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<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="T">T</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_caret">t_caret()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test__add__">test__add__()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#time">time()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_close_paren">t_close_paren()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test__or__">test__or__()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support-module.html#time_file">time_file()</a><br />
<span class="index-where">(in <a href="Martel.test.support-module.html">Martel.test.support</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_close_paren">t_close_paren()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_alt">test_alt()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#timestamp">timestamp</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_colon">t_colon()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_any">test_any()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Date-class.html#timetuple">timetuple()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.Date-class.html">Date</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_comma">t_comma()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_assert">test_assert()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#title">title</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_comma">t_comma()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_at_beginning">test_at_beginning()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title">title()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html" onclick="show_private();">_AlignmentConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericScanner-class.html#t_default">t_default()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericScanner-class.html">GenericScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_at_end">test_at_end()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#title">title()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_dot">t_dot()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html">test_attrs</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#title">title()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_double_colon">t_double_colon()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_convert_re-module.html">test_convert_re</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#title">title()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_double_dot">t_double_dot()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_count">test_count()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#TITLE">TITLE()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_float">t_float()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_count_lines">test_count_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#title_abbreviation">title_abbreviation()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_functionname">t_functionname()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_count_lines">test_count_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#title_block">title_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_greater_than">t_greater_than()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_count_lines_lines">test_count_lines_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics.intelligenetics_format-module.html#title_line">title_line</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics.intelligenetics_format-module.html">Bio.IntelliGenetics.intelligenetics_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#t_info">t_info</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_DelimitedFields">test_DelimitedFields()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#TITLE_LINE">TITLE_LINE</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_integer">t_integer()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_delimiter-module.html">test_delimiter</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics._RecordConsumer-class.html#title_line">title_line()</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_less_than">t_less_than()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_Digits">test_Digits()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.MeltingTemp-module.html#Tm_staluc">Tm_staluc()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.MeltingTemp-module.html">Bio.SeqUtils.MeltingTemp</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_open_paren">t_open_paren()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html#test_docstring">test_docstring()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Time-module.html">Martel.test.test_Time</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Generic_dbutils-class.html#tname">tname()</a><br />
<span class="index-where">(in <a href="BioSQL.DBUtils.Generic_dbutils-class.html">Generic_dbutils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_open_paren">t_open_paren()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_dot">test_dot()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.To-class.html">To</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_pipe">t_pipe()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_end">test_end()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO-module.html#to_alignment">to_alignment()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_string">t_string()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_end_lines">test_end_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.FormattedSeq-class.html#to_circular">to_circular()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.FormattedSeq-class.html">FormattedSeq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_symbol">t_symbol()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_endswith">test_endswith()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.FormatConvert.FormatConverter-class.html#to_clustal">to_clustal()</a><br />
<span class="index-where">(in <a href="Bio.Align.FormatConvert.FormatConverter-class.html">FormatConverter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#t_unsigned_integer">t_unsigned_integer()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_endswith_errors">test_endswith_errors()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO-module.html#to_dict">to_dict()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#t_whitespace">t_whitespace()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_endswith_exhaustive">test_endswith_exhaustive()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.FormatConvert.FormatConverter-class.html#to_fasta">to_fasta()</a><br />
<span class="index-where">(in <a href="Bio.Align.FormatConvert.FormatConverter-class.html">FormatConverter</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#tab">tab</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_endswith_generic">test_endswith_generic()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#to_fasta">to_fasta()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#tab">tab</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_endswith_remainder">test_endswith_remainder()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Record.MultipleAlignment-class.html#to_generic">to_generic()</a><br />
<span class="index-where">(in <a href="Bio.Blast.Record.MultipleAlignment-class.html">MultipleAlignment</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.delimiter-module.html#tabformat">tabformat</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.delimiter-module.html">Martel.test.testformats.delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_endswith_SP">test_endswith_SP()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.FormattedSeq-class.html#to_linear">to_linear()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.FormattedSeq-class.html">FormattedSeq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#table">table</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_escape">test_escape()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.DSSP%27-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.PDB.DSSP%27-module.html">Bio.PDB.DSSP'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#table">table</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_everything">test_everything()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.FragmentMapper%27-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.PDB.FragmentMapper%27-module.html">Bio.PDB.FragmentMapper'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#table_entry">table_entry</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_everything">test_everything()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.HSExposure-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.PDB.HSExposure-module.html">Bio.PDB.HSExposure</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#table_entry">table_entry</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_everything_lines">test_everything_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.PDB.PSEA-module.html">Bio.PDB.PSEA</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#table_entry">table_entry</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html#test_expand">test_expand()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Time-module.html">Martel.test.test_Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.ResidueDepth%27-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.PDB.ResidueDepth%27-module.html">Bio.PDB.ResidueDepth'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.speclist-module.html#TABLE_HEADER">TABLE_HEADER</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.speclist-module.html">Bio.expressions.swissprot.speclist</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html">test_Expression</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureAlignment%27-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureAlignment%27-module.html">Bio.PDB.StructureAlignment'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Search.TableInfo-class.html">TableInfo</a><br />
<span class="index-where">(in <a href="Bio.Search-module.html">Bio.Search</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_fasta">test_fasta()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf-module.html#to_one_letter_code">to_one_letter_code</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf-module.html">Bio.SCOP.Raf</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#tag">tag</a><br />
<span class="index-where">(in <a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support-module.html#test_file">test_file()</a><br />
<span class="index-where">(in <a href="Martel.test.support-module.html">Martel.test.support</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#to_string">to_string()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.TaggingConsumer-class.html">TaggingConsumer</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_LAX-module.html#test_filter">test_filter()</a><br />
<span class="index-where">(in <a href="Martel.test.test_LAX-module.html">Martel.test.test_LAX</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#to_table">to_table</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.listfns-module.html#take">take()</a><br />
<span class="index-where">(in <a href="Bio.listfns-module.html">Bio.listfns</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_Float">test_Float()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#to_table">to_table</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.listfns-module.html#take_byfn">take_byfn()</a><br />
<span class="index-where">(in <a href="Bio.listfns-module.html">Bio.listfns</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Generate-module.html">test_Generate</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Domain-class.html#toClaRecord">toClaRecord()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Domain-class.html">Domain</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_group">test_group()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Domain-class.html#toDesRecord">toDesRecord()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Domain-class.html">Domain</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_group_names">test_group_names()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Node-class.html#toDesRecord">toDesRecord()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_groupref">test_groupref()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#ToEol">ToEol()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer1">test_header_footer1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Node-class.html#toHieRecord">toHieRecord()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Node-class.html">Node</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer1">test_header_footer1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Decode.Token-class.html">Token</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer2">test_header_footer2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.Token-class.html">Token</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer2">test_header_footer2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.Token-class.html">Token</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#tan">tan</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer3">test_header_footer3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeScanner-class.html#tokenize">tokenize()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeScanner-class.html">DecodeScanner</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer3">test_header_footer3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationScanner-class.html#tokenize">tokenize()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationScanner-class.html">LocationScanner</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer4">test_header_footer4()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericScanner-class.html#tokenize">tokenize()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericScanner-class.html">GenericScanner</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer4">test_header_footer4()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Tokenizer-class.html">Tokenizer</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer5">test_header_footer5()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.tolower-class.html">tolower</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer5">test_header_footer5()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.Seq-class.html#tomutable">tomutable()</a><br />
<span class="index-where">(in <a href="Bio.Seq.Seq-class.html">Seq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer6">test_header_footer6()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.ThinClient-module.html#TOOL">TOOL</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ThinClient-module.html">Bio.EUtils.ThinClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer6">test_header_footer6()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#ToSep">ToSep()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#tanh">tanh</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test_header_footer7">test_header_footer7()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html#toseq">toseq()</a><br />
<span class="index-where">(in <a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.Feature-class.html#target_location">target_location()</a><br />
<span class="index-where">(in <a href="Bio.GFF.Feature-class.html">Feature</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer7">test_header_footer7()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#tostring">tostring()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#taxonomy">taxonomy</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_header_footer8">test_header_footer8()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#tostring">tostring()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#taxonomy">taxonomy()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_header_footer_parser">test_header_footer_parser()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.Prosite-class.html#tostring">tostring()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.Prosite-class.html">Prosite</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#taxonomy">taxonomy()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf1">test_hf1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html#tostring">tostring()</a><br />
<span class="index-where">(in <a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#taxonomy_block">taxonomy_block</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf2">test_hf2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.Seq-class.html#tostring">tostring()</a><br />
<span class="index-where">(in <a href="Bio.Seq.Seq-class.html">Seq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#taxonomy_contents_line">taxonomy_contents_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf3">test_hf3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.BioSeq.DBSeq-class.html#tostring">tostring()</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeq.DBSeq-class.html">DBSeq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#taxonomy_contents_multiline">taxonomy_contents_multiline</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf4">test_hf4()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.speclist-module.html#TOTAL_CODES">TOTAL_CODES</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.speclist-module.html">Bio.expressions.swissprot.speclist</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#taxonomy_id">taxonomy_id()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf5">test_hf5()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#total_weight">total_weight()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#taxonomy_id">taxonomy_id()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf6">test_hf6()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#total_weight_range">total_weight_range()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#taxonomy_key_line">taxonomy_key_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf7">test_hf7()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.toupper-class.html">toupper</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#taxonomy_tag">taxonomy_tag</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_hf8">test_hf8()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Tournament-module.html">Tournament</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection-module.html">Bio.GA.Selection</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#TAXSET">TAXSET</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html">test_Iterator</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Tournament.TournamentSelection-class.html">TournamentSelection</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection.Tournament-module.html">Bio.GA.Selection.Tournament</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastn">tblastn</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html">test_IterParser</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#tr">tr()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastn">tblastn</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_LAX-module.html">test_LAX</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Chain-class.html#trace">trace()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Chain-class.html">Chain</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#tblastn">tblastn</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#test_list">test_list</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#trace_array_max_index">trace_array_max_index()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastn_appheader">tblastn_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_literal">test_literal()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#trace_array_min_index">trace_array_min_index()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastn_appheader">tblastn_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html">test_macros</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#trace_peak_area_ratio">trace_peak_area_ratio()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastn_ending">tblastn_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_make_iterparsers1">test_make_iterparsers1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#track_position">track_position()</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastn_hsp_header">tblastn_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_make_iterparsers2">test_make_iterparsers2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#trailer_line">trailer_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastn_hsp_header">tblastn_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_max_repeat">test_max_repeat()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer.BaumWelchTrainer-class.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.HMM.Trainer.BaumWelchTrainer-class.html">BaumWelchTrainer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastn_identities">tblastn_identities</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_minimize">test_minimize()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer.KnownStateTrainer-class.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.HMM.Trainer.KnownStateTrainer-class.html">KnownStateTrainer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastn_score">tblastn_score</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_missing_end1">test_missing_end1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastn_score">tblastn_score</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_missing_end2">test_missing_end2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastn_strand">tblastn_strand</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_missing_end3">test_missing_end3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastx">tblastx</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_multi">test_multi()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html">BasicNetwork</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#tblastx">tblastx</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_nocase">test_nocase()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#train">train()</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastx_appheader">tblastx_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_nodes">test_nodes()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#train_bw">train_bw()</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#tblastx_appheader">tblastx_appheader</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_none">test_none()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#train_visible">train_visible()</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastx_ending">tblastx_ending</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_nothing">test_nothing()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer-module.html">Trainer</a><br />
<span class="index-where">(in <a href="Bio.HMM-module.html">Bio.HMM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastx_frame">tblastx_frame</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_nothing">test_nothing()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Training-module.html">Training</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork-module.html">Bio.NeuralNetwork</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#tblastx_hsp_header">tblastx_hsp_header</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_nothing_lines">test_nothing_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Training.TrainingExample-class.html">TrainingExample</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Training-module.html">Bio.NeuralNetwork.Training</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.ReseekFile.ReseekFile-class.html#tell">tell()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ReseekFile.ReseekFile-class.html">ReseekFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_null_op">test_null_op()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.Trainer.TrainingSequence-class.html">TrainingSequence</a><br />
<span class="index-where">(in <a href="Bio.HMM.Trainer-module.html">Bio.HMM.Trainer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.File.UndoHandle-class.html#tell">tell()</a><br />
<span class="index-where">(in <a href="Bio.File.UndoHandle-class.html">UndoHandle</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html">test_optimize</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications.TranalignCommandline-class.html">TranalignCommandline</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Applications-module.html">Bio.Emboss.Applications</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Tokenizer-class.html#tell">tell()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.Tokenizer-class.html">Tokenizer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html">test_Parser</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Transcribe-module.html">Transcribe</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome.TelomereSegment-class.html">TelomereSegment</a><br />
<span class="index-where">(in <a href="Bio.Graphics.BasicChromosome-module.html">Bio.Graphics.BasicChromosome</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_ParseRecords-module.html">test_ParseRecords</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Transcribe.Transcribe-class.html">Transcribe</a><br />
<span class="index-where">(in <a href="Bio.Transcribe-module.html">Bio.Transcribe</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#temperature">temperature()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal-module.html#test_path">test_path</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq-module.html#transcribe">transcribe()</a><br />
<span class="index-where">(in <a href="Bio.Seq-module.html">Bio.Seq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.TempFile-class.html">TempFile</a></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_Punctuation">test_Punctuation()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Transcribe.Transcribe-class.html#transcribe">transcribe()</a><br />
<span class="index-where">(in <a href="Bio.Transcribe.Transcribe-class.html">Transcribe</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html">Template</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal-module.html">Bio.PopGen.SimCoal</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_reader_parser">test_reader_parser()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#transcribe">transcribe()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Term-class.html">Term</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.ReseekFile-module.html#test_reads">test_reads()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ReseekFile-module.html">Bio.EUtils.ReseekFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html">transfac</a><br />
<span class="index-where">(in <a href="Bio.expressions-module.html">Bio.expressions</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Term-class.html">Term</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test_record_parser">test_record_parser()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#transform">transform()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.TermCount-class.html">TermCount</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_record_parser">test_record_parser()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#transformation">transformation()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTBuilder-class.html#terminal">terminal()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTBuilder-class.html">GenericASTBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html">test_RecordReader</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#transitions_from">transitions_from()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.HiddenMarkovModel-class.html">HiddenMarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#terminal_gap_to_missing">terminal_gap_to_missing()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html">test_RecordReader2</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate-module.html">Translate</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#terminator">terminator()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_ri1">test_ri1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.Feature-class.html#translate">translate()</a><br />
<span class="index-where">(in <a href="Bio.GFF.Feature-class.html">Feature</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#terminator">terminator()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_ri2">test_ri2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.FeatureAggregate-class.html#translate">translate()</a><br />
<span class="index-where">(in <a href="Bio.GFF.FeatureAggregate-class.html">FeatureAggregate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.TermSet-class.html">TermSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test_ri3">test_ri3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq-module.html#translate">translate()</a><br />
<span class="index-where">(in <a href="Bio.Seq-module.html">Bio.Seq</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test-module.html">test</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_same_tag">test_same_tag()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#translate">translate()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_seq">test_seq()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate.Translator-class.html#translate">translate()</a><br />
<span class="index-where">(in <a href="Bio.Translate.Translator-class.html">Translator</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.ReseekFile-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ReseekFile-module.html">Bio.EUtils.ReseekFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test_single">test_single()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#translate">translate()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.support.Storage-class.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.support.Storage-class.html">Storage</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_Spaces">test_Spaces()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate.Translator-class.html#translate_to_stop">translate_to_stop()</a><br />
<span class="index-where">(in <a href="Bio.Translate.Translator-class.html">Translator</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_start">test_start()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#translate_to_stop">translate_to_stop()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_start_lines">test_start_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.Translation-class.html">Translation</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Generate-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Generate-module.html">Martel.test.test_Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_startswith">test_startswith()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.TranslationError-class.html">TranslationError</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_IterParser-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_IterParser-module.html">Martel.test.test_IterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_startswith_errors">test_startswith_errors()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.TranslationSet-class.html">TranslationSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_startswith_exhaustive">test_startswith_exhaustive()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.TranslationStack-class.html">TranslationStack</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_LAX-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_LAX-module.html">Martel.test.test_LAX</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_startswith_generic">test_startswith_generic()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Translate.Translator-class.html">Translator</a><br />
<span class="index-where">(in <a href="Bio.Translate-module.html">Bio.Translate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_ParseRecords-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_ParseRecords-module.html">Martel.test.test_ParseRecords</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_startswith_remainder">test_startswith_remainder()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#transliterated_title">transliterated_title()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser-module.html">Martel.test.test_Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_startswith_SP">test_startswith_SP()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html">Tree</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees-module.html">Bio.Nexus.Trees</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_str">test_str()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Cluster.Record-class.html#treecluster">treecluster()</a><br />
<span class="index-where">(in <a href="Bio.Cluster.Record-class.html">Record</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support-module.html#test_string">test_string()</a><br />
<span class="index-where">(in <a href="Martel.test.support-module.html">Martel.test.support</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.TreeError-class.html">TreeError</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees-module.html">Bio.Nexus.Trees</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Time-module.html">Martel.test.test_Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html">test_swissprot38</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees-module.html">Trees</a><br />
<span class="index-where">(in <a href="Bio.Nexus-module.html">Bio.Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs-module.html">Martel.test.test_attrs</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html#test_syntax">test_syntax()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Time-module.html">Martel.test.test_Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.triefind-module.html">triefind</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_convert_re-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_convert_re-module.html">Martel.test.test_convert_re</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html#test_terms">test_terms()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Time-module.html">Martel.test.test_Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#trim">trim()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_delimiter-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_delimiter-module.html">Martel.test.test_delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html">test_Time</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html#True">True</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM-module.html">Bio.EUtils.POM</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Time-module.html#test_times">test_times()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Time-module.html">Martel.test.test_Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_ToEol">test_ToEol()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#test">test()</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_ToSep">test_ToSep()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test1">test1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_Unprintable">test_Unprintable()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_LAX-module.html#test1">test1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_LAX-module.html">Martel.test.test_LAX</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_until">test_until()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test1">test1()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader2-module.html#test_until">test_until()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader2-module.html">Martel.test.test_RecordReader2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test10">test10()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#test_until_lines">test_until_lines()</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test11">test11()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Expression-module.html#test_valid_names">test_valid_names()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Expression-module.html">Martel.test.test_Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#true_divide">true_divide</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test12">test12()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros-module.html#test_Word">test_Word()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros-module.html">Martel.test.test_macros</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#tune">tune()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test13">test13()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats-module.html">testformats</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#turn3">turn3</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test14">test14()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.Text-class.html">Text</a></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#turn4">turn4</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test15">test15()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#text">text</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#turn5">turn5</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test16">test16()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_ParseRecords-module.html#text">text</a><br />
<span class="index-where">(in <a href="Martel.test.test_ParseRecords-module.html">Martel.test.test_ParseRecords</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#two_mat_DJS">two_mat_DJS()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test17">test17()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#text">text()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#two_mat_relative_entropy">two_mat_relative_entropy()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test18">test18()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc._RecordConsumer-class.html#text">text()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.TwoBound-class.html">TwoBound</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test19">test19()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Gobase._RecordConsumer-class.html#text_field">text_field()</a><br />
<span class="index-where">(in <a href="Bio.Gobase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html">TwoCrossover</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover.GeneralPoint-module.html">Bio.GA.Crossover.GeneralPoint</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test2">test2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.TextLikeMixin-class.html">TextLikeMixin</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry-module.html">Bio.config.DBRegistry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.TwoCuts-class.html">TwoCuts</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test2">test2()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.ThinClient-module.html">ThinClient</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.TwoPoint-module.html">TwoPoint</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover-module.html">Bio.GA.Crossover</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test20">test20()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.ThinClient.ThinClient-class.html">ThinClient</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ThinClient-module.html">Bio.EUtils.ThinClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.TwoPoint.TwoPointCrossover-class.html">TwoPointCrossover</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover.TwoPoint-module.html">Bio.GA.Crossover.TwoPoint</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test3">test3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#this_module">this_module</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.Integer-class.html#type">type</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.Integer-class.html">Integer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test3">test3()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.pairwise2-module.html#this_module">this_module</a><br />
<span class="index-where">(in <a href="Bio.pairwise2-module.html">Bio.pairwise2</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.Symbol-class.html#type">type</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.Symbol-class.html">Symbol</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test4">test4()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#three_prime">three_prime()</a><br />
<span class="index-where">(in <a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.UnsignedInteger-class.html#type">type</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.UnsignedInteger-class.html">UnsignedInteger</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test4">test4()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#three_prime_range">three_prime_range()</a><br />
<span class="index-where">(in <a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#type_metabolite">type_metabolite</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_Iterator-module.html#test5">test5()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Iterator-module.html">Martel.test.test_Iterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide-module.html#three_to_index">three_to_index()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.TypeCompiler-class.html">TypeCompiler</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test5">test5()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide-module.html#three_to_one">three_to_one()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction_Dictionary-module.html#typedict">typedict</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction_Dictionary-module.html">Bio.Restriction.Restriction_Dictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test6">test6()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.ThreeLetterProtein-class.html">ThreeLetterProtein</a></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#typedict">typedict</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test7">test7()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#threshold">threshold()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTTraversal-class.html#typestring">typestring()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTTraversal-class.html">GenericASTTraversal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test8">test8()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Compass._Consumer-class.html#threshold">threshold()</a><br />
<span class="index-where">(in <a href="Bio.Compass._Consumer-class.html" onclick="show_private();">_Consumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#typestring">typestring()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize-module.html#test9">test9()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize-module.html">Martel.test.test_optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Time-module.html">Time</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"> </td>
</tr>
</table>
</td></tr>
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