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biopython-doc-1.47-2mdv2008.1.x86_64.rpm

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<h1 class="epydoc">Identifier Index</h1>
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[
 <a href="identifier-index-A.html">A</a>
 <a href="identifier-index-B.html">B</a>
 <a href="identifier-index-C.html">C</a>
 <a href="identifier-index-D.html">D</a>
 <a href="identifier-index-E.html">E</a>
 <a href="identifier-index-F.html">F</a>
 <a href="identifier-index-G.html">G</a>
 <a href="identifier-index-H.html">H</a>
 <a href="identifier-index-I.html">I</a>
 <a href="identifier-index-J.html">J</a>
 <a href="identifier-index-K.html">K</a>
 <a href="identifier-index-L.html">L</a>
 <a href="identifier-index-M.html">M</a>
 <a href="identifier-index-N.html">N</a>
 <a href="identifier-index-O.html">O</a>
 <a href="identifier-index-P.html">P</a>
 <a href="identifier-index-Q.html">Q</a>
 <a href="identifier-index-R.html">R</a>
 <a href="identifier-index-S.html">S</a>
 <a href="identifier-index-T.html">T</a>
 <a href="identifier-index-U.html">U</a>
 <a href="identifier-index-V.html">V</a>
 <a href="identifier-index-W.html">W</a>
 <a href="identifier-index-X.html">X</a>
 <a href="identifier-index-Y.html">Y</a>
  Z
 <a href="identifier-index-_.html">_</a>
]
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<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="V">V</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#v">v</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NBRF.ValSeq-module.html">ValSeq</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NBRF-module.html">Bio.NBRF</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.VerboseDict-class.html">VerboseDict</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#valid_block">valid_block</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate-module.html#value">value</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.VerboseList-class.html">VerboseList</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#valid_contents">valid_contents</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.XMLAttribute-class.html#verify">verify()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.POM.XMLAttribute-class.html">XMLAttribute</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#VALID_DATABASES">VALID_DATABASES</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.EUtils.MultiDict._BaseMultiDict-class.html" onclick="show_private();">_BaseMultiDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#verify_alphabet">verify_alphabet()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#valid_divisions">valid_divisions</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#verify_pattern">verify_pattern()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
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<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.NCBIDictionary-class.html#VALID_FORMATS">VALID_FORMATS</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank.NCBIDictionary-class.html">NCBIDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.BaseDB.DictLookup-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Mindy.BaseDB.DictLookup-class.html">DictLookup</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#version">version</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
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<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome.Organism-class.html#VALID_FORMATS">VALID_FORMATS</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Graphics.BasicChromosome.Organism-class.html">Organism</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.ExPASyDictionary-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Prosite.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#version">version</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#valid_locus_key">valid_locus_key</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Prosite.Prodoc.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#version">version()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html#valid_residue_characters">valid_residue_characters</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Saf.saf_format-module.html">Bio.Saf.saf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PubMed.Dictionary-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PubMed.Dictionary-class.html">Dictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#version">version()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Blast.NCBIStandalone._HeaderConsumer-class.html" onclick="show_private();">_HeaderConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#valid_residue_prefixes">valid_residue_prefixes</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.SwissProt.SProt.ExPASyDictionary-class.html">ExPASyDictionary</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#version">version()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#valid_residue_types">valid_residue_types</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config.Registry.Registry-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.config.Registry.Registry-class.html">Registry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#version">version()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html#valid_sequence_characters">valid_sequence_characters</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Saf.saf_format-module.html">Bio.Saf.saf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.BioSeqDatabase.BioSeqDatabase-class.html">BioSeqDatabase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#version_line">version_line</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.ValSeq-module.html#valid_sequence_dict">valid_sequence_dict</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NBRF.ValSeq-module.html">Bio.NBRF.ValSeq</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeqDatabase.DBServer-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="BioSQL.BioSeqDatabase.DBServer-class.html">DBServer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#version_suffix">version_suffix()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
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<td width="33%" class="link-index"><a href="Bio.Crystal.Chain-class.html#validate">validate()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Crystal.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.MartelAttributeList-class.html#values">values()</a><br />
<span class="index-where">(in&nbsp;<a href="Martel.Parser.MartelAttributeList-class.html">MartelAttributeList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#VERY_SMALL_NUMBER">VERY_SMALL_NUMBER</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
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<tr>
<td width="33%" class="link-index"><a href="Bio.Crystal.Chain-class.html#validate_element">validate_element()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Crystal.Chain-class.html">Chain</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Decode.ValueToken-class.html">ValueToken</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#viterbi">viterbi()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html">HiddenMarkovModel</a>)</span></td>
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<tr>
<td width="33%" class="link-index"><a href="Bio.Crystal-module.html#validate_key">validate_key()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Crystal-module.html">Bio.Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27.Vector-class.html">Vector</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#volume_issue">volume_issue()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ValidationError-class.html">ValidationError</a></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html">Vector'</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html">ValidationIncreaseStop</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.NeuralNetwork.StopTraining-module.html">Bio.NeuralNetwork.StopTraining</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#vector_to_axis">vector_to_axis()</a><br />
<span class="index-where">(in&nbsp;<a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
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