<?xml version="1.0" encoding="ascii"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <head> <title>NCBIStandalone</title> <link rel="stylesheet" href="epydoc.css" type="text/css" /> <script type="text/javascript" src="epydoc.js"></script> </head> <body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"> <h1 class="toc">Module NCBIStandalone</h1> <hr /> <h2 class="toc">Classes</h2> <a target="mainFrame" href="Bio.Blast.NCBIStandalone.BlastErrorParser-class.html" >BlastErrorParser</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone.BlastParser-class.html" >BlastParser</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone.Iterator-class.html" >Iterator</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone.LowQualityBlastError-class.html" >LowQualityBlastError</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone.PSIBlastParser-class.html" >PSIBlastParser</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone.ShortQueryBlastError-class.html" >ShortQueryBlastError</a><br /> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html" >_AlignmentConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._BlastConsumer-class.html" >_BlastConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._BlastErrorConsumer-class.html" >_BlastErrorConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html" >_DatabaseReportConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html" >_DescriptionConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html" >_HSPConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._HeaderConsumer-class.html" >_HeaderConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html" >_PSIBlastConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" >_ParametersConsumer</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone._Scanner-class.html" >_Scanner</a><br /> </div> <h2 class="toc">Functions</h2> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#_get_cols" >_get_cols</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#_re_search" >_re_search</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#_safe_float" >_safe_float</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#_safe_int" >_safe_int</a><br /> </div> <div class="private"> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#_security_check_parameters" >_security_check_parameters</a><br /> </div> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#blastall" >blastall</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#blastpgp" >blastpgp</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#rpsblast" >rpsblast</a><br /> <h2 class="toc">Variables</h2> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#StringTypes" >StringTypes</a><br /> <a target="mainFrame" href="Bio.Blast.NCBIStandalone-module.html#xml_support" >xml_support</a><br /><hr /> <span class="options">[<a href="javascript:void(0);" class="privatelink" onclick="toggle_private();">hide private</a>]</span> <script type="text/javascript"> <!-- // Private objects are initially displayed (because if // javascript is turned off then we want them to be // visible); but by default, we want to hide them. So hide // them unless we have a cookie that says to show them. checkCookie(); // --> </script> </body> </html>