<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Identifier Index</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%"> </td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="identifier-index-W.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<table border="0" width="100%">
<tr valign="bottom"><td>
<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="W">W</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.wa-class.html">wa</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#wr_data">wr_data()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NMR.xpktools.Peaklist-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.NMR.xpktools.Peaklist-class.html">Peaklist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#wa_data">wa_data()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#wr_start">wr_start()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace._RecordConsumer-class.html#wa_start">wa_start()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal-module.html#wrap_line">wrap_line()</a><br />
<span class="index-where">(in <a href="Bio.Crystal-module.html">Bio.Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.WWW.RequestLimiter-class.html#wait">wait()</a><br />
<span class="index-where">(in <a href="Bio.WWW.RequestLimiter-class.html">RequestLimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_hie">write_hie()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Problem-class.html#WARNING">WARNING</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.Problem-class.html">Problem</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO-module.html">Bio.AlignIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_hie_sql">write_hie_sql()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.WarningList-class.html">WarningList</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#write_nexus_data">write_nexus_data()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.WarningProblem-class.html">WarningProblem</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#write_nexus_data_partitions">write_nexus_data_partitions()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications.WaterCommandline-class.html">WaterCommandline</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Applications-module.html">Bio.Emboss.Applications</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html">PatternIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#write_paths">write_paths()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html">web_parse</a><br />
<span class="index-where">(in <a href="Bio.LocusLink-module.html">Bio.LocusLink</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO-module.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.FastaIO.FastaWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.FastaIO.FastaWriter-class.html">FastaWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.ePost_020511.WebEnv-class.html">WebEnv</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.ePost_020511-module.html">Bio.EUtils.DTDs.ePost_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Writer.Writer-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.Writer.Writer-class.html">Writer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.WebEnv-class.html">WebEnv</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.writers.SeqRecord.embl.WriteEmbl-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.writers.SeqRecord.embl.WriteEmbl-class.html">WriteEmbl</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#weblogo">weblogo()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.writers.SeqRecord.fasta.WriteFasta-class.html#write">write()</a><br />
<span class="index-where">(in <a href="Bio.writers.SeqRecord.fasta.WriteFasta-class.html">WriteFasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.ConvertDispatchHandler-class.html#write_record">write_record()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.ConvertDispatchHandler-class.html">ConvertDispatchHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#weighted_stepmatrix">weighted_stepmatrix()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.ClustalIO.ClustalWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.ClustalIO.ClustalWriter-class.html">ClustalWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records">write_records()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#weighting">weighting()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html">EmbossWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#write_repr">write_repr()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#white_space">white_space</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#write_seq">write_seq()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html">PatternIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#white_space">white_space</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.PhylipIO.PhylipWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.PhylipIO.PhylipWriter-class.html">PhylipWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#write_xmlfile">write_xmlfile()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#white_space">white_space</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html#write_alignment">write_alignment()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.WriteDB-class.html">WriteDB</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BaseDB-module.html">Bio.Mindy.BaseDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html#white_space">white_space</a><br />
<span class="index-where">(in <a href="Bio.Saf.saf_format-module.html">Bio.Saf.saf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_cla">write_cla()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.writers.SeqRecord.embl.WriteEmbl-class.html">WriteEmbl</a><br />
<span class="index-where">(in <a href="Bio.writers.SeqRecord.embl-module.html">Bio.writers.SeqRecord.embl</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#white_spaces">white_spaces</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_cla_sql">write_cla_sql()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.writers.SeqRecord.empty.WriteEmpty-class.html">WriteEmpty</a><br />
<span class="index-where">(in <a href="Bio.writers.SeqRecord.empty-module.html">Bio.writers.SeqRecord.empty</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#WHITESPACE">WHITESPACE</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB-module.html#write_config">write_config()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BaseDB-module.html">Bio.Mindy.BaseDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.writers.SeqRecord.fasta.WriteFasta-class.html">WriteFasta</a><br />
<span class="index-where">(in <a href="Bio.writers.SeqRecord.fasta-module.html">Bio.writers.SeqRecord.fasta</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#whitespace">whitespace</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_des">write_des()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html#writefile">writefile()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#WHITESPACE">WHITESPACE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html#write_des_sql">write_des_sql()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Scop-class.html">Scop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#writefileobject">writefileobject()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#window_size">window_size()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.AlignmentWriter-class.html">AlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Writer.Writer-class.html#writeFooter">writeFooter()</a><br />
<span class="index-where">(in <a href="Bio.Writer.Writer-class.html">Writer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise-module.html">Wise</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Writer.Writer-class.html#writeHeader">writeHeader()</a><br />
<span class="index-where">(in <a href="Bio.Writer.Writer-class.html">Writer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_N_sites">with_N_sites()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.ClustalIO.ClustalWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.ClustalIO.ClustalWriter-class.html">ClustalWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html#writeln">writeln()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_name">with_name()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html">SequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Writer-module.html">Writer</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_number_list">with_number_list()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Writer.Writer-class.html">Writer</a><br />
<span class="index-where">(in <a href="Bio.Writer-module.html">Bio.Writer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_site_size">with_site_size()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhylipIO.PhylipWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.PhylipIO.PhylipWriter-class.html">PhylipWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.writers-module.html">writers</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#with_sites">with_sites()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html#write_file">write_file()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Astral-class.html#writeToSQL">writeToSQL()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Astral-class.html">Astral</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.WithinNDays-class.html">WithinNDays</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html">EmbossWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#wu_blastn">wu_blastn</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.WithinPosition-class.html">WithinPosition</a><br />
<span class="index-where">(in <a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#wu_blastp">wu_blastp</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#without_site">without_site()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#wu_blastx">wu_blastx</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel-module.html#Word">Word()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html#write_footer">write_footer()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html">wublast</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast-module.html">Bio.expressions.blast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Gobase._RecordConsumer-class.html#word_field">word_field()</a><br />
<span class="index-where">(in <a href="Bio.Gobase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.EmbossIO.EmbossWriter-class.html">EmbossWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#wublast_version">wublast_version</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.wr-class.html">wr</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header">write_header()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW-module.html">WWW</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
</table>
</td></tr>
</table>
<br /><br /><!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:18 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
