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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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<h1 class="epydoc">Identifier Index</h1>
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[
 <a href="identifier-index-A.html">A</a>
 <a href="identifier-index-B.html">B</a>
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 <a href="identifier-index-D.html">D</a>
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 <a href="identifier-index-F.html">F</a>
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 <a href="identifier-index-H.html">H</a>
 <a href="identifier-index-I.html">I</a>
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 <a href="identifier-index-M.html">M</a>
 <a href="identifier-index-N.html">N</a>
 <a href="identifier-index-O.html">O</a>
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 <a href="identifier-index-Q.html">Q</a>
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 <a href="identifier-index-V.html">V</a>
 <a href="identifier-index-W.html">W</a>
 <a href="identifier-index-X.html">X</a>
 <a href="identifier-index-Y.html">Y</a>
  Z
 <a href="identifier-index-_.html">_</a>
]
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<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="A">A</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#a_info">a_info</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_text_decode_handler">add_text_decode_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Utils-module.html#approximate_fst">approximate_fst()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PopGen.FDist.Utils-module.html">Bio.PopGen.FDist.Utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide-module.html#aa1">aa1</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_text_dict_handler">add_text_dict_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide-module.html#aa3">aa3</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_text_handler">add_text_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#abi_thumbprint">abi_thumbprint()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#add_text_to_object">add_text_to_object()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPAlignDict-class.html#abs">abs()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP.FSSPAlignDict-class.html">FSSPAlignDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.MEMEMotif-class.html#add_to_logodds">add_to_logodds()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Motif.MEMEMotif-class.html">MEMEMotif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#abs_res_num">abs_res_num</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser._MEMEConsumer-class.html#add_to_logodds">add_to_logodds()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Parser._MEMEConsumer-class.html" onclick="show_private();">_MEMEConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.MEMEMotif-class.html#add_to_pssm">add_to_pssm()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Motif.MEMEMotif-class.html">MEMEMotif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser._MEMEConsumer-class.html#add_to_pssm">add_to_pssm()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Parser._MEMEConsumer-class.html" onclick="show_private();">_MEMEConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NetCatch.NetCatch-class.html#add_url">add_url()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NetCatch.NetCatch-class.html">NetCatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_value_handler">add_value_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arccos">arccos</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#addnode">addnode()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#address">address()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#addRule">addRule()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#absolute">absolute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.af-class.html">af</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.AbsoluteLocation-class.html">AbsoluteLocation</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#af">af()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Abstract-module.html">Abstract</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GA.Selection-module.html">Bio.GA.Selection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.pairwise2.affine_penalty-class.html">affine_penalty</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.pairwise2-module.html">Bio.pairwise2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#abstract">abstract()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy-module.html">Affy</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#abstract_author">abstract_author()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.AfterPosition-class.html">AfterPosition</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arccosh">arccosh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap-class.html">AbstractAtomPropertyMap</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.AbstractPropertyMap-module.html">Bio.PDB.AbstractPropertyMap</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.FeatureQuery-class.html#aggregate">aggregate()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GFF.FeatureQuery-class.html">FeatureQuery</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Application.AbstractCommandline-class.html">AbstractCommandline</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Application-module.html">Bio.Application</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais-module.html">Ais</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.AbstractConsumer-class.html">AbstractConsumer</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Search.Algorithm-class.html">Algorithm</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Search-module.html">Bio.Search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.AbstractCut-class.html">AbstractCut</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align-module.html">Align</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html">AbstractDPAlgorithms</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.HMM.DynamicProgramming-module.html">Bio.HMM.DynamicProgramming</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html">align</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP.fssp_rec-module.html">Bio.FSSP.fssp_rec</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html">AbstractLayer</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NeuralNetwork.BackPropagation.Layer-module.html">Bio.NeuralNetwork.BackPropagation.Layer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.pairwise2-module.html#align">align</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.pairwise2-module.html">Bio.pairwise2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.AbstractParser-class.html">AbstractParser</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html#align">align()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html" onclick="show_private();">_HSPConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.AbstractPosition-class.html">AbstractPosition</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise-module.html#align">align()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise-module.html">Bio.Wise</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arcsin">arcsin</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.AbstractPropertyMap-module.html">AbstractPropertyMap</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.dnal-module.html#align">align()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.dnal-module.html">Bio.Wise.dnal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html">AbstractPropertyMap</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.AbstractPropertyMap-module.html">Bio.PDB.AbstractPropertyMap</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw-module.html#align">align()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html">AbstractResiduePropertyMap</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.AbstractPropertyMap-module.html">Bio.PDB.AbstractPropertyMap</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce-module.html">AlignAce</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Abstract.AbstractSelection-class.html">AbstractSelection</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GA.Selection.Abstract-module.html">Bio.GA.Selection.Abstract</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.AlignAceStandalone-module.html#AlignAce">AlignAce()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.AlignAceStandalone-module.html">Bio.AlignAce.AlignAceStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer.AbstractTrainer-class.html">AbstractTrainer</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.HMM.Trainer-module.html">Bio.HMM.Trainer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Applications.AlignAceCommandline-class.html">AlignAceCommandline</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.Applications-module.html">Bio.AlignAce.Applications</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blocks-module.html#AC">AC</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.blocks-module.html">Bio.expressions.blocks</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.Parser-module.html">Bio.AlignAce.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#AC">AC</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceParser-class.html">AlignAceParser</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.Parser-module.html">Bio.AlignAce.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#AC">AC</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Scanner.AlignAceScanner-class.html">AlignAceScanner</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.Scanner-module.html">Bio.AlignAce.Scanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arcsinh">arcsinh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#AC">AC</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.AlignAceStandalone-module.html">AlignAceStandalone</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce-module.html">Bio.AlignAce</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#AC_block">AC_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#aligned_block">aligned_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#AC_block">AC_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#aligned_contents_line">aligned_contents_line</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#AC_block">AC_block</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#aligned_contents_multiline">aligned_contents_multiline</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#AC_block">AC_block</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#aligned_key_line">aligned_key_line</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#AC_line">AC_line</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#aligned_tag">aligned_tag</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#acc">acc</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo-module.html">AlignInfo</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Align-module.html">Bio.Align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Dice.ChainSelector-class.html#accept_atom">accept_atom()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Dice.ChainSelector-class.html">ChainSelector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO-module.html">AlignIO</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arctan">arctan</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.Select-class.html#accept_atom">accept_atom()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.PDBIO%27.Select-class.html">Select</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.Generic.Alignment-class.html">Alignment</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Align.Generic-module.html">Bio.Align.Generic</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Dice.ChainSelector-class.html#accept_chain">accept_chain()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Dice.ChainSelector-class.html">ChainSelector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Record.Alignment-class.html">Alignment</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Blast.Record-module.html">Bio.Blast.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.Select-class.html#accept_chain">accept_chain()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.PDBIO%27.Select-class.html">Select</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw.Alignment-class.html">Alignment</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Dice.ChainSelector-class.html#accept_model">accept_model()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Dice.ChainSelector-class.html">ChainSelector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#alignment">alignment</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.Select-class.html#accept_model">accept_model()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.PDBIO%27.Select-class.html">Select</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#alignment_header">alignment_header</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Dice.ChainSelector-class.html#accept_residue">accept_residue()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Dice.ChainSelector-class.html">ChainSelector</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw.AlignmentColumn-class.html">AlignmentColumn</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.Select-class.html#accept_residue">accept_residue()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.PDBIO%27.Select-class.html">Select</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw.AlignmentColumnFullException-class.html">AlignmentColumnFullException</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#accession">accession</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CAPS.AlignmentHasDifferentLengthsError-class.html">AlignmentHasDifferentLengthsError</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CAPS-module.html">Bio.CAPS</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arctan2">arctan2</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#accession">accession</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.AlignmentIterator-class.html">AlignmentIterator</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignIO.Interfaces-module.html">Bio.AlignIO.Interfaces</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#accession">accession()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP-module.html#alignments_rec">alignments_rec</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP-module.html">Bio.FSSP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#accession">accession()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP-module.html#alignments_title">alignments_title</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP-module.html">Bio.FSSP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc._RecordConsumer-class.html#accession">accession()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Prosite.Prodoc._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html">AlignmentWriter</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignIO.Interfaces-module.html">Bio.AlignIO.Interfaces</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#accession">accession()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#all_get_indices">all_get_indices()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#accession">accession()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#all_get_radii">all_get_radii()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#accession">accession()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html#all_ids">all_ids()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#accession_block">accession_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html#all_letters_sum">all_letters_sum()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#arctanh">arctanh</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#accnum_block">accnum_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise-module.html#all_pairs">all_pairs()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise-module.html">Bio.Wise</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.ArgsParser-class.html">ArgsParser</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#accnum_block_key">accnum_block_key</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#all_search">all_search()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#aromaticity">aromaticity()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#accnum_block_keys">accnum_block_keys</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers">all_suppliers()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction.AbstractCut-class.html">AbstractCut</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#as_string">as_string()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#ACCREP">ACCREP</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.Schema-class.html#all_unambiguous">all_unambiguous()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NeuralNetwork.Gene.Schema.Schema-class.html">Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.listfns-module.html#asdict">asdict()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.listfns-module.html">Bio.listfns</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace-module.html">Ace</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Sequencing-module.html">Bio.Sequencing</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction-module.html#AllEnzymes">AllEnzymes</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Assert-class.html">Assert</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.ACEFileRecord-class.html">ACEFileRecord</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict.OrderedMultiDict-class.html#allitems">allitems()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict.OrderedMultiDict-class.html">OrderedMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#ASSERT">ASSERT</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.AceIO-module.html">AceIO</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict.UnorderedMultiDict-class.html#allitems">allitems()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict.UnorderedMultiDict-class.html">UnorderedMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#ASSERT">ASSERT</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.AceIO-module.html#AceIterator">AceIterator()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SeqIO.AceIO-module.html">Bio.SeqIO.AceIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict.OrderedMultiDict-class.html#allkeys">allkeys()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict.OrderedMultiDict-class.html">OrderedMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Assert">Assert()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.ACEParser-class.html">ACEParser</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict.UnorderedMultiDict-class.html#allkeys">allkeys()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict.UnorderedMultiDict-class.html">UnorderedMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#ASSERT_NOT">ASSERT_NOT</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Async.SplitFDist-class.html#acquire">acquire()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PopGen.FDist.Async.SplitFDist-class.html">SplitFDist</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#allow_all_transitions">allow_all_transitions()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#ASSERT_NOT">ASSERT_NOT</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.DispatchHandler-class.html#acquire">acquire()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Dispatch.DispatchHandler-class.html">DispatchHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#allow_transition">allow_transition()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#AssertNot">AssertNot()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Dispatcher-class.html#acquire">acquire()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Dispatch.Dispatcher-class.html">Dispatcher</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict.OrderedMultiDict-class.html#allvalues">allvalues()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict.OrderedMultiDict-class.html">OrderedMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html">Astral</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.BioSeqDatabase-module.html">BioSQL.BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict.UnorderedMultiDict-class.html#allvalues">allvalues()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict.UnorderedMultiDict-class.html">UnorderedMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#astralBibIds">astralBibIds</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html">Alphabet</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#astralEv_to_file">astralEv_to_file</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Alphabet-class.html">Alphabet</a></td>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#astralEv_to_sql">astralEv_to_sql</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.Prosite-class.html#alphabet">alphabet</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Prosite.Pattern.Prosite-class.html">Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#astralEvs">astralEvs</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#alphabet">alphabet()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async-module.html">Async</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PopGen-module.html">Bio.PopGen</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html#alphabet_matches">alphabet_matches</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html">SchemaDNAAlphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async.Async-class.html">Async</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PopGen.Async-module.html">Bio.PopGen.Async</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence-module.html#alphabet_table">alphabet_table</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence-module.html">Bio.builders.SeqRecord.sequence</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Async-module.html">Async</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PopGen.FDist-module.html">Bio.PopGen.FDist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.AlphabetEncoder-class.html">AlphabetEncoder</a></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Async-module.html">Async</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#add">add</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Alt-class.html">Alt</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT">AT</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Alt">Alt()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT">AT</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Enzyme._RecordConsumer-class.html#alternate_name">alternate_name()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Enzyme._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_BEGINNING">AT_BEGINNING</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html" onclick="show_private();">_ChromosomeComponent</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#alternative_download_url">alternative_download_url</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_BEGINNING">AT_BEGINNING</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#ambiguity">ambiguity()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_BEGINNING_LINE">AT_BEGINNING_LINE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Ambiguous-class.html">Ambiguous</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_BEGINNING_LINE">AT_BEGINNING_LINE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC-module.html#ambiguous_dna">ambiguous_dna</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Alphabet.IUPAC-module.html">Bio.Alphabet.IUPAC</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_BEGINNING_STRING">AT_BEGINNING_STRING</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.DisorderedResidue-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Residue.DisorderedResidue-class.html">DisorderedResidue</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#ambiguous_dna_by_id">ambiguous_dna_by_id</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_BEGINNING_STRING">AT_BEGINNING_STRING</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.Residue-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Residue.Residue-class.html">Residue</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate-module.html#ambiguous_dna_by_id">ambiguous_dna_by_id</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_BOUNDARY">AT_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.HashSet.HashSet-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Rep.HashSet.HashSet-class.html">HashSet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#ambiguous_dna_by_name">ambiguous_dna_by_name</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_BOUNDARY">AT_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate-module.html#ambiguous_dna_by_name">ambiguous_dna_by_name</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_CDATA">AT_CDATA</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.FormatRegistry.FormatGroup-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.config.FormatRegistry.FormatGroup-class.html">FormatGroup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_dna_complement">ambiguous_dna_complement</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_END">AT_END</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.Registry.RegisterableGroup-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.config.Registry.RegisterableGroup-class.html">RegisterableGroup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_dna_letters">ambiguous_dna_letters</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_END">AT_END</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.MulticallEnd-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Dispatch.MulticallEnd-class.html">MulticallEnd</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_dna_values">ambiguous_dna_values</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_END_LINE">AT_END_LINE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.MulticallStart-class.html#add">add()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Dispatch.MulticallStart-class.html">MulticallStart</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_dna_weight_ranges">ambiguous_dna_weight_ranges</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_END_LINE">AT_END_LINE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.Registry.RegisterableGroup-class.html#add_after">add_after()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.config.Registry.RegisterableGroup-class.html">RegisterableGroup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#ambiguous_generic_by_id">ambiguous_generic_by_id</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_END_STRING">AT_END_STRING</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPAlignRec-class.html#add_align_list">add_align_list()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.FSSP.FSSPAlignRec-class.html">FSSPAlignRec</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#ambiguous_generic_by_name">ambiguous_generic_by_name</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_END_STRING">AT_END_STRING</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.ClassHolder-class.html#add_attribute">add_attribute()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.ClassHolder-class.html">ClassHolder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC-module.html#ambiguous_rna">ambiguous_rna</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Alphabet.IUPAC-module.html">Bio.Alphabet.IUPAC</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_ENTITIES">AT_ENTITIES</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.FunctionHolder-class.html#add_attribute">add_attribute()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.FunctionHolder-class.html">FunctionHolder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#ambiguous_rna_by_id">ambiguous_rna_by_id</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_ENTITY">AT_ENTITY</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.Registry.RegisterableGroup-class.html#add_before">add_before()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.config.Registry.RegisterableGroup-class.html">RegisterableGroup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate-module.html#ambiguous_rna_by_id">ambiguous_rna_by_id</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_ID">AT_ID</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#add_blank">add_blank()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#ambiguous_rna_by_name">ambiguous_rna_by_name</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_IDREF">AT_IDREF</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#add_class">add_class()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate-module.html#ambiguous_rna_by_name">ambiguous_rna_by_name</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_IDREFS">AT_IDREFS</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#add_comment">add_comment()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_rna_complement">ambiguous_rna_complement</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_LOC_BOUNDARY">AT_LOC_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#add_count">add_count()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html">ChromosomeCounts</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_rna_letters">ambiguous_rna_letters</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_LOC_BOUNDARY">AT_LOC_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#add_dbid">add_dbid()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_rna_values">ambiguous_rna_values</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_LOC_NON_BOUNDARY">AT_LOC_NON_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#add_dbxref">add_dbxref()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#ambiguous_rna_weight_ranges">ambiguous_rna_weight_ranges</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_LOC_NON_BOUNDARY">AT_LOC_NON_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#add_dbxref_dbids">add_dbxref_dbids()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Transcribe-module.html#ambiguous_transcriber">ambiguous_transcriber</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Transcribe-module.html">Bio.Transcribe</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_LOCALE">AT_LOCALE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#add_description">add_description()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.AmbiguousCodonTable-class.html">AmbiguousCodonTable</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_LOCALE">AT_LOCALE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#add_doc">add_doc()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.AmbiguousForwardTable-class.html">AmbiguousForwardTable</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_MULTILINE">AT_MULTILINE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html#add_edge">add_edge()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Repair.Stabilizing.AmbiguousRepair-class.html">AmbiguousRepair</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GA.Repair.Stabilizing-module.html">Bio.GA.Repair.Stabilizing</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_MULTILINE">AT_MULTILINE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#add_edge">add_edge()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#amplifier">amplifier</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_NMTOKEN">AT_NMTOKEN</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.ParseBlastTable.BlastTableRec-class.html#add_entry">add_entry()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Blast.ParseBlastTable.BlastTableRec-class.html">BlastTableRec</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#amplifier">amplifier()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html" onclick="show_private();">_PrimerSearchRecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#AT_NMTOKENS">AT_NMTOKENS</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#add_entry">add_entry()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#amplifier_length">amplifier_length</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_NON_BOUNDARY">AT_NON_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Training.ExampleManager-class.html#add_examples">add_examples()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NeuralNetwork.Training.ExampleManager-class.html">ExampleManager</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#amplifier_length">amplifier_length()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html" onclick="show_private();">_PrimerSearchRecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_NON_BOUNDARY">AT_NON_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_features-class.html#add_feature_qualifier">add_feature_qualifier()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler.Handle_features-class.html">Handle_features</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#amplifier_length_line">amplifier_length_line</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_UNI_BOUNDARY">AT_UNI_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#add_features">add_features()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#amplifier_sequence">amplifier_sequence</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_UNI_BOUNDARY">AT_UNI_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.WriteDB-class.html#add_filename">add_filename()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Mindy.BaseDB.WriteDB-class.html">WriteDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#amplifier_sequence">amplifier_sequence()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html" onclick="show_private();">_PrimerSearchRecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_UNI_NON_BOUNDARY">AT_UNI_NON_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_first_text_handler">add_first_text_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#amplifier_sequence_lines">amplifier_sequence_lines</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_UNI_NON_BOUNDARY">AT_UNI_NON_BOUNDARY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#add_function">add_function()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#amplimer_line">amplimer_line</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#AT_UNICODE">AT_UNICODE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Generate.GeneratorState-class.html#add_group">add_group()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Generate.GeneratorState-class.html">GeneratorState</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#AT_UNICODE">AT_UNICODE</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#add_header">add_header()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.And-class.html">And</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.AtBeginning-class.html">AtBeginning</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#add_hsp">add_hsp()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27.Vector-class.html#angle">angle()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Vector%27.Vector-class.html">Vector</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#ATCODES">ATCODES</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp-class.html#add_hsp_seqs">add_hsp_seqs()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler.Handle_hsp-class.html">Handle_hsp</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA-module.html#annotate">annotate()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.PSEA-module.html">Bio.PDB.PSEA</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#ATCODES">ATCODES</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#add_import">add_import()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeq.DBSeqRecord-class.html#annotations">annotations</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.BioSeq.DBSeqRecord-class.html">DBSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.AtEnd-class.html">AtEnd</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#add_instance">add_instance()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#Antiparallel">Antiparallel()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom-module.html">Atom</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.Motif-class.html#add_instance">add_instance()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#ANY">ANY</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html">Atom</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Atom-module.html">Bio.PDB.Atom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser._MEMEConsumer-class.html#add_instance">add_instance()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Parser._MEMEConsumer-class.html" onclick="show_private();">_MEMEConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Any-class.html">Any</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ParserSupport-module.html#attempt_read_and_call">attempt_read_and_call()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Motif.MEMEMotif-class.html#add_instance_from_values">add_instance_from_values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MEME.Motif.MEMEMotif-class.html">MEMEMotif</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#ANY">ANY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.IconUrl-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.IconUrl-class.html">IconUrl</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_int_handler">add_int_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#ANY">ANY</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ObjectUrl-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.ObjectUrl-class.html">ObjectUrl</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#add_interaction">add_interaction()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Any">Any()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Url-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.Url-class.html">Url</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#add_label">add_label()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html">ChromosomeCounts</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#ANY_ALL">ANY_ALL</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.apad-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.apad-class.html">apad</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_features-class.html#add_location">add_location()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler.Handle_features-class.html">Handle_features</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#ANY_ALL">ANY_ALL</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.pad-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.pad-class.html">pad</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.ClassHolder-class.html#add_method">add_method()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.ClassHolder-class.html">ClassHolder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#any_float">any_float</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.strip-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.strip-class.html">strip</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ObjectParserHandler-class.html#add_module">add_module()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.ObjectParserHandler-class.html">ObjectParserHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#any_integer">any_integer</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.subs-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut.subs-class.html">subs</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#add_nocheck">add_nocheck()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#any_space">any_space</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Id-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.eLink_020511.Id-class.html">Id</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html#add_node">add_node()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#AnyBut">AnyBut()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSummary_020511.Item-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.eSummary_020511.Item-class.html">Item</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#add_node">add_node()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.AnyEol-class.html">AnyEol</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#ATTLIST">ATTLIST</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.PrimerSearchInputRecord-class.html#add_primer_set">add_primer_set()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss.Primer.PrimerSearchInputRecord-class.html">PrimerSearchInputRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.apad-class.html">apad</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Attribute-class.html">Attribute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.System-class.html#add_reaction">add_reaction()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.System-class.html">System</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Chain-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Crystal.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Attribute-class.html">Attribute</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html#add_record">add_record()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Mindy.BerkeleyDB.BerkeleyDB-class.html">BerkeleyDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.AttributeList-class.html">AttributeList</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.MemoryFlatDB-class.html#add_record">add_record()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Mindy.FlatDB.MemoryFlatDB-class.html">MemoryFlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#attributes">attributes()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IDREFS-class.html#add_ref">add_ref()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.IDREFS-class.html">IDREFS</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.SeqMap-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SCOP.Raf.SeqMap-class.html">SeqMap</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#attrs">attrs</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.FragmentMapper%27.Fragment-class.html#add_residue">add_residue()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.FragmentMapper%27.Fragment-class.html">Fragment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#augment">augment()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Align.Generic.Alignment-class.html#add_sequence">add_sequence()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Align.Generic.Alignment-class.html">Alignment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw.Alignment-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.psw.Alignment-class.html">Alignment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#author">author()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#add_sequence">add_sequence()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw.AlignmentColumn-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Wise.psw.AlignmentColumn-class.html">AlignmentColumn</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#authors">authors()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#add_sequence">add_sequence()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.SubPattern-class.html#append">append()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.msre_parse.SubPattern-class.html">SubPattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#authors">authors()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#add_species">add_species()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#append_sets">append_sets()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#authors_block">authors_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#add_stats">add_stats()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.AppendableListDictionary-class.html#append_to">append_to()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GFF.GenericTools.AppendableListDictionary-class.html">AppendableListDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.Adaptor-class.html#autocommit">autocommit()</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.BioSeqDatabase.Adaptor-class.html">Adaptor</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#add_succ">add_succ()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.AppendableListDictionary-class.html">AppendableListDictionary</a></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Generic_dbutils-class.html#autocommit">autocommit()</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.DBUtils.Generic_dbutils-class.html">Generic_dbutils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#add_supplier">add_supplier()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Application-module.html">Application</a><br />
<span class="index-where">(in&nbsp;<a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Pgdb_dbutils-class.html#autocommit">autocommit()</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.DBUtils.Pgdb_dbutils-class.html">Pgdb_dbutils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#add_table">add_table()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#application_name">application_name()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Psycopg_dbutils-class.html#autocommit">autocommit()</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.DBUtils.Psycopg_dbutils-class.html">Psycopg_dbutils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.support.Storage-class.html#add_test">add_test()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.test.support.Storage-class.html">Storage</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#application_version">application_version()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#available_matrices">available_matrices</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.support.Storage-class.html#add_test_lines">add_test_lines()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.test.support.Storage-class.html">Storage</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Application.ApplicationResult-class.html">ApplicationResult</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Application-module.html">Bio.Application</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Application.ApplicationResult-class.html#available_results">available_results()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Application.ApplicationResult-class.html">ApplicationResult</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.Comment-class.html#add_text">add_text()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.Comment-class.html">Comment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Applications-module.html">Applications</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce-module.html">Bio.AlignAce</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#avg_ambiguous_dna_weights">avg_ambiguous_dna_weights</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#add_text">add_text()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Applications-module.html">Applications</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Blast-module.html">Bio.Blast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#avg_ambiguous_rna_weights">avg_ambiguous_rna_weights</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IndentedText-class.html#add_text">add_text()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.IndentedText-class.html">IndentedText</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications-module.html">Applications</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Emboss-module.html">Bio.Emboss</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#avg_extended_protein_weights">avg_extended_protein_weights</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#add_text">add_text()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Superimposer%27.Superimposer-class.html#apply">apply()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Superimposer%27.Superimposer-class.html">Superimposer</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html#add_text_block_handler">add_text_block_handler()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.StdHandler-module.html">Bio.StdHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#apply_on_multi_fasta">apply_on_multi_fasta()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
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