<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Identifier Index</title>
<link rel="stylesheet" href="epydoc.css" type="text/css" />
<script type="text/javascript" src="epydoc.js"></script>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%"> </td>
<td>
<table cellpadding="0" cellspacing="0">
<!-- hide/show private -->
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
onclick="toggle_private();">hide private</a>]</span></td></tr>
<tr><td align="right"><span class="options"
>[<a href="frames.html" target="_top">frames</a
>] | <a href="identifier-index-P.html"
target="_top">no frames</a>]</span></td></tr>
</table>
</td>
</tr>
</table>
<table border="0" width="100%">
<tr valign="bottom"><td>
<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
<a href="identifier-index-A.html">A</a>
<a href="identifier-index-B.html">B</a>
<a href="identifier-index-C.html">C</a>
<a href="identifier-index-D.html">D</a>
<a href="identifier-index-E.html">E</a>
<a href="identifier-index-F.html">F</a>
<a href="identifier-index-G.html">G</a>
<a href="identifier-index-H.html">H</a>
<a href="identifier-index-I.html">I</a>
<a href="identifier-index-J.html">J</a>
<a href="identifier-index-K.html">K</a>
<a href="identifier-index-L.html">L</a>
<a href="identifier-index-M.html">M</a>
<a href="identifier-index-N.html">N</a>
<a href="identifier-index-O.html">O</a>
<a href="identifier-index-P.html">P</a>
<a href="identifier-index-Q.html">Q</a>
<a href="identifier-index-R.html">R</a>
<a href="identifier-index-S.html">S</a>
<a href="identifier-index-T.html">T</a>
<a href="identifier-index-U.html">U</a>
<a href="identifier-index-V.html">V</a>
<a href="identifier-index-W.html">W</a>
<a href="identifier-index-X.html">X</a>
<a href="identifier-index-Y.html">Y</a>
Z
<a href="identifier-index-_.html">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="P">P</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_absolute_location">p_absolute_location()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html#ParseAlignment">ParseAlignment()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.Query-class.html#prefix">prefix</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.Query-class.html">Query</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeParser-class.html#p_arg">p_arg()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeParser-class.html">DecodeParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.ParseBlastTable-module.html">ParseBlastTable</a><br />
<span class="index-where">(in <a href="Bio.Blast-module.html">Bio.Blast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#PrefWidth">PrefWidth</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeParser-class.html#p_args">p_args()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeParser-class.html">DecodeParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#parseFile">parseFile()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTTraversal-class.html#preorder">preorder()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTTraversal-class.html">GenericASTTraversal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_base_position">p_base_position()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.HeaderFooterParser-class.html#parseFile">parseFile()</a><br />
<span class="index-where">(in <a href="Martel.Parser.HeaderFooterParser-class.html">HeaderFooterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.ReseekFile-module.html#prepare_input_source">prepare_input_source()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.ReseekFile-module.html">Bio.EUtils.ReseekFile</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_base_range">p_base_range()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.Parser-class.html#parseFile">parseFile()</a><br />
<span class="index-where">(in <a href="Martel.Parser.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTBuilder-class.html#preprocess">preprocess()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTBuilder-class.html">GenericASTBuilder</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_between_position">p_between_position()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.RecordParser-class.html#parseFile">parseFile()</a><br />
<span class="index-where">(in <a href="Martel.Parser.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTMatcher-class.html#preprocess">preprocess()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTMatcher-class.html">GenericASTMatcher</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_database">p_database()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html#parseline">parseline()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.RestrictionCompiler.DictionaryBuilder-class.html">DictionaryBuilder</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#preprocess">preprocess()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeParser-class.html#p_expression">p_expression()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeParser-class.html">DecodeParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser-module.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.AlignAce-module.html">Bio.AlignAce</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.HMM.Utilities-module.html#pretty_print_prediction">pretty_print_prediction()</a><br />
<span class="index-where">(in <a href="Bio.HMM.Utilities-module.html">Bio.HMM.Utilities</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_feature_label">p_feature_label()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Entrez.Parser-module.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.Entrez-module.html">Bio.Entrez</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#primary">primary</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_feature_name">p_feature_name()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser-module.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.MEME-module.html">Bio.MEME</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#primary">primary()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_function">p_function()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Cla.Parser-class.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Cla-module.html">Bio.SCOP.Cla</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.swissprot.sprot38-module.html#primary_id">primary_id</a><br />
<span class="index-where">(in <a href="Bio.expressions.swissprot.sprot38-module.html">Bio.expressions.swissprot.sprot38</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_functional_operator">p_functional_operator()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Des.Parser-class.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Des-module.html">Bio.SCOP.Des</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html#primary_key_name">primary_key_name()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer-class.html">BaseSeqRecordIndexer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_high_base_bound">p_high_base_bound()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Dom.Parser-class.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Dom-module.html">Bio.SCOP.Dom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html#primary_key_name">primary_key_name()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.FunctionIndexer-class.html">FunctionIndexer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_local_location">p_local_location()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Hie.Parser-class.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Hie-module.html">Bio.SCOP.Hie</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html#primary_key_name">primary_key_name()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.SimpleSeqRecord.SimpleIndexer-class.html">SimpleIndexer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_location">p_location()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.Parser-class.html">Parser</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf-module.html">Bio.SCOP.Raf</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#primary_line">primary_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_location_list">p_location_list()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser-module.html">Parser</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#primary_ref_line">primary_ref_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_low_base_bound">p_low_base_bound()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.Parser-class.html">Parser</a><br />
<span class="index-where">(in <a href="Martel.Parser-module.html">Martel.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#primary_ref_line">primary_ref_line()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_path">p_path()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.ParseRecords-class.html">ParseRecords</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.BerkeleyDB.PrimaryNamespace-class.html">PrimaryNamespace</a><br />
<span class="index-where">(in <a href="Bio.Mindy.BerkeleyDB-module.html">Bio.Mindy.BerkeleyDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_primary_accession">p_primary_accession()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.ParserException-class.html">ParserException</a><br />
<span class="index-where">(in <a href="Martel.Parser-module.html">Martel.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.PrimaryNamespace-class.html">PrimaryNamespace</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode.DecodeParser-class.html#p_term">p_term()</a><br />
<span class="index-where">(in <a href="Bio.Decode.DecodeParser-class.html">DecodeParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.ParserFailureError-class.html">ParserFailureError</a></td>
<td width="33%" class="link-index"><a href="Bio.Mindy.FlatDB.PrimaryTable-class.html">PrimaryTable</a><br />
<span class="index-where">(in <a href="Bio.Mindy.FlatDB-module.html">Bio.Mindy.FlatDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_two_base_bound_1">p_two_base_bound_1()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.ParserIncompleteException-class.html">ParserIncompleteException</a><br />
<span class="index-where">(in <a href="Martel.Parser-module.html">Martel.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer-module.html">Primer</a><br />
<span class="index-where">(in <a href="Bio.Emboss-module.html">Bio.Emboss</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.LocationParser-class.html#p_two_base_bound_2">p_two_base_bound_2()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser.LocationParser-class.html">LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.ParserPositionException-class.html">ParserPositionException</a><br />
<span class="index-where">(in <a href="Martel.Parser-module.html">Martel.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html">primer3_format</a><br />
<span class="index-where">(in <a href="Bio.Emboss-module.html">Bio.Emboss</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.pad-class.html">pad</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.ParserRecordException-class.html">ParserRecordException</a><br />
<span class="index-where">(in <a href="Martel.Parser-module.html">Martel.Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications.Primer3Commandline-class.html">Primer3Commandline</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Applications-module.html">Bio.Emboss.Applications</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#pagination">pagination()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers-module.html">Parsers</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.Primer3Parser-class.html">Primer3Parser</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.InterPro-module.html#pairlist_to_dict">pairlist_to_dict()</a><br />
<span class="index-where">(in <a href="Bio.InterPro-module.html">Bio.InterPro</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.ParserSupport-module.html">ParserSupport</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.Primer3Primers-class.html">Primer3Primers</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.pairwise2-module.html">pairwise2</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.HeaderFooterParser-class.html#parseString">parseString()</a><br />
<span class="index-where">(in <a href="Martel.Parser.HeaderFooterParser-class.html">HeaderFooterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.Primer3Record-class.html">Primer3Record</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications.PalindromeCommandline-class.html">PalindromeCommandline</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Applications-module.html">Bio.Emboss.Applications</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.Parser-class.html#parseString">parseString()</a><br />
<span class="index-where">(in <a href="Martel.Parser.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#primer_name">primer_name</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Palindromic-class.html">Palindromic</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction-module.html">Bio.Restriction.Restriction</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Parser.RecordParser-class.html#parseString">parseString()</a><br />
<span class="index-where">(in <a href="Martel.Parser.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html#primer_name">primer_name()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer._PrimerSearchRecordConsumer-class.html" onclick="show_private();">_PrimerSearchRecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam120">pam120</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Expression.PassThrough-class.html">PassThrough</a><br />
<span class="index-where">(in <a href="Martel.Expression-module.html">Martel.Expression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html#primer_name_line">primer_name_line</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primersearch_format-module.html">Bio.Emboss.primersearch_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam180">pam180</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Time-module.html#pat">pat</a><br />
<span class="index-where">(in <a href="Martel.Time-module.html">Martel.Time</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#primer_space">primer_space</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam250">pam250</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser.Path-class.html">Path</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#primer_start_line">primer_start_line</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam30">pam30</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#pathname">pathname()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primersearch_format-module.html">primersearch_format</a><br />
<span class="index-where">(in <a href="Bio.Emboss-module.html">Bio.Emboss</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam300">pam300</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Pathway-module.html">Pathway</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.PrimerSearchAmplifier-class.html">PrimerSearchAmplifier</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam60">pam60</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MetaTool.Record.PathwayTransform-class.html">PathwayTransform</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.Record-module.html">Bio.MetaTool.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Applications.PrimerSearchCommandline-class.html">PrimerSearchCommandline</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Applications-module.html">Bio.Emboss.Applications</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SubsMat.MatrixInfo-module.html#pam90">pam90</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.MatrixInfo-module.html">Bio.SubsMat.MatrixInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern-module.html">Pattern</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene-module.html">Bio.NeuralNetwork.Gene</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.PrimerSearchInputRecord-class.html">PrimerSearchInputRecord</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#parameter">parameter()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html">Pattern</a><br />
<span class="index-where">(in <a href="Bio.Prosite-module.html">Bio.Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.PrimerSearchOutputRecord-class.html">PrimerSearchOutputRecord</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.Record.Parameters-class.html">Parameters</a><br />
<span class="index-where">(in <a href="Bio.Blast.Record-module.html">Bio.Blast.Record</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.msre_parse.Pattern-class.html">Pattern</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.PrimerSearchParser-class.html">PrimerSearchParser</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer-module.html">Bio.Emboss.Primer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.expressions.blast.wublast-module.html#parameters">parameters</a><br />
<span class="index-where">(in <a href="Bio.expressions.blast.wublast-module.html">Bio.expressions.blast.wublast</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#pattern">pattern()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#print_as">print_as()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html#parameters">parameters()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceConsumer-class.html">AlignAceConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#pattern_mapping">pattern_mapping()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Generate.print_debug-class.html">print_debug</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html#parent_edges">parent_edges()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.PatternHit-class.html">PatternHit</a><br />
<span class="index-where">(in <a href="Bio.Prosite-module.html">Bio.Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html#print_full_mat">print_full_mat()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#parent_edges">parent_edges()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html">PatternIO</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern-module.html">Bio.NeuralNetwork.Gene.Pattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#print_index">print_index()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html">CodonAdaptationIndex</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.Graph.Graph-class.html#parents">parents()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.Graph.Graph-class.html">Graph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html">PatternRepository</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.Gene.Pattern-module.html">Bio.NeuralNetwork.Gene.Pattern</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel.Generate.print_info-class.html">print_info</a><br />
<span class="index-where">(in <a href="Martel.Generate-module.html">Martel.Generate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#parents">parents()</a><br />
<span class="index-where">(in <a href="Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html">MultiGraph</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced.PC5-class.html">PC5</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo-module.html#print_info_content">print_info_content()</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo-module.html">Bio.Align.AlignInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html">parse</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.Reduced-module.html#pc_5_table">pc_5_table</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.Reduced-module.html">Bio.Alphabet.Reduced</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.Record-class.html#print_item">print_item()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.Record-class.html">Record</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile.CelParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile.CelParser-class.html">CelParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.HSExposure.HSExposureCA-class.html#pcb_vectors_pymol">pcb_vectors_pymol()</a><br />
<span class="index-where">(in <a href="Bio.PDB.HSExposure.HSExposureCA-class.html">HSExposureCA</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.Record-class.html#print_item">print_item()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.Record-class.html">Record</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.AlignAceParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.AlignAceParser-class.html">AlignAceParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB-module.html">PDB</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SubsMat.SeqMat-class.html#print_mat">print_mat()</a><br />
<span class="index-where">(in <a href="Bio.SubsMat.SeqMat-class.html">SeqMat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Parser.CompareAceParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Parser.CompareAceParser-class.html">CompareAceParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.pdb-module.html">pdb</a><br />
<span class="index-where">(in <a href="Bio.dbdefs-module.html">Bio.dbdefs</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.pairwise2-module.html#print_matrix">print_matrix()</a><br />
<span class="index-where">(in <a href="Bio.pairwise2-module.html">Bio.pairwise2</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.AlignIO-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.AlignIO-module.html">Bio.AlignIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.pdb-module.html#pdb">pdb</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.pdb-module.html">Bio.dbdefs.pdb</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#print_params">print_params()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone.BlastErrorParser-class.html">BlastErrorParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPAlignDict-class.html#pdb">pdb()</a><br />
<span class="index-where">(in <a href="Bio.FSSP.FSSPAlignDict-class.html">FSSPAlignDict</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#print_stack">print_stack()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.BlastParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone.BlastParser-class.html">BlastParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.pdb-module.html#pdb_ebi_cgi">pdb_ebi_cgi</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.pdb-module.html">Bio.dbdefs.pdb</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html#print_that">print_that()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.PSIBlastParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone.PSIBlastParser-class.html">PSIBlastParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#pdb_id_line">pdb_id_line</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.Restriction.Analysis-class.html#print_that">print_that()</a><br />
<span class="index-where">(in <a href="Bio.Restriction.Restriction.Analysis-class.html">Analysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIWWW.BlastParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIWWW.BlastParser-class.html">BlastParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.CDD.cdd_format-module.html#pdb_id_multiline">pdb_id_multiline</a><br />
<span class="index-where">(in <a href="Bio.CDD.cdd_format-module.html">Bio.CDD.cdd_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat-module.html">PrintFormat</a><br />
<span class="index-where">(in <a href="Bio.Restriction-module.html">Bio.Restriction</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIXML.BlastParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIXML.BlastParser-class.html">BlastParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.pdb-module.html#pdb_rcsb_cgi">pdb_rcsb_cgi</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.pdb-module.html">Bio.dbdefs.pdb</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction.PrintFormat.PrintFormat-class.html">PrintFormat</a><br />
<span class="index-where">(in <a href="Bio.Restriction.PrintFormat-module.html">Bio.Restriction.PrintFormat</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIXML-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIXML-module.html">Bio.Blast.NCBIXML</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html#PDB_REF">PDB_REF</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Mixins.LinkMixin-class.html#prlinks">prlinks()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Mixins.LinkMixin-class.html">LinkMixin</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.CDD.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.CDD.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#pdb_reference">pdb_reference()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Problem-class.html">Problem</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Compass.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Compass.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.fssp_rec.align-class.html#pdb_res_num">pdb_res_num</a><br />
<span class="index-where">(in <a href="Bio.FSSP.fssp_rec.align-class.html">align</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes-module.html#problem_category_mapping">problem_category_mapping</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Decode-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Decode-module.html">Bio.Decode</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBExceptions-module.html#PDBConstructionException">PDBConstructionException</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBExceptions-module.html">Bio.PDB.PDBExceptions</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.NACCESS-module.html#process_asa_data">process_asa_data()</a><br />
<span class="index-where">(in <a href="Bio.PDB.NACCESS-module.html">Bio.PDB.NACCESS</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ECell.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.ECell.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBParser%27-module.html#PDBConstructionException">PDBConstructionException</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBParser%27-module.html">Bio.PDB.PDBParser'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#process_dict">process_dict()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.DSSP%27-module.html#PDBException">PDBException</a><br />
<span class="index-where">(in <a href="Bio.PDB.DSSP%27-module.html">Bio.PDB.DSSP'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#process_list">process_list()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.Primer3Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer.Primer3Parser-class.html">Primer3Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBExceptions-module.html#PDBException">PDBException</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBExceptions-module.html">Bio.PDB.PDBExceptions</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#process_para">process_para()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer.PrimerSearchParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer.PrimerSearchParser-class.html">PrimerSearchParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Superimposer%27-module.html#PDBException">PDBException</a><br />
<span class="index-where">(in <a href="Bio.PDB.Superimposer%27-module.html">Bio.PDB.Superimposer'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.QueryAll-class.html#process_row">process_row()</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.QueryAll-class.html">QueryAll</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Enzyme.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Enzyme.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBExceptions-module.html">PDBExceptions</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.DocSQL.QueryAllFirstItem-class.html#process_row">process_row()</a><br />
<span class="index-where">(in <a href="Bio.DocSQL.QueryAllFirstItem-class.html">QueryAllFirstItem</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Fasta.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Fasta.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27.PDBIO-class.html">PDBIO</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBIO%27-module.html">Bio.PDB.PDBIO'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.NACCESS-module.html#process_rsa_data">process_rsa_data()</a><br />
<span class="index-where">(in <a href="Bio.PDB.NACCESS-module.html">Bio.PDB.NACCESS</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Fasta.SequenceParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Fasta.SequenceParser-class.html">SequenceParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBIO%27-module.html">PDBIO'</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#process_structure_stack">process_structure_stack()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.FeatureParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.FeatureParser-class.html">FeatureParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27.PDBList-class.html">PDBList</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBList%27-module.html">Bio.PDB.PDBList'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen.SimCoal.Template-module.html#process_text">process_text()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.SimCoal.Template-module.html">Bio.PopGen.SimCoal.Template</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.LocationParser-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.LocationParser-module.html">Bio.GenBank.LocationParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBList%27-module.html">PDBList'</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ElementNode-class.html#processing_instruction">processing_instruction()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ElementNode-class.html">ElementNode</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBParser%27.PDBParser-class.html">PDBParser</a><br />
<span class="index-where">(in <a href="Bio.PDB.PDBParser%27-module.html">Bio.PDB.PDBParser'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.ObjectParserHandler-class.html#processingInstruction">processingInstruction()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.POM.ObjectParserHandler-class.html">ObjectParserHandler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PDBParser%27-module.html">PDBParser'</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc-module.html">Prodoc</a><br />
<span class="index-where">(in <a href="Bio.Prosite-module.html">Bio.Prosite</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Geo-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Geo-module.html">Bio.Geo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NMR.xpktools.Peaklist-class.html">Peaklist</a><br />
<span class="index-where">(in <a href="Bio.NMR.xpktools-module.html">Bio.NMR.xpktools</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.prodoc-module.html">prodoc</a><br />
<span class="index-where">(in <a href="Bio.dbdefs-module.html">Bio.dbdefs</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Gobase.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Gobase.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.CharBuffer-class.html#peek">peek()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.CharBuffer-class.html">CharBuffer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.prodoc-module.html#prodoc">prodoc</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.prodoc-module.html">Bio.dbdefs.prodoc</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.IntelliGenetics.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.IntelliGenetics.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.CharBuffer-class.html#peek_nonwhitespace">peek_nonwhitespace()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.CharBuffer-class.html">CharBuffer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.prodoc-module.html#prodoc_expasy_cgi">prodoc_expasy_cgi</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.prodoc-module.html">Bio.dbdefs.prodoc</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.InterPro.InterProParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.InterPro.InterProParser-class.html">InterProParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus.CharBuffer-class.html#peek_word">peek_word()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus.CharBuffer-class.html">CharBuffer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.primer3_format-module.html#product_size">product_size</a><br />
<span class="index-where">(in <a href="Bio.Emboss.primer3_format-module.html">Bio.Emboss.primer3_format</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KEGG.Compound-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.KEGG.Compound-module.html">Bio.KEGG.Compound</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.File.UndoHandle-class.html#peekline">peekline()</a><br />
<span class="index-where">(in <a href="Bio.File.UndoHandle-class.html">UndoHandle</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html#product_size">product_size()</a><br />
<span class="index-where">(in <a href="Bio.Emboss.Primer._Primer3RecordConsumer-class.html" onclick="show_private();">_Primer3RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KEGG.Enzyme-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.KEGG.Enzyme-module.html">Bio.KEGG.Enzyme</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.utils-module.html#percent_monomers">percent_monomers()</a><br />
<span class="index-where">(in <a href="Bio.utils-module.html">Bio.utils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.transfac-module.html#PROFILE_LINE">PROFILE_LINE</a><br />
<span class="index-where">(in <a href="Bio.expressions.transfac-module.html">Bio.expressions.transfac</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.KEGG.Map-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.KEGG.Map-module.html">Bio.KEGG.Map</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#personal_name_as_subject">personal_name_as_subject()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Compass._Consumer-class.html#profilewidth">profilewidth()</a><br />
<span class="index-where">(in <a href="Bio.Compass._Consumer-class.html" onclick="show_private();">_Consumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmIterator-class.html#pfam_gr_mapping">pfam_gr_mapping</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#program_description">program_description</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse.LocusLinkParser-class.html">LocusLinkParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html#pfam_gr_mapping">pfam_gr_mapping</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.hmmpfam-module.html#program_version">program_version</a><br />
<span class="index-where">(in <a href="Bio.expressions.hmmpfam-module.html">Bio.expressions.hmmpfam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MASTParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser.MASTParser-class.html">MASTParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html#pfam_gr_mapping">pfam_gr_mapping</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html#prompt_user_passwd">prompt_user_passwd()</a><br />
<span class="index-where">(in <a href="Bio.Restriction._Update.Update.RebaseUpdate-class.html">RebaseUpdate</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MEME.Parser.MEMEParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.MEME.Parser.MEMEParser-class.html">MEMEParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html#pfam_gr_mapping">pfam_gr_mapping</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Encodings.IUPACEncoding-module.html#property">property</a><br />
<span class="index-where">(in <a href="Bio.Encodings.IUPACEncoding-module.html">Bio.Encodings.IUPACEncoding</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Medline.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Medline.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmIterator-class.html#pfam_gs_mapping">pfam_gs_mapping</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PropertyManager-module.html">PropertyManager</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.MetaTool.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.MetaTool.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html#pfam_gs_mapping">pfam_gs_mapping</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PropertyManager.PropertyManager-class.html">PropertyManager</a><br />
<span class="index-where">(in <a href="Bio.PropertyManager-module.html">Bio.PropertyManager</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.NBRF.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.NBRF.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html#pfam_gs_mapping">pfam_gs_mapping</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmIterator-class.html">StockholmIterator</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#prorule">prorule()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Ndb.NdbParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Ndb.NdbParser-class.html">NdbParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html#pfam_gs_mapping">pfam_gs_mapping</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.StockholmIO.StockholmWriter-class.html">StockholmWriter</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite-module.html">Prosite</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.AbstractParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport.AbstractParser-class.html">AbstractParser</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Pgdb_dbutils-class.html">Pgdb_dbutils</a><br />
<span class="index-where">(in <a href="BioSQL.DBUtils-module.html">BioSQL.DBUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.Prosite-class.html">Prosite</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericParser-class.html">GenericParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd-module.html">Phd</a><br />
<span class="index-where">(in <a href="Bio.Sequencing-module.html">Bio.Sequencing</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.prosite-module.html">prosite</a><br />
<span class="index-where">(in <a href="Bio.dbdefs-module.html">Bio.dbdefs</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.FDist.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.FDist.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhdIO-module.html">PhdIO</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.prosite-module.html#prosite">prosite</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.prosite-module.html">Bio.dbdefs.prosite</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhdIO-module.html#PhdIterator">PhdIterator()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.PhdIO-module.html">Bio.SeqIO.PhdIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#prosite_alphabet">prosite_alphabet</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PopGen.GenePop-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.PopGen.GenePop-module.html">Bio.PopGen.GenePop</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#phenotype">phenotype</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.prosite-module.html#prosite_expasy_cgi">prosite_expasy_cgi</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.prosite-module.html">Bio.dbdefs.prosite</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#phenotype_block">phenotype_block</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#prosite_re">prosite_re</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc-module.html">Bio.Prosite.Prodoc</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.PhraseIgnored-class.html">PhraseIgnored</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Enzyme._RecordConsumer-class.html#prosite_reference">prosite_reference()</a><br />
<span class="index-where">(in <a href="Bio.Enzyme._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.PhraseIgnored-class.html">PhraseIgnored</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Prodoc._RecordConsumer-class.html#prosite_reference">prosite_reference()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Prodoc._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Prosite-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Prosite-module.html">Bio.Prosite</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eSearch_020511.PhraseNotFound-class.html">PhraseNotFound</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eSearch_020511-module.html">Bio.EUtils.DTDs.eSearch_020511</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#prosite_term_re">prosite_term_re</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Rebase.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Rebase.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.PhraseNotFound-class.html">PhraseNotFound</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#prosite_to_grouped_re">prosite_to_grouped_re()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Cla.Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Cla.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd._RecordConsumer-class.html#phred_version">phred_version()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern-module.html#prosite_to_re">prosite_to_re()</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Cla-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Cla-module.html">Bio.SCOP.Cla</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.PhylipIO-module.html">PhylipIO</a><br />
<span class="index-where">(in <a href="Bio.AlignIO-module.html">Bio.AlignIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeAlphabet-class.html">PrositeAlphabet</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Des.Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Des.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhylipIO-module.html">PhylipIO</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeMatch-class.html">PrositeMatch</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Des-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Des-module.html">Bio.SCOP.Des</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.PhylipIO.PhylipIterator-class.html">PhylipIterator</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.PhylipIO-module.html">Bio.AlignIO.PhylipIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite.Pattern.PrositeTerm-class.html">PrositeTerm</a><br />
<span class="index-where">(in <a href="Bio.Prosite.Pattern-module.html">Bio.Prosite.Pattern</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Dom.Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Dom.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhylipIO-module.html#PhylipIterator">PhylipIterator()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.PhylipIO-module.html">Bio.SeqIO.PhylipIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.IUPAC-module.html#protein">protein</a><br />
<span class="index-where">(in <a href="Bio.Alphabet.IUPAC-module.html">Bio.Alphabet.IUPAC</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Dom-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Dom-module.html">Bio.SCOP.Dom</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignIO.PhylipIO.PhylipWriter-class.html">PhylipWriter</a><br />
<span class="index-where">(in <a href="Bio.AlignIO.PhylipIO-module.html">Bio.AlignIO.PhylipIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo-module.html#Protein20Random">Protein20Random</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo-module.html">Bio.Align.AlignInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Hie.Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Hie.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqIO.PhylipIO.PhylipWriter-class.html">PhylipWriter</a><br />
<span class="index-where">(in <a href="Bio.SeqIO.PhylipIO-module.html">Bio.SeqIO.PhylipIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.CodonTable-class.html#protein_alphabet">protein_alphabet</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable.CodonTable-class.html">CodonTable</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Hie-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Hie-module.html">Bio.SCOP.Hie</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.CodonTable.NCBICodonTable-class.html#protein_alphabet">protein_alphabet</a><br />
<span class="index-where">(in <a href="Bio.Data.CodonTable.NCBICodonTable-class.html">NCBICodonTable</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf.Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt._RecordConsumer-class.html#protein_existence">protein_existence()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP.Raf-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SCOP.Raf-module.html">Bio.SCOP.Raf</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html#protein_genbank_eutils">protein_genbank_eutils</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.genbank-module.html">Bio.dbdefs.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Saf.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Saf.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#protein_letters">protein_letters</a><br />
<span class="index-where">(in <a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SeqIO-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SeqIO-module.html">Bio.SeqIO</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Clustalw.MultipleAlignCL-class.html#PROTEIN_MATRIX">PROTEIN_MATRIX</a><br />
<span class="index-where">(in <a href="Bio.Clustalw.MultipleAlignCL-class.html">MultipleAlignCL</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.ACEParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace.ACEParser-class.html">ACEParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Vector%27-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.PDB.Vector%27-module.html">Bio.PDB.Vector'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#protein_scale">protein_scale()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Ace.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Ace.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#protein_weight_ranges">protein_weight_ranges</a><br />
<span class="index-where">(in <a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Sequencing.Phd.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Sequencing.Phd.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Data.IUPACData-module.html#protein_weights">protein_weights</a><br />
<span class="index-where">(in <a href="Bio.Data.IUPACData-module.html">Bio.Data.IUPACData</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.KeyWList.ListParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.KeyWList.ListParser-class.html">ListParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#pi">pi</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Alphabet.ProteinAlphabet-class.html">ProteinAlphabet</a></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.KeyWList-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.KeyWList-module.html">Bio.SwissProt.KeyWList</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html#pi">pi()</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html">IsoelectricPoint</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html">ProteinAnalysis</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.ProtParam-module.html">Bio.SeqUtils.ProtParam</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Ais.Immune-class.html#pick_a_lymphocyte">pick_a_lymphocyte()</a><br />
<span class="index-where">(in <a href="Bio.Ais.Immune-class.html">Immune</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Gobase.ProteinRecord-class.html">ProteinRecord</a><br />
<span class="index-where">(in <a href="Bio.Gobase-module.html">Bio.Gobase</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt.SProt.SequenceParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt.SProt.SequenceParser-class.html">SequenceParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#pid">pid</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProteinX-class.html">ProteinX</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SwissProt-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.SwissProt-module.html">Bio.SwissProt</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#pid">pid()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils-module.html#proteinX">proteinX</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.UniGene.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.UniGene.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#pid">pid()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Rebase._RecordConsumer-class.html#prototype">prototype()</a><br />
<span class="index-where">(in <a href="Bio.Rebase._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise.psw-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#pid_line">pid_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParam-module.html">ProtParam</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Parser.HeaderFooterParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Martel.Parser.HeaderFooterParser-class.html">HeaderFooterParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.IsoelectricPoint-module.html#pKcterminal">pKcterminal</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.IsoelectricPoint-module.html">Bio.SeqUtils.IsoelectricPoint</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.ProtParamData-module.html">ProtParamData</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils-module.html">Bio.SeqUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Parser.Parser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Martel.Parser.Parser-class.html">Parser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.IsoelectricPoint-module.html#pKnterminal">pKnterminal</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.IsoelectricPoint-module.html">Bio.SeqUtils.IsoelectricPoint</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.UniGene._RecordConsumer-class.html#PROTSIM">PROTSIM()</a><br />
<span class="index-where">(in <a href="Bio.UniGene._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.Parser.RecordParser-class.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Martel.Parser.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils-module.html#PLUS_STRAND">PLUS_STRAND</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.Provider-class.html">Provider</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#parse">parse()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.NCBI-module.html#pmfetch">pmfetch()</a><br />
<span class="index-where">(in <a href="Bio.WWW.NCBI-module.html">Bio.WWW.NCBI</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.eLink_020511.Provider-class.html">Provider</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.eLink_020511-module.html">Bio.EUtils.DTDs.eLink_020511</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.LocusLink._RecordConsumer-class.html#parse_block">parse_block()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.NCBI-module.html#pmneighbor">pmneighbor()</a><br />
<span class="index-where">(in <a href="Bio.WWW.NCBI-module.html">Bio.WWW.NCBI</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.Provider-class.html">Provider</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse_cds_features">parse_cds_features()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.WWW.NCBI-module.html#pmqty">pmqty()</a><br />
<span class="index-where">(in <a href="Bio.WWW.NCBI-module.html">Bio.WWW.NCBI</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DTDs.LinkOut.ProviderId-class.html">ProviderId</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DTDs.LinkOut-module.html">Bio.EUtils.DTDs.LinkOut</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.SCOP-module.html#parse_domain">parse_domain()</a><br />
<span class="index-where">(in <a href="Bio.SCOP-module.html">Bio.SCOP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GA.Crossover.Point-module.html">Point</a><br />
<span class="index-where">(in <a href="Bio.GA.Crossover-module.html">Bio.GA.Crossover</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.fasta-module.html#proxy_error_expr">proxy_error_expr</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.fasta-module.html">Bio.dbdefs.fasta</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse_feature">parse_feature()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.locus_format-module.html#point">point</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.locus_format-module.html">Bio.LocusLink.locus_format</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.genbank-module.html#proxy_error_expr">proxy_error_expr</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.genbank-module.html">Bio.dbdefs.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse_features">parse_features()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide-module.html">Polypeptide</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.dbdefs.medline-module.html#proxy_error_expr">proxy_error_expr</a><br />
<span class="index-where">(in <a href="Bio.dbdefs.medline-module.html">Bio.dbdefs.medline</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_fetch_identifiers">parse_fetch_identifiers()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.Polypeptide-class.html">Polypeptide</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees.Tree-class.html#prune">prune()</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees.Tree-class.html">Tree</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_fetch_publication_xml">parse_fetch_publication_xml()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM-module.html">POM</a><br />
<span class="index-where">(in <a href="Bio.EUtils-module.html">Bio.EUtils</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTTraversal-class.html#prune">prune()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTTraversal-class.html">GenericASTTraversal</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_fetch_sequence_xml">parse_fetch_sequence_xml()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.POM.POMDocument-class.html">POMDocument</a></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA-module.html">PSEA</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Clustalw-module.html#parse_file">parse_file()</a><br />
<span class="index-where">(in <a href="Bio.Clustalw-module.html">Bio.Clustalw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Seq.MutableSeq-class.html#pop">pop()</a><br />
<span class="index-where">(in <a href="Bio.Seq.MutableSeq-class.html">MutableSeq</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA.PSEA-class.html">PSEA</a><br />
<span class="index-where">(in <a href="Bio.PDB.PSEA-module.html">Bio.PDB.PSEA</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Fasta.FastaAlign-module.html#parse_file">parse_file()</a><br />
<span class="index-where">(in <a href="Bio.Fasta.FastaAlign-module.html">Bio.Fasta.FastaAlign</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PopGen-module.html">PopGen</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA-module.html#psea">psea()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PSEA-module.html">Bio.PDB.PSEA</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.AbstractParser-class.html#parse_file">parse_file()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport.AbstractParser-class.html">AbstractParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Crystal.Crystal-class.html#popitem">popitem()</a><br />
<span class="index-where">(in <a href="Bio.Crystal.Crystal-class.html">Crystal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.PSEA-module.html#psea2HEC">psea2HEC()</a><br />
<span class="index-where">(in <a href="Bio.PDB.PSEA-module.html">Bio.PDB.PSEA</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.EmblScanner-class.html#parse_footer">parse_footer()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.EmblScanner-class.html">EmblScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.FSSPAlignRec-class.html#pos_align_list2dict">pos_align_list2dict()</a><br />
<span class="index-where">(in <a href="Bio.FSSP.FSSPAlignRec-class.html">FSSPAlignRec</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.Record.PSIBlast-class.html">PSIBlast</a><br />
<span class="index-where">(in <a href="Bio.Blast.Record-module.html">Bio.Blast.Record</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.GenBankScanner-class.html#parse_footer">parse_footer()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.GenBankScanner-class.html">GenBankScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo.SummaryInfo-class.html#pos_specific_score_matrix">pos_specific_score_matrix()</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo.SummaryInfo-class.html">SummaryInfo</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone.PSIBlastParser-class.html">PSIBlastParser</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone-module.html">Bio.Blast.NCBIStandalone</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse_footer">parse_footer()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.FSSP.PosAlign-class.html">PosAlign</a><br />
<span class="index-where">(in <a href="Bio.FSSP-module.html">Bio.FSSP</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Align.AlignInfo.PSSM-class.html">PSSM</a><br />
<span class="index-where">(in <a href="Bio.Align.AlignInfo-module.html">Bio.Align.AlignInfo</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse_header">parse_header()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqFeature.PositionGap-class.html">PositionGap</a><br />
<span class="index-where">(in <a href="Bio.SeqFeature-module.html">Bio.SeqFeature</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Wise.psw-module.html">psw</a><br />
<span class="index-where">(in <a href="Bio.Wise-module.html">Bio.Wise</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_lcheck">parse_lcheck()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Compass._Consumer-class.html#positive_alignment">positive_alignment()</a><br />
<span class="index-where">(in <a href="Bio.Compass._Consumer-class.html" onclick="show_private();">_Consumer</a>)</span></td>
<td width="33%" class="link-index"><a href="BioSQL.DBUtils.Psycopg_dbutils-class.html">Psycopg_dbutils</a><br />
<span class="index-where">(in <a href="BioSQL.DBUtils-module.html">BioSQL.DBUtils</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Wise.psw-module.html#parse_line">parse_line()</a><br />
<span class="index-where">(in <a href="Bio.Wise.psw-module.html">Bio.Wise.psw</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.SeqUtils.IsoelectricPoint-module.html#positive_pKs">positive_pKs</a><br />
<span class="index-where">(in <a href="Bio.SeqUtils.IsoelectricPoint-module.html">Bio.SeqUtils.IsoelectricPoint</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#publication_date">publication_date()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_link_xml">parse_link_xml()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.HistoryClient-class.html#post">post()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient.HistoryClient-class.html">HistoryClient</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Config-module.html#PUBLICATION_TYPE">PUBLICATION_TYPE</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Config-module.html">Bio.EUtils.Config</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_llinks">parse_llinks()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#posted_date">posted_date()</a><br />
<span class="index-where">(in <a href="Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html" onclick="show_private();">_DatabaseReportConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#publication_type">publication_type()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_neighbor_links">parse_neighbor_links()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Parsers.spark.GenericASTTraversal-class.html#postorder">postorder()</a><br />
<span class="index-where">(in <a href="Bio.Parsers.spark.GenericASTTraversal-class.html">GenericASTTraversal</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.PublicationDBIdsFetchMixin-class.html">PublicationDBIdsFetchMixin</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.parse_pdb_header%27-module.html">parse_pdb_header'</a><br />
<span class="index-where">(in <a href="Bio.PDB-module.html">Bio.PDB</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Prosite._RecordConsumer-class.html#postprocessing">postprocessing()</a><br />
<span class="index-where">(in <a href="Bio.Prosite._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.PublicationDBIdsRecord-class.html">PublicationDBIdsRecord</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.PDB.parse_pdb_header%27-module.html#parse_pdb_header">parse_pdb_header()</a><br />
<span class="index-where">(in <a href="Bio.PDB.parse_pdb_header%27-module.html">Bio.PDB.parse_pdb_header'</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Datatypes.PostResult-class.html">PostResult</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Datatypes-module.html">Bio.EUtils.Datatypes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.DBIdsClient.PublicationDBIdsRecordSet-class.html">PublicationDBIdsRecordSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.DBIdsClient-module.html">Bio.EUtils.DBIdsClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_post">parse_post()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Affy.CelFile-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.Affy.CelFile-module.html">Bio.Affy.CelFile</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.Mixins.PublicationFetchMixin-class.html">PublicationFetchMixin</a><br />
<span class="index-where">(in <a href="Bio.EUtils.Mixins-module.html">Bio.EUtils.Mixins</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ECell._RecordConsumer-class.html#parse_reactor_lines">parse_reactor_lines()</a><br />
<span class="index-where">(in <a href="Bio.ECell._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LogisticRegression-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.LogisticRegression-module.html">Bio.LogisticRegression</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.PublicationHistoryFetchMixin-class.html">PublicationHistoryFetchMixin</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.GenBank.Scanner.InsdcScanner-class.html#parse_records">parse_records()</a><br />
<span class="index-where">(in <a href="Bio.GenBank.Scanner.InsdcScanner-class.html">InsdcScanner</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MarkovModel-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.MarkovModel-module.html">Bio.MarkovModel</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.PublicationHistoryRecord-class.html">PublicationHistoryRecord</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_search">parse_search()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.MaxEntropy-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.MaxEntropy-module.html">Bio.MaxEntropy</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.EUtils.HistoryClient.PublicationHistoryRecordSet-class.html">PublicationHistoryRecordSet</a><br />
<span class="index-where">(in <a href="Bio.EUtils.HistoryClient-module.html">Bio.EUtils.HistoryClient</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Mindy.XPath-module.html#parse_simple_xpath">parse_simple_xpath()</a><br />
<span class="index-where">(in <a href="Bio.Mindy.XPath-module.html">Bio.Mindy.XPath</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NaiveBayes-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.NaiveBayes-module.html">Bio.NaiveBayes</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PubMed-module.html">PubMed</a><br />
<span class="index-where">(in <a href="Bio-module.html">Bio</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EZRetrieve-module.html#parse_single">parse_single()</a><br />
<span class="index-where">(in <a href="Bio.EZRetrieve-module.html">Bio.EZRetrieve</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Statistics.lowess-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.Statistics.lowess-module.html">Bio.Statistics.lowess</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._FeatureConsumer-class.html#pubmed_id">pubmed_id()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._FeatureConsumer-class.html">_FeatureConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ParserSupport.AbstractParser-class.html#parse_str">parse_str()</a><br />
<span class="index-where">(in <a href="Bio.ParserSupport.AbstractParser-class.html">AbstractParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.distance-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.distance-module.html">Bio.distance</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.GenBank._RecordConsumer-class.html#pubmed_id">pubmed_id()</a><br />
<span class="index-where">(in <a href="Bio.GenBank._RecordConsumer-class.html">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Fasta.RecordParser-class.html#parse_string">parse_string()</a><br />
<span class="index-where">(in <a href="Bio.Fasta.RecordParser-class.html">RecordParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.kNN-module.html#power">power</a><br />
<span class="index-where">(in <a href="Bio.kNN-module.html">Bio.kNN</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Medline._RecordConsumer-class.html#pubmed_id">pubmed_id()</a><br />
<span class="index-where">(in <a href="Bio.Medline._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.Fasta.SequenceParser-class.html#parse_string">parse_string()</a><br />
<span class="index-where">(in <a href="Bio.Fasta.SequenceParser-class.html">SequenceParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.PDB.Polypeptide.PPBuilder-class.html">PPBuilder</a><br />
<span class="index-where">(in <a href="Bio.PDB.Polypeptide-module.html">Bio.PDB.Polypeptide</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.expressions.genbank-module.html#pubmed_line">pubmed_line</a><br />
<span class="index-where">(in <a href="Bio.expressions.genbank-module.html">Bio.expressions.genbank</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.ECell._RecordConsumer-class.html#parse_substance_lines">parse_substance_lines()</a><br />
<span class="index-where">(in <a href="Bio.ECell._RecordConsumer-class.html" onclick="show_private();">_RecordConsumer</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees-module.html#PRECISION_BRANCHLENGTH">PRECISION_BRANCHLENGTH</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees-module.html">Bio.Nexus.Trees</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Nexus-module.html#PUNCTUATION">PUNCTUATION</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Nexus-module.html">Bio.Nexus.Nexus</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse-module.html#parse_summary_xml">parse_summary_xml()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse-module.html">Bio.EUtils.parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.Nexus.Trees-module.html#PRECISION_SUPPORT">PRECISION_SUPPORT</a><br />
<span class="index-where">(in <a href="Bio.Nexus.Trees-module.html">Bio.Nexus.Trees</a>)</span></td>
<td width="33%" class="link-index"><a href="Martel-module.html#Punctuation">Punctuation()</a><br />
<span class="index-where">(in <a href="Martel-module.html">Martel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Martel.msre_parse-module.html#parse_template">parse_template()</a><br />
<span class="index-where">(in <a href="Martel.msre_parse-module.html">Martel.msre_parse</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#predict">predict()</a><br />
<span class="index-where">(in <a href="Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html">BasicNetwork</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.LocusLink.web_parse-module.html#put">put()</a><br />
<span class="index-where">(in <a href="Bio.LocusLink.web_parse-module.html">Bio.LocusLink.web_parse</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="Bio.EUtils.parse.UsePOMParser-class.html#parse_using_dtd">parse_using_dtd()</a><br />
<span class="index-where">(in <a href="Bio.EUtils.parse.UsePOMParser-class.html">UsePOMParser</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.NMR.NOEtools-module.html#predictNOE">predictNOE()</a><br />
<span class="index-where">(in <a href="Bio.NMR.NOEtools-module.html">Bio.NMR.NOEtools</a>)</span></td>
<td width="33%" class="link-index"><a href="Bio.AlignAce.Motif.Motif-class.html#pwm">pwm()</a><br />
<span class="index-where">(in <a href="Bio.AlignAce.Motif.Motif-class.html">Motif</a>)</span></td>
</tr>
</table>
</td></tr>
</table>
<br /><br /><!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
bgcolor="#a0c0ff" cellspacing="0">
<tr valign="middle">
<!-- Tree link -->
<th> <a
href="module-tree.html">Trees</a> </th>
<!-- Index link -->
<th bgcolor="#70b0f0" class="navbar-select"
> Indices </th>
<!-- Help link -->
<th> <a
href="help.html">Help</a> </th>
<th class="navbar" width="100%"></th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
<tr>
<td align="left" class="footer">
Generated by Epydoc 3.0.1 on Mon Sep 15 09:26:18 2008
</td>
<td align="right" class="footer">
<a target="mainFrame" href="http://epydoc.sourceforge.net"
>http://epydoc.sourceforge.net</a>
</td>
</tr>
</table>
<script type="text/javascript">
<!--
// Private objects are initially displayed (because if
// javascript is turned off then we want them to be
// visible); but by default, we want to hide them. So hide
// them unless we have a cookie that says to show them.
checkCookie();
// -->
</script>
</body>
</html>
