__"></a><span class="summary-sig-name">__getslice__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>, <span class="summary-sig-arg">j</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__getslice__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__setslice__"></a><span class="summary-sig-name">__setslice__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>, <span class="summary-sig-arg">j</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__setslice__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__delslice__"></a><span class="summary-sig-name">__delslice__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>, <span class="summary-sig-arg">j</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__delslice__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__contains__"></a><span class="summary-sig-name">__contains__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__contains__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="append"></a><span class="summary-sig-name">append</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.append">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="insert"></a><span class="summary-sig-name">insert</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">i</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.insert">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="remove"></a><span class="summary-sig-name">remove</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.remove">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="count"></a><span class="summary-sig-name">count</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.count">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="index"></a><span class="summary-sig-name">index</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">item</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.index">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__add__"></a><span class="summary-sig-name">__add__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__add__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__radd__"></a><span class="summary-sig-name">__radd__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__radd__">source code</a></span> </td> </tr> </table> </td> </tr> <tr> <td width="15%" align="right" valign="top" class="summary"> <span class="summary-type"> </span> </td><td class="summary"> <table width="100%" cellpadding="0" cellspacing="0" border="0"> <tr> <td><span class="summary-sig"><a name="__iadd__"></a><span class="summary-sig-name">__iadd__</span>(<span class="summary-sig-arg">self</span>, <span class="summary-sig-arg">other</span>)</span></td> <td align="right" valign="top"> <span class="codelink"><a href="Bio.Crystal-pysrc.html#Chain.__iadd__">source 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