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<h1 class="epydoc">Identifier Index</h1>
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[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
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<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
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<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
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<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="S">S</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#s">s</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_transition_score">set_transition_score()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#start_hit">start_hit()</a><br />
<span class="index-where">(in <a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#s1">s1</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#set_type">set_type()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#start_hit_description">start_hit_description()</a><br />
<span class="index-where">(in <a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#s1_info">s1_info</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#set_weight">set_weight()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html">AbstractLayer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#start_hit_description_block">start_hit_description_block()</a><br />
<span class="index-where">(in <a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#s2">s2</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#set_weight">set_weight()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html">OutputLayer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#start_hit_length">start_hit_length()</a><br />
<span class="index-where">(in <a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#s2_info">s2_info</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.DispatchHandler-class.html#setCharacterSaver">setCharacterSaver()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.DispatchHandler-class.html">DispatchHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html#start_hsp">start_hsp()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html" onclick="show_private();">_HSPConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#s3">s3</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#setdefault">setdefault()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp-class.html#start_hsp">start_hsp()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp-class.html">Handle_hsp</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf-module.html">Saf</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ObjectParserHandler-class.html#setDocumentLocator">setDocumentLocator()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ObjectParserHandler-class.html">ObjectParserHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp">start_hsp()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html">saf_format</a><br />
<span class="index-where">(in <a href="Bio.Saf-module.html">Bio.Saf</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Generate.SetGroupValue-class.html">SetGroupValue</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp-class.html#start_hsp_frame">start_hsp_frame()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp-class.html">Handle_hsp</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.saf_format-module.html#saf_record">saf_record</a><br />
<span class="index-where">(in <a href="Bio.Saf.saf_format-module.html">Bio.Saf.saf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.ParserException-class.html#setLocation">setLocation()</a><br />
<span class="index-where">(in <a href="Martel.Parser.ParserException-class.html">ParserException</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign">start_hsp_seqalign()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.mathfns-module.html#safe_exp">safe_exp()</a><br />
<span class="index-where">(in <a href="Bio.mathfns-module.html">Bio.mathfns</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#setnode">setnode()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_homology_seq">start_hsp_seqalign_homology_seq()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#safe_int">safe_int()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.setup-module.html">setup</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_query_end">start_hsp_seqalign_query_end()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config._support-module.html#safe_load_module">safe_load_module()</a><br />
<span class="index-where">(in <a href="Bio.config._support-module.html">Bio.config._support</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.setup-module.html">setup</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_query_leader">start_hsp_seqalign_query_leader()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.mathfns-module.html#safe_log">safe_log()</a><br />
<span class="index-where">(in <a href="Bio.mathfns-module.html">Bio.mathfns</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.ErrorProblem-class.html#severity">severity</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.ErrorProblem-class.html">ErrorProblem</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_query_name">start_hsp_seqalign_query_name()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.mathfns-module.html#safe_log2">safe_log2()</a><br />
<span class="index-where">(in <a href="Bio.mathfns-module.html">Bio.mathfns</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.FieldNotFound-class.html#severity">severity</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.FieldNotFound-class.html">FieldNotFound</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_query_seq">start_hsp_seqalign_query_seq()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport-module.html#safe_peekline">safe_peekline()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.WarningProblem-class.html#severity">severity</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes.WarningProblem-class.html">WarningProblem</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_query_start">start_hsp_seqalign_query_start()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport-module.html#safe_readline">safe_readline()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SGMLExtractor-module.html">SGMLExtractor</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_subject_end">start_hsp_seqalign_subject_end()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.General.SafeFitnessCrossover-class.html">SafeFitnessCrossover</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover.General-module.html">Bio.GA.Crossover.General</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SGMLExtractor.SGMLExtractor-class.html">SGMLExtractor</a><br />
<span class="index-where">(in <a href="Bio.SGMLExtractor-module.html">Bio.SGMLExtractor</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_subject_name">start_hsp_seqalign_subject_name()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.General.SafeFitnessMutation-class.html">SafeFitnessMutation</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation.General-module.html">Bio.GA.Mutation.General</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SGMLExtractor.SGMLExtractorHandle-class.html">SGMLExtractorHandle</a><br />
<span class="index-where">(in <a href="Bio.SGMLExtractor-module.html">Bio.SGMLExtractor</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_subject_seq">start_hsp_seqalign_subject_seq()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#safename">safename()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.File.SGMLHandle-class.html">SGMLHandle</a></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp_seqalign-class.html#start_hsp_seqalign_subject_start">start_hsp_seqalign_subject_start()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp_seqalign-class.html">Handle_hsp_seqalign</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_delimiter-module.html#sample_dir">sample_dir</a><br />
<span class="index-where">(in <a href="Martel.test.test_delimiter-module.html">Martel.test.test_delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.File.SGMLStripper-class.html">SGMLStripper</a></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp-class.html#start_hsp_strand">start_hsp_strand()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp-class.html">Handle_hsp</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Cluster.Record-class.html#save">save()</a><br />
<span class="index-where">(in <a href="Bio.Cluster.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.SGMLStrippingConsumer-class.html">SGMLStrippingConsumer</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport-module.html">Bio.ParserSupport</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_hsp-class.html#start_hsp_value">start_hsp_value()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_hsp-class.html">Handle_hsp</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#save">save()</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsageIndices-module.html#SharpEcoliIndex">SharpEcoliIndex</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsageIndices-module.html">Bio.SeqUtils.CodonUsageIndices</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_i">start_i()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.PDBIO-class.html#save">save()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBIO%27.PDBIO-class.html">PDBIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.ShortQueryBlastError-class.html">ShortQueryBlastError</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#start_i">start_i()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.DispatchHandler-class.html#save_characters">save_characters()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.DispatchHandler-class.html">DispatchHandler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#show_codes">show_codes()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.KeyWList._ListConsumer-class.html#start_keywords">start_keywords()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.KeyWList._ListConsumer-class.html" onclick="show_private();">_ListConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Dispatcher-class.html#save_characters">save_characters()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.Dispatcher-class.html">Dispatcher</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#show_only_between">show_only_between()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_li">start_li()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath.GrabXPathNodes-class.html#save_info">save_info()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath.GrabXPathNodes-class.html">GrabXPathNodes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Signature-module.html">Signature</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene-module.html">Bio.NeuralNetwork.Gene</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#start_li">start_li()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#save_key">save_key()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Signature.SignatureCoder-class.html">SignatureCoder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Signature-module.html">Bio.NeuralNetwork.Gene.Signature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#start_locus_line">start_locus_line()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.File.UndoHandle-class.html#saveline">saveline()</a><br />
<span class="index-where">(in <a href="Bio.File.UndoHandle-class.html">UndoHandle</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html">SignatureFinder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Signature-module.html">Bio.NeuralNetwork.Gene.Signature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_ol">start_ol()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html#sbjct">sbjct()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html" onclick="show_private();">_HSPConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#sim">sim()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#start_parameters">start_parameters()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._ParametersConsumer-class.html" onclick="show_private();">_ParametersConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#scale_segment_value">scale_segment_value()</a><br />
<span class="index-where">(in <a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html">ChromosomeCounts</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal-module.html">SimCoal</a><br />
<span class="index-where">(in <a href="Bio.PopGen-module.html">Bio.PopGen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#start_phenotype_block">start_phenotype_block()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html">ScaledDPAlgorithms</a><br />
<span class="index-where">(in <a href="Bio.HMM.DynamicProgramming-module.html">Bio.HMM.DynamicProgramming</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Async.SimCoalCache-class.html">SimCoalCache</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Async-module.html">Bio.PopGen.SimCoal.Async</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop._RecordConsumer-class.html#start_pop">start_pop()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#scan">scan()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html">SimCoalCache</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Cache-module.html">Bio.PopGen.SimCoal.Cache</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#start_primer">start_primer</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser-module.html#scan">scan()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Controller.SimCoalController-class.html">SimCoalController</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Controller-module.html">Bio.PopGen.SimCoal.Controller</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html#start_primer">start_primer()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html" onclick="show_private();">_Primer3RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite-module.html#scan_sequence_expasy">scan_sequence_expasy()</a><br />
<span class="index-where">(in <a href="Bio.Prosite-module.html">Bio.Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.Simple-module.html">Simple</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation-module.html">Bio.GA.Mutation</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_query_description">start_query_description()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Scanner-module.html">Scanner</a><br />
<span class="index-where">(in <a href="Bio.AlignAce-module.html">Bio.AlignAce</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#SIMPLE">SIMPLE</a><br />
<span class="index-where">(in <a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html">MMCIF2Dict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_query_description_block">start_query_description_block()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner-module.html">Scanner</a><br />
<span class="index-where">(in <a href="Bio.GenBank-module.html">Bio.GenBank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#Simple">Simple()</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_query_size">start_query_size()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#scanprosite1">scanprosite1()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#Simple">Simple()</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_range_contents_multiline">start_range_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#scanprosite1">scanprosite1()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SimpleFinisher-class.html">SimpleFinisher</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_range_tag">start_range_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema-module.html">Schema</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene-module.html">Bio.NeuralNetwork.Gene</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html">SimpleIndexer</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord-module.html">Bio.Mindy.SimpleSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.Schema-class.html">Schema</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#SimpleRecordFilter">SimpleRecordFilter()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist._RecordConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.FDist._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SchemaCoder-class.html">SchemaCoder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord-module.html">SimpleSeqRecord</a><br />
<span class="index-where">(in <a href="Bio.Mindy-module.html">Bio.Mindy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop._RecordConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html">SchemaDNAAlphabet</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Multicall-class.html#simplify">simplify()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.Multicall-class.html">Multicall</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc._RecordConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html">SchemaFactory</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html">SchemaFinder</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Schema-module.html">Bio.NeuralNetwork.Gene.Schema</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html">SCOP</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Scop-class.html">Scop</a><br />
<span class="index-where">(in <a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html#start_record">start_record()</a><br />
<span class="index-where">(in <a href="Bio.builders.SeqRecord.sequence.BuildSeqRecord-class.html">BuildSeqRecord</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.WWW.SCOP-module.html">SCOP</a><br />
<span class="index-where">(in <a href="Bio.WWW-module.html">Bio.WWW</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_reference_contents_multiline">start_reference_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Score-class.html">Score</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_representative_contents_multiline">start_representative_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#score">score</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_representative_tag">start_representative_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html#score">score()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html" onclick="show_private();">_HSPConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Saf._RecordConsumer-class.html#start_saf_record">start_saf_record()</a><br />
<span class="index-where">(in <a href="Bio.Saf._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#score_hit">score_hit()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#sin">sin</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_info-class.html#start_search_parameter">start_search_parameter()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_info-class.html">Handle_search_info</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Compass._Consumer-class.html#scores">scores()</a><br />
<span class="index-where">(in <a href="Bio.Compass._Consumer-class.html" onclick="show_private();">_Consumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#single_comment">single_comment</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_info-class.html#start_search_statistic">start_search_statistic()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_info-class.html">Handle_search_info</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#scramble">scramble()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#single_comment">single_comment</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_table-class.html#start_search_table">start_search_table()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_table-class.html">Handle_search_table</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Search-module.html">Search</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#single_comment">single_comment</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_table-class.html#start_search_table_description">start_search_table_description()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_table-class.html">Handle_search_table</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Search.Search-class.html">Search</a><br />
<span class="index-where">(in <a href="Bio.Search-module.html">Bio.Search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.Segment-class.html#single_feature">single_feature()</a><br />
<span class="index-where">(in <a href="Bio.GFF.Segment-class.html">Segment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_table-class.html#start_search_table_entry">start_search_table_entry()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_table-class.html">Handle_search_table</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.Search-module.html">Search</a><br />
<span class="index-where">(in <a href="Bio.builders-module.html">Bio.builders</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet-module.html#single_letter_alphabet">single_letter_alphabet</a><br />
<span class="index-where">(in <a href="Bio.Alphabet-module.html">Bio.Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_table-class.html#start_search_table_value">start_search_table_value()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_table-class.html">Handle_search_table</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search-module.html">search</a><br />
<span class="index-where">(in <a href="Bio.builders.Search-module.html">Bio.builders.Search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#single_primer_line">single_primer_line</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#start_sequence">start_sequence()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html">search</a><br />
<span class="index-where">(in <a href="Bio.formatdefs-module.html">Bio.formatdefs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html#single_primer_line">single_primer_line()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html" onclick="show_private();">_Primer3RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_sequence-class.html#start_sequence">start_sequence()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_sequence-class.html">Handle_sequence</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.search-module.html#search">search</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.search-module.html">Bio.formatdefs.search</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.SingleLetterAlphabet-class.html">SingleLetterAlphabet</a></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_sequence-class.html#start_sequence_block">start_sequence_block()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_sequence-class.html">Handle_sequence</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.DBIdsClient-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient.DBIdsClient-class.html">DBIdsClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.Point.SinglePointCrossover-class.html">SinglePointCrossover</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover.Point-module.html">Bio.GA.Crossover.Point</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_sequence_contents_multiline">start_sequence_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.HistoryClient-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient.HistoryClient-class.html">HistoryClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Mutation.Simple.SinglePositionMutation-class.html">SinglePositionMutation</a><br />
<span class="index-where">(in <a href="Bio.GA.Mutation.Simple-module.html">Bio.GA.Mutation.Simple</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_sequence_tag">start_sequence_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eInfo_020511.SingleToken-class.html">SingleToken</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eInfo_020511-module.html">Bio.EUtils.DTDs.eInfo_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_source_contents_multiline">start_source_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.NeighborSearch.NeighborSearch-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.PDB.NeighborSearch.NeighborSearch-class.html">NeighborSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_source_tag">start_source_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.Prosite-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.Prosite-class.html">Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_status_contents_multiline">start_status_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.AbstractCut-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.AbstractCut-class.html">AbstractCut</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_status_tag">start_status_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#start_sub">start_sub()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#search">search()</a><br />
<span class="index-where">(in <a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_table">start_table()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#search_accum_weight">search_accum_weight()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_table">start_table()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.NeighborSearch.NeighborSearch-class.html#search_all">search_all()</a><br />
<span class="index-where">(in <a href="Bio.PDB.NeighborSearch.NeighborSearch-class.html">NeighborSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_table_entry">start_table_entry()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTree-class.html#search_center_radius">search_center_radius()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.CKDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#sinh">sinh</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_taxonomy_contents_multiline">start_taxonomy_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PubMed-module.html#search_for">search_for()</a><br />
<span class="index-where">(in <a href="Bio.PubMed-module.html">Bio.PubMed</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#sink">sink()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_taxonomy_tag">start_taxonomy_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_header">search_header()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#sink_interactions">sink_interactions()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_td">start_td()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#search_instances">search_instances()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#SITE_FREQUENCY_LINE">SITE_FREQUENCY_LINE</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_td">start_td()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_parameter">search_parameter()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#six_frame_translations">six_frame_translations()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_th">start_th()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#search_pwm">search_pwm()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Alphabet-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Alphabet-class.html">Alphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_tr">start_tr()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_statistic">search_statistic()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.HPModel-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced.HPModel-class.html">HPModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_ul">start_ul()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_table">search_table()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy10-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy10-class.html">Murphy10</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#start_ul">start_ul()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_table_description">search_table_description()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy15-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy15-class.html">Murphy15</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.Async.Local.Local-class.html#start_work">start_work()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.Async.Local.Local-class.html">Local</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_table_entry">search_table_entry()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy4-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy4-class.html">Murphy4</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ObjectParserHandler-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ObjectParserHandler-class.html">ObjectParserHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#search_table_value">search_table_value()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.Murphy8-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced.Murphy8-class.html">Murphy8</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#search_taxon">search_taxon()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.PC5-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced.PC5-class.html">PC5</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath.GrabXPathNodes-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath.GrabXPathNodes-class.html">GrabXPathNodes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.SearchResult-class.html">SearchResult</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.SingleLetterAlphabet-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.SingleLetterAlphabet-class.html">SingleLetterAlphabet</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Saf._RecordConsumer-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Bio.Saf._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#secondary_id">secondary_id</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.ThreeLetterProtein-class.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.ThreeLetterProtein-class.html">ThreeLetterProtein</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.ConvertHandler-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.ConvertHandler-class.html">ConvertHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html#secondary_key_names">secondary_key_names()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html">BaseSeqRecordIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#size">size</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Dispatcher-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.Dispatcher-class.html">Dispatcher</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html#secondary_key_names">secondary_key_names()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html">FunctionIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelRecord-class.html#size">size()</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile.CelRecord-class.html">CelRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Iterator.StoreEvents-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.Iterator.StoreEvents-class.html">StoreEvents</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html#secondary_key_names">secondary_key_names()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html">SimpleIndexer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#size">size()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.LAX.LAX-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.LAX.LAX-class.html">LAX</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#secondary_source_id">secondary_source_id()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#size">size()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support.CheckGood-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.test.support.CheckGood-class.html">CheckGood</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#secondary_structure_fraction">secondary_structure_fraction()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.RecordReader-module.html#SIZEHINT">SIZEHINT</a><br />
<span class="index-where">(in <a href="Martel.RecordReader-module.html">Martel.RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support.Dump-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.test.support.Dump-class.html">Dump</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.SecondaryNamespace-class.html">SecondaryNamespace</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB-module.html">Bio.Mindy.BerkeleyDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.optimize-module.html#skip_empty_group">skip_empty_group()</a><br />
<span class="index-where">(in <a href="Martel.optimize-module.html">Martel.optimize</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs.GrabElements-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs.GrabElements-class.html">GrabElements</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.SecondaryNamespace-class.html">SecondaryNamespace</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.CharBuffer-class.html#skip_whitespace">skip_whitespace()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.CharBuffer-class.html">CharBuffer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros.Capture-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros.Capture-class.html">Capture</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Alphabet.SecondaryStructure-class.html">SecondaryStructure</a></td>
<td width="33%" class="link-index"><a href="Martel-module.html#SkipLinesTo">SkipLinesTo()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_optimize.GetErrorPos-class.html#startDocument">startDocument()</a><br />
<span class="index-where">(in <a href="Martel.test.test_optimize.GetErrorPos-class.html">GetErrorPos</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.SecondaryTable-class.html">SecondaryTable</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.speclist-module.html#SkipLinesToNoEOL">SkipLinesToNoEOL()</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.speclist-module.html">Bio.expressions.swissprot.speclist</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIXML._XMLparser-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIXML._XMLparser-class.html" onclick="show_private();">_XMLparser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.ReseekFile.ReseekFile-class.html#seek">seek()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ReseekFile.ReseekFile-class.html">ReseekFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#SkipLinesUntil">SkipLinesUntil()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ObjectParserHandler-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ObjectParserHandler-class.html">ObjectParserHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.File.UndoHandle-class.html#seek">seek()</a><br />
<span class="index-where">(in <a href="Bio.File.UndoHandle-class.html">UndoHandle</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#small_indent_space">small_indent_space</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Entrez.Parser.DataHandler-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Bio.Entrez.Parser.DataHandler-class.html">DataHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Tokenizer-class.html#seek">seek()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse.Tokenizer-class.html">Tokenizer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#smprint">smprint()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath.GrabXPathNodes-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath.GrabXPathNodes-class.html">GrabXPathNodes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.Segment-class.html">Segment</a><br />
<span class="index-where">(in <a href="Bio.GFF-module.html">Bio.GFF</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Cluster.Record-class.html#somcluster">somcluster()</a><br />
<span class="index-where">(in <a href="Bio.Cluster.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.EventGenerator-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport.EventGenerator-class.html">EventGenerator</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blocks-module.html#segment">segment</a><br />
<span class="index-where">(in <a href="Bio.expressions.blocks-module.html">Bio.expressions.blocks</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.DisorderedResidue-class.html#sort">sort()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Residue.DisorderedResidue-class.html">DisorderedResidue</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.ConvertHandler-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.ConvertHandler-class.html">ConvertHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#segment">segment</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Residue.Residue-class.html#sort">sort()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Residue.Residue-class.html">Residue</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch.Dispatcher-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch.Dispatcher-class.html">Dispatcher</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.Connection-class.html#segment">segment()</a><br />
<span class="index-where">(in <a href="Bio.GFF.Connection-class.html">Connection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.ACEFileRecord-class.html#sort">sort()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace.ACEFileRecord-class.html">ACEFileRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Iterator.StoreEvents-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.Iterator.StoreEvents-class.html">StoreEvents</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#segment">segment()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#source">source()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.LAX.LAX-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.LAX.LAX-class.html">LAX</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#segment">segment()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#source">source()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support.Dump-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.test.support.Dump-class.html">Dump</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blocks-module.html#segment_block">segment_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.blocks-module.html">Bio.expressions.blocks</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#source">source()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Parser.CountRecords-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.test.test_Parser.CountRecords-class.html">CountRecords</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#segment_line">segment_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#source">source()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_attrs.GrabElements-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.test.test_attrs.GrabElements-class.html">GrabElements</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CheckSum-module.html#seguid">seguid()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CheckSum-module.html">Bio.SeqUtils.CheckSum</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#source">source()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_delimiter.CatchFields-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.test.test_delimiter.CatchFields-class.html">CatchFields</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.Select-class.html">Select</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBIO%27-module.html">Bio.PDB.PDBIO'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#source_block">source_block</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_macros.Capture-class.html#startElement">startElement()</a><br />
<span class="index-where">(in <a href="Martel.test.test_macros.Capture-class.html">Capture</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Abstract.AbstractSelection-class.html#select">select()</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection.Abstract.AbstractSelection-class.html">AbstractSelection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#source_block">source_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelConsumer-class.html#StartIntensity">StartIntensity()</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile.CelConsumer-class.html">CelConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Diversity.DiversitySelection-class.html#select">select()</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection.Diversity.DiversitySelection-class.html">DiversitySelection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#source_contents_line">source_contents_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.stringfns-module.html#starts_with">starts_with()</a><br />
<span class="index-where">(in <a href="Bio.stringfns-module.html">Bio.stringfns</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html#select">select()</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html">RouletteWheelSelection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#source_contents_multiline">source_contents_multiline</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.RecordReader.StartsWith-class.html">StartsWith</a><br />
<span class="index-where">(in <a href="Martel.RecordReader-module.html">Martel.RecordReader</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection.Tournament.TournamentSelection-class.html#select">select()</a><br />
<span class="index-where">(in <a href="Bio.GA.Selection.Tournament.TournamentSelection-class.html">TournamentSelection</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#source_interactions">source_interactions()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics-module.html">Statistics</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#select_at_random">select_at_random()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#source_key_line">source_key_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.dnal.Statistics-class.html">Statistics</a><br />
<span class="index-where">(in <a href="Bio.Wise.dnal-module.html">Bio.Wise.dnal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel-module.html#select_names">select_names()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#source_tag">source_tag</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#statistics">statistics</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GA.Selection-module.html">Selection</a><br />
<span class="index-where">(in <a href="Bio.GA-module.html">Bio.GA</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceFile-class.html">SourceFile</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#status_block">status_block</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Selection-module.html">Selection</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen-module.html">sourcegen</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#status_contents_line">status_contents_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#SEMICOLONS">SEMICOLONS</a><br />
<span class="index-where">(in <a href="Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html">MMCIF2Dict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.sourcegen.SourceGen-class.html">SourceGen</a><br />
<span class="index-where">(in <a href="Bio.EUtils.sourcegen-module.html">Bio.EUtils.sourcegen</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#status_contents_multiline">status_contents_multiline</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#sentinel_line">sentinel_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_RecordReader-module.html#sp_sample">sp_sample</a><br />
<span class="index-where">(in <a href="Martel.test.test_RecordReader-module.html">Martel.test.test_RecordReader</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#status_key_line">status_key_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Separator-class.html">Separator</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.delimiter-module.html#spaceformat">spaceformat</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.delimiter-module.html">Martel.test.testformats.delimiter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#status_tag">status_tag</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Seq-module.html">Seq</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Spaces">Spaces()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Std-module.html">Std</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Seq.Seq-class.html">Seq</a><br />
<span class="index-where">(in <a href="Bio.Seq-module.html">Bio.Seq</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#spaces_line">spaces_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelRecord-class.html#stdevs">stdevs()</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile.CelRecord-class.html">CelRecord</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="BioSQL.BioSeq.DBSeqRecord-class.html#seq">seq</a><br />
<span class="index-where">(in <a href="BioSQL.BioSeq.DBSeqRecord-class.html">DBSeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#spaces_line">spaces_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler-module.html">StdHandler</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Expression.Seq-class.html">Seq</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html#span">span()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Std.StdTerm-class.html">StdTerm</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.Feature-class.html#seq">seq()</a><br />
<span class="index-where">(in <a href="Bio.GFF.Feature-class.html">Feature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark-module.html">spark</a><br />
<span class="index-where">(in <a href="Bio.Parsers-module.html">Bio.Parsers</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Evolver.SteadyStateEvolver-class.html">SteadyStateEvolver</a><br />
<span class="index-where">(in <a href="Bio.GA.Evolver-module.html">Bio.GA.Evolver</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GFF.FeatureAggregate-class.html#seq">seq()</a><br />
<span class="index-where">(in <a href="Bio.GFF.FeatureAggregate-class.html">FeatureAggregate</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#spec">spec</a><br />
<span class="index-where">(in <a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel-module.html#Seq">Seq()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SPECIAL_CHARS">SPECIAL_CHARS</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.System-class.html#stochiometry">stochiometry()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.System-class.html">System</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#seq3">seq3()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#SPECIAL_COMMANDS">SPECIAL_COMMANDS</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO-module.html">StockholmIO</a><br />
<span class="index-where">(in <a href="Bio.AlignIO-module.html">Bio.AlignIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#seq_indent">seq_indent</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#special_list">special_list()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO-module.html">StockholmIO</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.SeqDBRegistry-module.html#seqdb">seqdb</a><br />
<span class="index-where">(in <a href="Bio.config.SeqDBRegistry-module.html">Bio.config.SeqDBRegistry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#SPECIALCOMMENTS">SPECIALCOMMENTS</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO-module.html">Bio.AlignIO.StockholmIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.SeqDBRegistry-module.html">SeqDBRegistry</a><br />
<span class="index-where">(in <a href="Bio.config-module.html">Bio.config</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Network-class.html#species">species()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Network-class.html">Network</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO-module.html">Bio.SeqIO.StockholmIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.SeqDBRegistry.SeqDBRegistry-class.html">SeqDBRegistry</a><br />
<span class="index-where">(in <a href="Bio.config.SeqDBRegistry-module.html">Bio.config.SeqDBRegistry</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.Reaction-class.html#species">species()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Reaction-class.html">Reaction</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO-module.html">Bio.AlignIO.StockholmIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature-module.html">SeqFeature</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.System-class.html#species">species()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.System-class.html">System</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO-module.html">Bio.SeqIO.StockholmIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.SeqFeature-class.html">SeqFeature</a><br />
<span class="index-where">(in <a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.speclist-module.html">speclist</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot-module.html">Bio.expressions.swissprot</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#stoichiometric_block">stoichiometric_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO-module.html">SeqIO</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#split">split()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#stoichiometric_line">stoichiometric_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#seqline">seqline</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#split">split()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#stoichiometric_tag">stoichiometric_tag</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#seqline_nonewline">seqline_nonewline</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop.Record-class.html#split_in_loci">split_in_loci()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#stoichiometric_tag">stoichiometric_tag()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.SeqMap-class.html">SeqMap</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf-module.html">Bio.SCOP.Raf</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop.Record-class.html#split_in_pops">split_in_pops()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.CodonTable-class.html#stop_codons">stop_codons</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable.CodonTable-class.html">CodonTable</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.SeqMapIndex-class.html">SeqMapIndex</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf-module.html">Bio.SCOP.Raf</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.stringfns-module.html#splitany">splitany()</a><br />
<span class="index-where">(in <a href="Bio.stringfns-module.html">Bio.stringfns</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html#stopping_criteria">stopping_criteria()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html">ValidationIncreaseStop</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.Async.SplitFDist-class.html">SplitFDist</a><br />
<span class="index-where">(in <a href="Bio.PopGen.FDist.Async-module.html">Bio.PopGen.FDist.Async</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.StopTraining-module.html">StopTraining</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork-module.html">Bio.NeuralNetwork</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqRecord-module.html">SeqRecord</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt-module.html">SProt</a><br />
<span class="index-where">(in <a href="Bio.SwissProt-module.html">Bio.SwissProt</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support.Storage-class.html">Storage</a><br />
<span class="index-where">(in <a href="Martel.test.support-module.html">Martel.test.support</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqRecord.SeqRecord-class.html">SeqRecord</a><br />
<span class="index-where">(in <a href="Bio.SeqRecord-module.html">Bio.SeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html">sprot38</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot-module.html">Bio.expressions.swissprot</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Iterator.StoreEvents-class.html">StoreEvents</a><br />
<span class="index-where">(in <a href="Martel.Iterator-module.html">Martel.Iterator</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord-module.html">SeqRecord</a><br />
<span class="index-where">(in <a href="Bio.builders-module.html">Bio.builders</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.swissprot-module.html#sprot38">sprot38</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.swissprot-module.html">Bio.formatdefs.swissprot</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.Str-class.html">Str</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.writers.SeqRecord-module.html">SeqRecord</a><br />
<span class="index-where">(in <a href="Bio.writers-module.html">Bio.writers</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot40-module.html">sprot40</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot-module.html">Bio.expressions.swissprot</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Str">Str()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.swissprot-module.html#sprot40">sprot40</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.swissprot-module.html">Bio.formatdefs.swissprot</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Str1">Str1()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.builders.SeqRecord.sequence-module.html">sequence</a><br />
<span class="index-where">(in <a href="Bio.builders.SeqRecord-module.html">Bio.builders.SeqRecord</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#sprot_search_de">sprot_search_de()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#strand">strand</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.fasta-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Bio.expressions.fasta-module.html">Bio.expressions.fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#sprot_search_de">sprot_search_de()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html#strand">strand()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._HSPConsumer-class.html" onclick="show_private();">_HSPConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ExPASy-module.html#sprot_search_ful">sprot_search_ful()</a><br />
<span class="index-where">(in <a href="Bio.ExPASy-module.html">Bio.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Decode.String-class.html">String</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.ExPASy-module.html#sprot_search_ful">sprot_search_ful()</a><br />
<span class="index-where">(in <a href="Bio.WWW.ExPASy-module.html">Bio.WWW.ExPASy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Entrez.Parser.StringElement-class.html">StringElement</a><br />
<span class="index-where">(in <a href="Bio.Entrez.Parser-module.html">Bio.Entrez.Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.sequence-module.html">sequence</a><br />
<span class="index-where">(in <a href="Bio.formatdefs-module.html">Bio.formatdefs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#SQ">SQ</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.stringfns-module.html">stringfns</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.formatdefs.sequence-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.sequence-module.html">Bio.formatdefs.sequence</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#SQ">SQ</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Entrez.SerialSet-module.html#strings">strings</a><br />
<span class="index-where">(in <a href="Bio.Entrez.SerialSet-module.html">Bio.Entrez.SerialSet</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#SQ">SQ</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.AlignAceStandalone-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.AlignAceStandalone-module.html">Bio.AlignAce.AlignAceStandalone</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#sequence">sequence</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#SQ_block">SQ_block</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser-module.html">Bio.AlignAce.Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#SQ_data">SQ_data</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPAlignDict-class.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.FSSP.FSSPAlignDict-class.html">FSSPAlignDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#SQ_data">SQ_data</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIWWW-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIWWW-module.html">Bio.Blast.NCBIWWW</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_swissprot38-module.html#SQ_data">SQ_data</a><br />
<span class="index-where">(in <a href="Martel.test.test_swissprot38-module.html">Martel.test.test_swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Compass-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Compass-module.html">Bio.Compass</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html#SQ_data">SQ_data</a><br />
<span class="index-where">(in <a href="Martel.test.testformats.swissprot38-module.html">Martel.test.testformats.swissprot38</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Enzyme-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Enzyme-module.html">Bio.Enzyme</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics._RecordConsumer-class.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot40-module.html#SQ_exp">SQ_exp</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot40-module.html">Bio.expressions.swissprot.sprot40</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser-module.html">Bio.MEME.Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#SQ_line">SQ_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Medline-module.html">Bio.Medline</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#sequence">sequence()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace-module.html">Bio.Sequencing.Ace</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#SEQUENCE">SEQUENCE()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd-module.html">Bio.Sequencing.Phd</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#sequence_block">sequence_block</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.UniGene-module.html#StringTypes">StringTypes</a><br />
<span class="index-where">(in <a href="Bio.UniGene-module.html">Bio.UniGene</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#sequence_block">sequence_block</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.strip-class.html">strip</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Std-module.html#sequence_block">sequence_block()</a><br />
<span class="index-where">(in <a href="Bio.Std-module.html">Bio.Std</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.File.SGMLStripper-class.html#strip">strip()</a><br />
<span class="index-where">(in <a href="Bio.File.SGMLStripper-class.html">SGMLStripper</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#sequence_contents_line">sequence_contents_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.ResidueDepth%27-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.PDB.ResidueDepth%27-module.html">Bio.PDB.ResidueDepth'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SGMLExtractor.SGMLExtractor-class.html#strip">strip()</a><br />
<span class="index-where">(in <a href="Bio.SGMLExtractor.SGMLExtractor-class.html">SGMLExtractor</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#sequence_contents_multiline">sequence_contents_multiline</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KEGG.Compound-module.html#struct_wrap">struct_wrap()</a><br />
<span class="index-where">(in <a href="Bio.KEGG.Compound-module.html">Bio.KEGG.Compound</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#sequence_data">sequence_data()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27-module.html">Bio.SVDSuperimposer.SVDSuperimposer'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.KEGG.Enzyme-module.html#struct_wrap">struct_wrap()</a><br />
<span class="index-where">(in <a href="Bio.KEGG.Enzyme-module.html">Bio.KEGG.Enzyme</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._SequenceConsumer-class.html#sequence_data">sequence_data()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._SequenceConsumer-class.html" onclick="show_private();">_SequenceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer-module.html">Bio.SVDSuperimposer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Structure-module.html">Structure</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#sequence_descr">sequence_descr</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Structure.Structure-class.html">Structure</a><br />
<span class="index-where">(in <a href="Bio.PDB.Structure-module.html">Bio.PDB.Structure</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#sequence_entry">sequence_entry</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#structure">structure</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#sequence_final_line">sequence_final_line</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#sqrt">sqrt</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureAlignment%27.StructureAlignment-class.html">StructureAlignment</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureAlignment%27-module.html">Bio.PDB.StructureAlignment'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF._RecordConsumer-class.html#sequence_final_text">sequence_final_text()</a><br />
<span class="index-where">(in <a href="Bio.NBRF._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_DEBUG">SRE_FLAG_DEBUG</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureAlignment%27-module.html">StructureAlignment'</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Record.Record-class.html#SEQUENCE_FORMAT">SEQUENCE_FORMAT</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Record.Record-class.html">Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_DEBUG">SRE_FLAG_DEBUG</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder-module.html">StructureBuilder</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#sequence_header">sequence_header()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_DOTALL">SRE_FLAG_DOTALL</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder-module.html">Bio.PDB.StructureBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.EmblScanner-class.html#SEQUENCE_HEADERS">SEQUENCE_HEADERS</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.EmblScanner-class.html">EmblScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_DOTALL">SRE_FLAG_DOTALL</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Entrez.Parser.StructureElement-class.html">StructureElement</a><br />
<span class="index-where">(in <a href="Bio.Entrez.Parser-module.html">Bio.Entrez.Parser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.GenBankScanner-class.html#SEQUENCE_HEADERS">SEQUENCE_HEADERS</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.GenBankScanner-class.html">GenBankScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_IGNORECASE">SRE_FLAG_IGNORECASE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Entrez.SerialSet-module.html#structures">structures</a><br />
<span class="index-where">(in <a href="Bio.Entrez.SerialSet-module.html">Bio.Entrez.SerialSet</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#SEQUENCE_HEADERS">SEQUENCE_HEADERS</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_IGNORECASE">SRE_FLAG_IGNORECASE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#STS">STS()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#sequence_id">sequence_id</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_LOCALE">SRE_FLAG_LOCALE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.biblio.BiblioCollection-class.html#subcollection">subcollection()</a><br />
<span class="index-where">(in <a href="Bio.biblio.BiblioCollection-class.html">BiblioCollection</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#sequence_info">sequence_info</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_LOCALE">SRE_FLAG_LOCALE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Graphics.BasicChromosome.Chromosome-class.html#subcomponent_size">subcomponent_size()</a><br />
<span class="index-where">(in <a href="Bio.Graphics.BasicChromosome.Chromosome-class.html">Chromosome</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#sequence_info">sequence_info</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_MULTILINE">SRE_FLAG_MULTILINE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#subheadings">subheadings()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#sequence_key_line">sequence_key_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_MULTILINE">SRE_FLAG_MULTILINE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.ncbiblast-module.html#subject_line">subject_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.ncbiblast-module.html">Bio.expressions.blast.ncbiblast</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#sequence_line">sequence_line</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_TEMPLATE">SRE_FLAG_TEMPLATE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.SubjectType-class.html">SubjectType</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#sequence_line">sequence_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_TEMPLATE">SRE_FLAG_TEMPLATE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.SubjectType-class.html">SubjectType</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#SEQUENCE_LINE">SEQUENCE_LINE</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_UNICODE">SRE_FLAG_UNICODE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#sublocation">sublocation()</a><br />
<span class="index-where">(in <a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF._RecordConsumer-class.html#sequence_line">sequence_line()</a><br />
<span class="index-where">(in <a href="Bio.NBRF._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_UNICODE">SRE_FLAG_UNICODE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.SubObjectSelector-class.html">SubObjectSelector</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF._RecordConsumer-class.html#sequence_name">sequence_name()</a><br />
<span class="index-where">(in <a href="Bio.NBRF._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_FLAG_VERBOSE">SRE_FLAG_VERBOSE</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SUBPATTERN">SUBPATTERN</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#sequence_plus_spaces">sequence_plus_spaces</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_FLAG_VERBOSE">SRE_FLAG_VERBOSE</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SUBPATTERN">SUBPATTERN</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#sequence_tag">sequence_tag</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_INFO_CHARSET">SRE_INFO_CHARSET</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.SubPattern-class.html">SubPattern</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#sequence_text">sequence_text</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_INFO_CHARSET">SRE_INFO_CHARSET</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.SubProvider-class.html">SubProvider</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Config-module.html#SEQUENCE_TYPE">SEQUENCE_TYPE</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Config-module.html">Bio.EUtils.Config</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_INFO_LITERAL">SRE_INFO_LITERAL</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.subs-class.html">subs</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#sequence_type">sequence_type</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_INFO_LITERAL">SRE_INFO_LITERAL</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html#SUBS">SUBS</a><br />
<span class="index-where">(in <a href="Bio.SubsMat-module.html">Bio.SubsMat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF._RecordConsumer-class.html#sequence_type">sequence_type()</a><br />
<span class="index-where">(in <a href="Bio.NBRF._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SRE_INFO_PREFIX">SRE_INFO_PREFIX</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#subsets_block">subsets_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.nbrf_format-module.html#sequence_types">sequence_types</a><br />
<span class="index-where">(in <a href="Bio.NBRF.nbrf_format-module.html">Bio.NBRF.nbrf_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SRE_INFO_PREFIX">SRE_INFO_PREFIX</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#subsets_line">subsets_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.SequenceDBIdsFetchMixin-class.html">SequenceDBIdsFetchMixin</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#SS">SS()</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#subsets_tag">subsets_tag</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.SequenceDBIdsRecord-class.html">SequenceDBIdsRecord</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#ss1">ss1</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#subsets_tag">subsets_tag()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.SequenceDBIdsRecordSet-class.html">SequenceDBIdsRecordSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.DSSP%27-module.html#ss_to_index">ss_to_index()</a><br />
<span class="index-where">(in <a href="Bio.PDB.DSSP%27-module.html">Bio.PDB.DSSP'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat-module.html">SubsMat</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.Mixins.SequenceFetchMixin-class.html">SequenceFetchMixin</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Mixins-module.html">Bio.EUtils.Mixins</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Repair.Stabilizing-module.html">Stabilizing</a><br />
<span class="index-where">(in <a href="Bio.GA.Repair-module.html">Bio.GA.Repair</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#substance_block">substance_block</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.SequenceHistoryFetchMixin-class.html">SequenceHistoryFetchMixin</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.DSSP%27-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.DSSP%27-module.html">Bio.PDB.DSSP'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#substance_line">substance_line</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.SequenceHistoryRecord-class.html">SequenceHistoryRecord</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.FragmentMapper%27-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.FragmentMapper%27-module.html">Bio.PDB.FragmentMapper'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#substance_multiline">substance_multiline</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.SequenceHistoryRecordSet-class.html">SequenceHistoryRecordSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.HSExposure-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.HSExposure-module.html">Bio.PDB.HSExposure</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell._RecordConsumer-class.html#substance_multiline">substance_multiline()</a><br />
<span class="index-where">(in <a href="Bio.ECell._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequenceIterator-class.html">SequenceIterator</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces-module.html">Bio.SeqIO.Interfaces</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.PSEA-module.html">Bio.PDB.PSEA</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#substance_name">substance_name()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Fasta.SequenceParser-class.html">SequenceParser</a><br />
<span class="index-where">(in <a href="Bio.Fasta-module.html">Bio.Fasta</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#substance_tag">substance_tag</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.SequenceParser-class.html">SequenceParser</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt-module.html">Bio.SwissProt.SProt</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.ResidueDepth%27-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.ResidueDepth%27-module.html">Bio.PDB.ResidueDepth'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Gobase.SequenceRecord-class.html">SequenceRecord</a><br />
<span class="index-where">(in <a href="Bio.Gobase-module.html">Bio.Gobase</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureAlignment%27-module.html#standard_aa_names">standard_aa_names</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureAlignment%27-module.html">Bio.PDB.StructureAlignment'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequences">sequences()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#standard_dna_table">standard_dna_table</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#SEQUENCES_LENGTH_LINE">SEQUENCES_LENGTH_LINE</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable-module.html#standard_rna_table">standard_rna_table</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable-module.html">Bio.Data.CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequenceWriter-class.html">SequenceWriter</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces-module.html">Bio.SeqIO.Interfaces</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF-module.html#standard_translator">standard_translator</a><br />
<span class="index-where">(in <a href="Bio.GFF-module.html">Bio.GFF</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing-module.html">Sequencing</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config._stanzaformat.Stanza-class.html">Stanza</a><br />
<span class="index-where">(in <a href="Bio.config._stanzaformat-module.html">Bio.config._stanzaformat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html">SequentialAlignmentWriter</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.Interfaces-module.html">Bio.AlignIO.Interfaces</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.config._stanzaformat.StanzaFormat-class.html">StanzaFormat</a><br />
<span class="index-where">(in <a href="Bio.config._stanzaformat-module.html">Bio.config._stanzaformat</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html">SequentialSequenceWriter</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.Interfaces-module.html">Bio.SeqIO.Interfaces</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#start">start</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#subtract">subtract</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html">SeqUtils</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.easy.Location-class.html#start">start()</a><br />
<span class="index-where">(in <a href="Bio.GFF.easy.Location-class.html">Location</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_constants-module.html#SUCCESS">SUCCESS</a><br />
<span class="index-where">(in <a href="Martel.msre_constants-module.html">Martel.msre_constants</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Entrez.SerialSet-module.html">SerialSet</a><br />
<span class="index-where">(in <a href="Bio.Entrez-module.html">Bio.Entrez</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html#start">start()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#SUCCESS">SUCCESS</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#set">set()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.LAX.LAX-class.html#start">start()</a><br />
<span class="index-where">(in <a href="Martel.LAX.LAX-class.html">LAX</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Query-class.html#suffix">suffix</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Query-class.html">Query</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html#set">set()</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html">SVDSuperimposer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_">start_()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.StepMatrix-class.html#sum">sum()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.StepMatrix-class.html">StepMatrix</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.config.DBRegistry.DBObject-class.html#set">set()</a><br />
<span class="index-where">(in <a href="Bio.config.DBRegistry.DBObject-class.html">DBObject</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_info-class.html#start_">start_()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_info-class.html">Handle_search_info</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#sum">sum()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_altloc">set_altloc()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_sequence-class.html#start_">start_()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_sequence-class.html">Handle_sequence</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#sum_2ple">sum_2ple()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_anisou">set_anisou()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.builders.Search.search.BuildSearch-class.html#start_">start_()</a><br />
<span class="index-where">(in <a href="Bio.builders.Search.search.BuildSearch-class.html">BuildSearch</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#sum_branchlength">sum_branchlength()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_anisou">set_anisou()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_a">start_a()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#sum_is_constant_block">sum_is_constant_block</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Superimposer%27.Superimposer-class.html#set_atoms">set_atoms()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Superimposer%27.Superimposer-class.html">Superimposer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_a">start_a()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.metatool_format-module.html#sum_is_constant_line">sum_is_constant_line</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.metatool_format-module.html">Bio.MetaTool.metatool_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#set_attribute">set_attribute()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NetCatch.ExtractUrls-class.html#start_a">start_a()</a><br />
<span class="index-where">(in <a href="Bio.NetCatch.ExtractUrls-class.html">ExtractUrls</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool._RecordConsumer-class.html#sum_is_constant_line">sum_is_constant_line()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_bfactor">set_bfactor()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#start_aa_list">start_aa_list</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Summary-class.html">Summary</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#set_cai_index">set_cai_index()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html">CodonAdaptationIndex</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#start_accnum_block">start_accnum_block()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.DBIdsLookup-class.html#summary">summary()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient.DBIdsLookup-class.html">DBIdsLookup</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_coord">set_coord()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_aligned_contents_multiline">start_aligned_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.DBIdsRecord-class.html#summary">summary()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient.DBIdsRecord-class.html">DBIdsRecord</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KDTree.KDTree.KDTree-class.html#set_coords">set_coords()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.KDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_aligned_tag">start_aligned_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.HistoryLookup-class.html#summary">summary()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient.HistoryLookup-class.html">HistoryLookup</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KDTree.CKDTree.KDTree-class.html#set_data">set_data()</a><br />
<span class="index-where">(in <a href="Bio.KDTree.CKDTree.KDTree-class.html">KDTree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#start_alignment">start_alignment()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html" onclick="show_private();">_AlignmentConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.HistoryRecord-class.html#summary">summary()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient.HistoryRecord-class.html">HistoryRecord</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#set_data">set_data()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_sequence-class.html#start_alphabet">start_alphabet()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_sequence-class.html">Handle_sequence</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#summary_line">summary_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#set_defaults">set_defaults()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_application_name">start_application_name()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP-module.html#summary_rec">summary_rec</a><br />
<span class="index-where">(in <a href="Bio.FSSP-module.html">Bio.FSSP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#set_dirty">set_dirty()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_application_version">start_application_version()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP-module.html#summary_title">summary_title</a><br />
<span class="index-where">(in <a href="Bio.FSSP-module.html">Bio.FSSP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#set_dna_matrix">set_dna_matrix()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#start_b">start_b()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#summary_type_parser_table">summary_type_parser_table</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_emission_pseudocount">set_emission_pseudocount()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Saf._RecordConsumer-class.html#start_candidate_line">start_candidate_line()</a><br />
<span class="index-where">(in <a href="Bio.Saf._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo.SummaryInfo-class.html">SummaryInfo</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo-module.html">Bio.Align.AlignInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_emission_score">set_emission_score()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_cd_contents_multiline">start_cd_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Dispatch-module.html#superdir">superdir()</a><br />
<span class="index-where">(in <a href="Martel.Dispatch-module.html">Martel.Dispatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_equal_probabilities">set_equal_probabilities()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_cd_tag">start_cd_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Superimposer%27.Superimposer-class.html">Superimposer</a><br />
<span class="index-where">(in <a href="Bio.PDB.Superimposer%27-module.html">Bio.PDB.Superimposer'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#set_guide_tree">set_guide_tree()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.CodonTable-class.html#start_codons">start_codons</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable.CodonTable-class.html">CodonTable</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Superimposer%27-module.html">Superimposer'</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#set_handle">set_handle()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_database_name">start_database_name()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.RestrictionBatch-class.html#suppl_codes">suppl_codes()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.RestrictionBatch-class.html">RestrictionBatch</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_header">set_header()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_database_num_letters">start_database_num_letters()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Commercially_available-class.html#supplier_list">supplier_list()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Commercially_available-class.html">Commercially_available</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#set_id">set_id()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_search_header-class.html#start_database_num_sequences">start_database_num_sequences()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_search_header-class.html">Handle_search_header</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Not_available-class.html#supplier_list">supplier_list()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Not_available-class.html">Not_available</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#set_indented">set_indented()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#start_database_report">start_database_report()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html" onclick="show_private();">_DatabaseReportConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction_Dictionary-module.html#suppliers">suppliers</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction_Dictionary-module.html">Bio.Restriction.Restriction_Dictionary</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#set_inline">set_inline()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_date_contents_multiline">start_date_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Commercially_available-class.html#suppliers">suppliers()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Commercially_available-class.html">Commercially_available</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#set_interest_tags">set_interest_tags()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_date_tag">start_date_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Not_available-class.html#suppliers">suppliers()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Not_available-class.html">Not_available</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#set_interest_tags">set_interest_tags()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#start_db_block">start_db_block()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler-module.html#suppliersdict">suppliersdict</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler-module.html">Bio.Restriction._Update.RestrictionCompiler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf._RecordConsumer-class.html#set_interest_tags">set_interest_tags()</a><br />
<span class="index-where">(in <a href="Bio.Saf._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_dbid-class.html#start_dbid">start_dbid()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_dbid-class.html">Handle_dbid</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.support-module.html">support</a><br />
<span class="index-where">(in <a href="Martel.test-module.html">Martel.test</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#set_level">set_level()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_dbxref-class.html#start_dbxref">start_dbxref()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_dbxref-class.html">Handle_dbxref</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Generate-module.html#supports_lookahead">supports_lookahead</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IndentedText-class.html#set_level">set_level()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.IndentedText-class.html">IndentedText</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_dbxref-class.html#start_dbxref_dbid">start_dbxref_dbid()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_dbxref-class.html">Handle_dbxref</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.test_Generate-module.html#supports_lookahead">supports_lookahead</a><br />
<span class="index-where">(in <a href="Martel.test.test_Generate-module.html">Martel.test.test_Generate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_line_counter">set_line_counter()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_dbxref-class.html#start_dbxref_dbname">start_dbxref_dbname()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_dbxref-class.html">Handle_dbxref</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.Surrogate-class.html">Surrogate</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#set_mask">set_mask()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_dbxref-class.html#start_dbxref_negate">start_dbxref_negate()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_dbxref-class.html">Handle_dbxref</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GFF.GenericTools.SurrogateNotInitedError-class.html">SurrogateNotInitedError</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#set_namespace">set_namespace()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_description-class.html#start_description">start_description()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_description-class.html">Handle_description</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.embl.embl65-module.html#SV_line">SV_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.embl.embl65-module.html">Bio.expressions.embl.embl65</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#set_new_guide_tree">set_new_guide_tree()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_description-class.html#start_description_block">start_description_block()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_description-class.html">Handle_description</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer-module.html">SVDSuperimposer</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_occupancy">set_occupancy()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_description_contents_multiline">start_description_contents_multiline()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27.SVDSuperimposer-class.html">SVDSuperimposer</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer.SVDSuperimposer%27-module.html">Bio.SVDSuperimposer.SVDSuperimposer'</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.Nexus-class.html#set_original_taxon_order">set_original_taxon_order()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.Nexus-class.html">Nexus</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD._RecordConsumer-class.html#start_description_tag">start_description_tag()</a><br />
<span class="index-where">(in <a href="Bio.CDD._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SVDSuperimposer.SVDSuperimposer%27-module.html">SVDSuperimposer'</a><br />
<span class="index-where">(in <a href="Bio.SVDSuperimposer-module.html">Bio.SVDSuperimposer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#set_output">set_output()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#start_descriptions">start_descriptions()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html" onclick="show_private();">_DescriptionConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SwissIO-module.html">SwissIO</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Application.AbstractCommandline-class.html#set_parameter">set_parameter()</a><br />
<span class="index-where">(in <a href="Bio.Application.AbstractCommandline-class.html">AbstractCommandline</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#start_descriptions">start_descriptions()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html" onclick="show_private();">_PSIBlastConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.SwissIO-module.html#SwissIterator">SwissIterator()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.SwissIO-module.html">Bio.SeqIO.SwissIO</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_parent">set_parent()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_dbxref-class.html#start_fast_dbxref">start_fast_dbxref()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_dbxref-class.html">Handle_dbxref</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt-module.html">SwissProt</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.DisorderedEntityWrapper-class.html#set_parent">set_parent()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.DisorderedEntityWrapper-class.html">DisorderedEntityWrapper</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_location-class.html#start_feature">start_feature()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_location-class.html">Handle_feature_location</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.swissprot-module.html">swissprot</a><br />
<span class="index-where">(in <a href="Bio.dbdefs-module.html">Bio.dbdefs</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Entity.Entity-class.html#set_parent">set_parent()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Entity.Entity-class.html">Entity</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_features-class.html#start_feature">start_feature()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_features-class.html">Handle_features</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.swissprot-module.html#swissprot">swissprot</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.swissprot-module.html">Bio.dbdefs.swissprot</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#set_prev">set_prev()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_features-class.html#start_feature_block">start_feature_block()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_features-class.html">Handle_features</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot-module.html">swissprot</a><br />
<span class="index-where">(in <a href="Bio.expressions-module.html">Bio.expressions</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Encodings.IUPACEncoding-module.html#set_prop">set_prop</a><br />
<span class="index-where">(in <a href="Bio.Encodings.IUPACEncoding-module.html">Bio.Encodings.IUPACEncoding</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_features-class.html#start_feature_description">start_feature_description()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_features-class.html">Handle_features</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.swissprot-module.html">swissprot</a><br />
<span class="index-where">(in <a href="Bio.formatdefs-module.html">Bio.formatdefs</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#set_protein_matrix">set_protein_matrix()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_location-class.html#start_feature_location">start_feature_location()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_location-class.html">Handle_feature_location</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.formatdefs.swissprot-module.html#swissprot">swissprot</a><br />
<span class="index-where">(in <a href="Bio.formatdefs.swissprot-module.html">Bio.formatdefs.swissprot</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_random_probabilities">set_random_probabilities()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_location-class.html#start_feature_location_end">start_feature_location_end()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_location-class.html">Handle_feature_location</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.test.testformats.swissprot38-module.html">swissprot38</a><br />
<span class="index-where">(in <a href="Martel.test.testformats-module.html">Martel.test.testformats</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#set_scale">set_scale()</a><br />
<span class="index-where">(in <a href="Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html">ChromosomeCounts</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_location-class.html#start_feature_location_start">start_feature_location_start()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_location-class.html">Handle_feature_location</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.swissprot-module.html#swissprot_expasy_cgi">swissprot_expasy_cgi</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.swissprot-module.html">Bio.dbdefs.swissprot</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_serial_number">set_serial_number()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_features-class.html#start_feature_name">start_feature_name()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_features-class.html">Handle_features</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.swissprot-module.html#swissprot_usmirror_cgi">swissprot_usmirror_cgi</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.swissprot-module.html">Bio.dbdefs.swissprot</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_sigatm">set_sigatm()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_qualifier-class.html#start_feature_qualifier">start_feature_qualifier()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_qualifier-class.html">Handle_feature_qualifier</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.Symbol-class.html">Symbol</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_sigatm">set_sigatm()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_qualifier-class.html#start_feature_qualifier_description">start_feature_qualifier_description()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_qualifier-class.html">Handle_feature_qualifier</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#symbol_forward">symbol_forward</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.Atom.Atom-class.html#set_siguij">set_siguij()</a><br />
<span class="index-where">(in <a href="Bio.PDB.Atom.Atom-class.html">Atom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.StdHandler.Handle_feature_qualifier-class.html#start_feature_qualifier_name">start_feature_qualifier_name()</a><br />
<span class="index-where">(in <a href="Bio.StdHandler.Handle_feature_qualifier-class.html">Handle_feature_qualifier</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#symbol_reverse">symbol_reverse</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_siguij">set_siguij()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#start_feature_table">start_feature_table()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage-module.html#SynonymousCodons">SynonymousCodons</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage-module.html">Bio.SeqUtils.CodonUsage</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.PDBIO-class.html#set_structure">set_structure()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBIO%27.PDBIO-class.html">PDBIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#start_feature_table">start_feature_table()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway.System-class.html">System</a><br />
<span class="index-where">(in <a href="Bio.Pathway-module.html">Bio.Pathway</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#set_subtree">set_subtree()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#start_h1">start_h1()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#system_block">system_block</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nodes.Node-class.html#set_succ">set_succ()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nodes.Node-class.html">Node</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#start_h2">start_h2()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#system_line">system_line</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_symmetry">set_symmetry()</a><br />
<span class="index-where">(in <a href="Bio.PDB.StructureBuilder.StructureBuilder-class.html">StructureBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#start_h2">start_h2()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell._RecordConsumer-class.html#system_line">system_line()</a><br />
<span class="index-where">(in <a href="Bio.ECell._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.Comment-class.html#set_text">set_text()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.Comment-class.html">Comment</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._BlastConsumer-class.html#start_header">start_header()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._BlastConsumer-class.html" onclick="show_private();">_BlastConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ECell.ecell_format-module.html#system_tag">system_tag</a><br />
<span class="index-where">(in <a href="Bio.ECell.ecell_format-module.html">Bio.ECell.ecell_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.IndentedText-class.html#set_text">set_text()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.IndentedText-class.html">IndentedText</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#start_header">start_header()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._HeaderConsumer-class.html" onclick="show_private();">_HeaderConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.Input-module.html#system_to_metatool">system_to_metatool()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.Input-module.html">Bio.MetaTool.Input</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_transition_pseudocount">set_transition_pseudocount()</a><br />
<span class="index-where">(in <a href="Bio.HMM.MarkovModel.MarkovModelBuilder-class.html">MarkovModelBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#start_header">start_header()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html" onclick="show_private();">_PSIBlastConsumer</a>)</span></td>
<td width="33%" class="link-index"> </td>
</tr>
</table>
</td></tr>
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